mRNA_H-paniculata_contig24721.6706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24721.6706.1
Unique NamemRNA_H-paniculata_contig24721.6706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A0X8HSQ0_9SACH (HEL134Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HSQ0_9SACH)

HSP 1 Score: 55.8 bits (133), Expect = 5.930e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVLG 120
            F D L+R E V L++RLS+C  PF CAHGRPSV+P+  LG
Sbjct:  651 FGDFLTREECVQLVERLSLCNMPFQCAHGRPSVIPILELG 690          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A8C4XBL9_ERPCA (MutL homolog 3 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XBL9_ERPCA)

HSP 1 Score: 52.0 bits (123), Expect = 1.350e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPL 108
            F D+L+R E   LI+ LSVC+ PF CAHGRPS++PL
Sbjct: 1275 FNDILTREECCQLIRSLSVCQLPFQCAHGRPSIIPL 1310          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: K1QPR5_CRAGI (DNA mismatch repair protein Mlh3 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QPR5_CRAGI)

HSP 1 Score: 51.6 bits (122), Expect = 1.850e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPL 108
            F D L+R E  DL+Q LS+C+ PF CAHGRPSV+PL
Sbjct: 1655 FGDALTREECGDLLQSLSLCDLPFQCAHGRPSVMPL 1690          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: K0K6B6_WICCF (DNA mismatch repair protein n=1 Tax=Wickerhamomyces ciferrii (strain ATCC 14091 / BCRC 22168 / CBS 111 / JCM 3599 / NBRC 0793 / NRRL Y-1031 F-60-10) TaxID=1206466 RepID=K0K6B6_WICCF)

HSP 1 Score: 50.8 bits (120), Expect = 3.470e-6
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   13 LSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVL 117
            LS+PE   LI+ L  C++PF CAHGRPS+VPLC L
Sbjct:  693 LSKPECEQLIKELVKCKQPFQCAHGRPSIVPLCDL 727          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A4T0WXZ6_9ASCO (MutL_C domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0WXZ6_9ASCO)

HSP 1 Score: 49.7 bits (117), Expect = 8.900e-6
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVL 117
            F D LSR E   LI +L  C+ PF CAHGRPS+ PLCVL
Sbjct:  695 FGDHLSRDEQRRLIDQLGSCQDPFRCAHGRPSLYPLCVL 733          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A5C3F6W7_9BASI (MutL_C domain-containing protein n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3F6W7_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 8.900e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVL 117
            F D L R +   L+ RL+ C  PF CAHGRPSVVPLC++
Sbjct:  691 FNDPLDRQQCEALVARLAECSFPFICAHGRPSVVPLCLI 729          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A0L8R9Q4_SACEU (MLH3-like protein n=2 Tax=Saccharomyces TaxID=4930 RepID=A0A0L8R9Q4_SACEU)

HSP 1 Score: 49.7 bits (117), Expect = 8.900e-6
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVL 117
            F D LSR E + L+ +LS C+ PF CAHGRPS+VP+  L
Sbjct:  676 FGDELSRQECIILVNKLSQCQNPFQCAHGRPSMVPIAEL 714          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: UPI00156087A6 (DNA mismatch repair protein Mlh3 n=2 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI00156087A6)

HSP 1 Score: 47.4 bits (111), Expect = 1.420e-5
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPL 108
            F D LS  E   LI+ LSVC+ PF CAHGRPS++PL
Sbjct:   45 FNDSLSMEECCRLIESLSVCQLPFQCAHGRPSMLPL 80          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A444V574_ACIRT (Acylphosphatase n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444V574_ACIRT)

HSP 1 Score: 48.5 bits (114), Expect = 2.280e-5
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPL 108
            F D LS  E   LIQ LSVC+ PF CAHGRPS++PL
Sbjct:  982 FNDSLSMEECCRLIQSLSVCQLPFQCAHGRPSMLPL 1017          
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Match: A0A383W9Q8_TETOB (MutL_C domain-containing protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W9Q8_TETOB)

HSP 1 Score: 48.5 bits (114), Expect = 2.280e-5
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    1 FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPL 108
            F  LLSR + VDL+Q+L   E  FCCAHGRP+ VPL
Sbjct: 1037 FGKLLSRQQCVDLVQQLGQTELCFCCAHGRPTTVPL 1072          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24721.6706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A0X8HSQ0_9SACH5.930e-860.00HEL134Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
A0A8C4XBL9_ERPCA1.350e-661.11MutL homolog 3 n=3 Tax=Polypteridae TaxID=8289 Rep... [more]
K1QPR5_CRAGI1.850e-663.89DNA mismatch repair protein Mlh3 n=2 Tax=Crassostr... [more]
K0K6B6_WICCF3.470e-662.86DNA mismatch repair protein n=1 Tax=Wickerhamomyce... [more]
A0A4T0WXZ6_9ASCO8.900e-661.54MutL_C domain-containing protein n=1 Tax=[Candida]... [more]
A0A5C3F6W7_9BASI8.900e-656.41MutL_C domain-containing protein n=1 Tax=Pseudozym... [more]
A0A0L8R9Q4_SACEU8.900e-656.41MLH3-like protein n=2 Tax=Saccharomyces TaxID=4930... [more]
UPI00156087A61.420e-561.11DNA mismatch repair protein Mlh3 n=2 Tax=Acipenser... [more]
A0A444V574_ACIRT2.280e-563.89Acylphosphatase n=1 Tax=Acipenser ruthenus TaxID=7... [more]
A0A383W9Q8_TETOB2.280e-561.11MutL_C domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24721contigH-paniculata_contig24721:3243..3362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.6332817-CDS-H-paniculata_contig24721:3242..33621622929720.6332817-CDS-H-paniculata_contig24721:3242..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24721 3243..3362 -
1691480982.0668905-CDS-H-paniculata_contig24721:3242..33621691480982.0668905-CDS-H-paniculata_contig24721:3242..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24721 3243..3362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24721.6706.1prot_H-paniculata_contig24721.6706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24721 3243..3362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24721.6706.1

>prot_H-paniculata_contig24721.6706.1 ID=prot_H-paniculata_contig24721.6706.1|Name=mRNA_H-paniculata_contig24721.6706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
FVDLLSRPEFVDLIQRLSVCERPFCCAHGRPSVVPLCVLG
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mRNA from alignment at H-paniculata_contig24721:3243..3362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24721.6706.1 ID=mRNA_H-paniculata_contig24721.6706.1|Name=mRNA_H-paniculata_contig24721.6706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig24721:3243..3362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTAGATTTGCTGTCTCGGCCGGAGTTCGTTGACCTCATCCAAAGGCT CTCGGTTTGCGAGCGGCCATTTTGCTGTGCCCACGGCCGTCCGAGTGTGG TGCCCCTGTGCGTCTTGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24721:3243..3362-

>mRNA_H-paniculata_contig24721.6706.1 ID=mRNA_H-paniculata_contig24721.6706.1|Name=mRNA_H-paniculata_contig24721.6706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig24721:3243..3362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTAGATTTGCTGTCTCGGCCGGAGTTCGTTGACCTCATCCAAAGGCT
CTCGGTTTGCGAGCGGCCATTTTGCTGTGCCCACGGCCGTCCGAGTGTGG
TGCCCCTGTGCGTCTTGGGATTCGTAGATTTGCTGTCTCGGCCGGAGTTC
GTTGACCTCATCCAAAGGCTCTCGGTTTGCGAGCGGCCATTTTGCTGTGC
CCACGGCCGTCCGAGTGTGGTGCCCCTGTGCGTCTTGGGA
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