mRNA_H-paniculata_contig24686.6692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A6H5JC51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC51_9PHAE) HSP 1 Score: 380 bits (975), Expect = 2.490e-128 Identity = 224/317 (70.66%), Postives = 255/317 (80.44%), Query Frame = 1
Query: 1 QNIWKARCVTEWKVKALPASCEWRSLHNDLVRSLNAVNGTAEFHTS--DYNNVFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGDGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDMTTESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
+NIWKARCV +WKV WR+LH DLV L+ V+GTAE DY NV AI++VLD YRTLAEM RACF RLG LL ++AREA K D RIM+HALW LK YP+DVD+ LKI+RFLVLAGRP G EG V+ R PA +G L+AFGPSG+GV AVLACMERH+S+A +QA+ACWS+VNLALI QKR L R+GG+ XXXXXXXXXXXXXXXXXXXXXXXX LVTPD+T+E I DTMKAVV IVVSAIQAFSN+ IVNR CLVLHNIALDPGHL AL+A+GAPEEL+ AIGKHP+D LL QCATGTLRRL
Sbjct: 62 ENIWKARCVEQWKVPPNTTCHAWRTLHIDLVHCLSLVDGTAEETCGGGDYGNVVAIVQVLDAYRTLAEMTRACFDRLGHLLNSEEAREAVKCVDWRIMDHALWALKTYPDDVDLLLKILRFLVLAGRPAGRMEGAVMSRPPASDGPLRAFGPSGNGVEAVLACMERHRSNAAVQAVACWSLVNLALIPGQKRSLCRQGGVLXXXXXXXXXXXXXXXXXXXXXXXXXLVTPDVTSEKIIQPDTMKAVVAIVVSAIQAFSNMVTIVNRACLVLHNIALDPGHLGALVAIGAPEELLHAIGKHPTDALLIQCATGTLRRL 378
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: F0Y6I8_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6I8_AURAN) HSP 1 Score: 114 bits (284), Expect = 7.410e-25 Identity = 115/297 (38.72%), Postives = 162/297 (54.55%), Query Frame = 1
Query: 64 EWRSLHNDLVRSLNAVNGTAEFHTSDYNNVFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGDGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDMTTESSIPTDTM---KAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
E R LH ++ + + G + V + ++ + +A + R C L + L ++AR+A + R+ + L A+ ++Q+ + +V RP+GG EGMV R A +G L AF G+AAVLA M H S +QAM CWS+VNLAL QK L++ G+ XXXXXXXXXXXXXXXXXXXXXXX LV P+ D K VV V+ A+ AF + +V GCLVLHN++LD G++ L+A G L +A +H D +++ A TLRRL
Sbjct: 156 ELRRLHRSVLDASSRARGAS---------VDDVSRIMRAHEDVAGVQRRCLETLAERLHCERARKAA--LEARVTAQVVAALWAFLPAAELQVVALHCVVFLARPIGGAEGMVFHRGMASQG-LDAFLGKRGGIAAVLASMRAHGSVDSVQAMGCWSLVNLALNHQQKLELLKLRGLDRXXXXXXXXXXXXXXXXXXXXXXXXLVIPEAGALYEDDLDLKAANKRVVRYVLGAMAAFPDSEKLVRCGCLVLHNLSLDDGNVPHLLAAGVSLPLQRA-ARHHKDADVQRSAVSTLRRL 439
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A7S3LG40_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LG40_9STRA) HSP 1 Score: 109 bits (273), Expect = 6.900e-23 Identity = 82/286 (28.67%), Postives = 137/286 (47.90%), Query Frame = 1
Query: 151 VFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSG-----DGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDMTTESSIPT---------------DTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPG-HLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
+++I+ + + ++ + C L LL +Q R + A + + L + +P+ V + +VL RP+GG EGM+ + + G +G G+A +L M R +S A +QAM+CWS+VN+AL QK VLV+ GGI NLV P + +++ T + ++ +V +VV A++ + + AI+NR CLVLHN++L PG H L+ + L + + +D++L+Q ATGTL RL
Sbjct: 854 IYSIVNWMVGFSSVEGIQTMCLKVLPFLLEDEQQRMTAQRAG--LTDVVLRGMVMFPKSVPLHTAAFHTIVLLARPLGGREGMLFHSSMVNASGIFSGGNAGGTNGKSGIAVMLDSMRRFESEAVLQAMSCWSLVNIALAPAQKEVLVKLGGIQATAGAMLAHPENAEVQFRALFALINLVIPSVAMTNNVDTQDTAIEDEQGNDMLDELVEQIVGLVVRAMKNYCSSKAILNRACLVLHNLSLTPGYHQHLLLIPHCYQMLEWCLANYRTDQVLQQSATGTLHRL 1137
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A7S3ZUP6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUP6_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.310e-22 Identity = 97/317 (30.60%), Postives = 142/317 (44.79%), Query Frame = 1
Query: 49 LPASCEWRSLHNDL----VRSLNAVNGTAEFHTSDYNNVFAIIEVLDVYRTLAEMARA------CFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGDGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDMTTESSIPTDTMKA--------VVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
L +S WR +DL V +L ++ T T + + D+ R +++ AR CF L L + R+ D + + L + E D+Q+ + +V RP+GG EGMV R A G G SG G+AAVL M H ++ +QAM CWS+VNLAL QK L+ G+ NLV P+ S+ T+TM VV V++A++ F +V GCLVLHN++LD ++ L+A G L +A H D +++ A TLRRL
Sbjct: 146 LCSSTPWRIHRSDLEHRPVNALRRLHRTVVEATDSVDTA----PIADIARIMSDHARVAGVQVRCFRTLADRLHCETFRKNA--LDCGVASSVVRALWKFDECDDVQVVALHCVVFLARPIGGAEGMVYHRGMASRGLDAFLGESG-GIAAVLRSMRVHLKNSNVQAMGCWSLVNLALNHQQKLALLALDGLDAVLAAMAHHPSTLEVQFRALFALINLVIPEA---GSVSTNTMDCGENAAHARVVRGVLAAMRHFPESEKLVRCGCLVLHNLSLDDKNVPHLLAFGVARPLQRAARSH-KDADVQRSAVSTLRRL 451
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A7S2MKG5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MKG5_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.280e-21 Identity = 82/269 (30.48%), Postives = 121/269 (44.98%), Query Frame = 1
Query: 211 CFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVL-PRLPACEGALKAFGPSG-DGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPD---------------------MTTESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPG-HLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
C L LL + R + A + + L + +P+ V++ LVL RP+GG EGM+ + G +G +G+A +L M R +QAM+CWSMVN+ALI QK +LV+ GGI NLV P TTE + + + + +VV A++ F + AI+NR CLVLHN++L+ H + L + L IG + DR+L+Q A GTL+RL
Sbjct: 7 CLKVLPFLLEDENQRTTAQRAG--LTDIVLRGMVLFPDSVELHTAAFHTLVLLARPLGGKEGMLFHSAMVNASGIFNVGSNTGKNGIAVMLDSMRRFSHDEVLQAMSCWSMVNIALIPSQKTMLVKLGGISVAANAMMQHPYNAEVQFRALFALINLVIPSENLSEGSAEAMAVQEQLGEVSQTTEQEMLDENVGQIANLVVVAMKNFCSSEAILNRACLVLHNLSLNEDYHTTLLWTPNCYQMLEWCIGNYRHDRVLQQSAGGTLQRL 273
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: B7FR68_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FR68_PHATC) HSP 1 Score: 103 bits (256), Expect = 1.120e-20 Identity = 80/281 (28.47%), Postives = 130/281 (46.26%), Query Frame = 1
Query: 151 VFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVL-PRLPACEGALKAFGPSG----DGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTP----------DMTTESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPG-HLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
+F+I+ + + + + C L LL +Q R + A + + L + +P+ + +VL RP+GG EGM+ + G A + G+A +L M+R Q +QAM+CWS+VN+AL QK VLV GGI NLV P ++ TE + +++ ++ +V+ A++ F AIVNR CLVLHN++L H + L + L + +P+D++L+Q A+GTL RL
Sbjct: 726 IFSIVNWMLAFSDVEGIQTMCLRDLPSLLEDEQQRITAQRAG--LTDVVLRAMVTFPDSSPLHTAAFHTIVLLARPLGGREGMLFHTSMVNSSGIFSASSVASRNGKSGIAVMLDSMKRFQQDEVLQAMSCWSLVNIALAPAQKEVLVNLGGIEVTSRAMCAHPHSAEVQFRALFALINLVIPSRDQGEPLRGEVITEKEMLDESVDQIIHLVLLAMKNFCASEAIVNRACLVLHNVSLTREYHETLLCCPNCYQMLEWCLANYPTDQVLQQSASGTLHRL 1004
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A6T9YI25_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A6T9YI25_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.180e-20 Identity = 80/289 (27.68%), Postives = 127/289 (43.94%), Query Frame = 1
Query: 151 VFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSG--DGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDMT---------------------TESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPG-HLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
+++I+ + + + + C L LL + R + A + + L + +P+ V + +VL RP+GG EGM+ + G G +G+A +L M R S +QAM+CWS+VN+AL QK VLV+ GGI NLV P + TE + + + + +VV A++ F + I+NR CLVLHN++L H + L + L + +PSD++L+QCA GTL RL
Sbjct: 355 IYSIVNWMVAFSDVEGIQTMCLRVLPFLLEDETQRTTAQRAGLTGI--VLRGMVLFPDSVQLHTAAFHTIVLLARPLGGREGMLFHSSMVNSSGIFINGHQGGKNGIAVMLDSMRRFASEEPLQAMSCWSLVNVALAPSQKAVLVKLGGISATANAMMQHPYSAEVQFRALFALINLVIPSVNLSEETSEQRSMQEQLGEVNDATEREMLDENVGQIANLVVLAMKNFCSSQTILNRACLVLHNLSLTQEYHETLLWTPNCYQMLEWCLANYPSDQVLQQCAAGTLHRL 641
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A7S3JW95_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW95_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.440e-20 Identity = 86/337 (25.52%), Postives = 152/337 (45.10%), Query Frame = 1
Query: 4 NIWKARCVTE-WKV-------KALPASCEWRSLHNDLVRSLNAVNGTAEFHTSDYNNVFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGDGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDM--------------TTESSIPTDTMKA-VVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALMAMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
NIW C + W++ + + E+R LH +L+ +++ +V + ++ ++ + + C RL L ++ R+ + D ++ ++ L+ Y + ++Q + +V RP+GG EGMV R G L+AF G+ VL M+ H S + +QA+ CWS+VNLAL QK ++ + GI NLV P+ T + +P DT+ ++ V+ A+ F + ++ GCLVLHN++L P ++ L A + L++A H +D +++ A TLRRL
Sbjct: 150 NIWFPLCTAKPWQMSWSDLEERGYSTASEFRELHTNLIHAIDIARR---------GDVAQVANIMKEFQDVIGLQYECLERLIIALHCERVRK--RAIDAKLASCVIYILQRYSHNTELQSMALHCIVFLARPIGGAEGMVFCRGVHSNG-LEAF--LYGGIDIVLDAMKNHISSSVVQAVGCWSLVNLALNRQQKIDILTKNGIQCIIRAMQIHPHCLDVQFRALFALINLVIPENVQQQFNQNDPHNTNTNNTFLPQDTISHDILDHVLIAMDRFGDSDKLIRCGCLVLHNLSLRPTNIPILQANNTSKPLLRAARTH-NDHDVQRSAISTLRRL 471
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A1E7FRR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRR6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.640e-19 Identity = 80/313 (25.56%), Postives = 131/313 (41.85%), Query Frame = 1
Query: 151 VFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGDGVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDM-----------------------------------------------TTESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALMAMGAPEELVQ-AIGKHPSDRLLRQCATGTLRRL 945
+++I+ + + + + C L LL +Q R A + + L + + E + + LVL RP GG EGM+ G G+A +L M R + +A + AM+CW++VN+AL++DQK VLV+ GGI NLV P + TTE I D ++ V ++VV ++ F + AI+NR CLVLHN++L + S L+ ++++ + + +D++L+Q ATGTL RL
Sbjct: 26 IYSIVNWMVAFSDVEGIQTLCMKVLPVLLENEQHRLTANSAG--LADVVLRAMVMFSESAQLHIASFHTLVLLSRPHGGKEGMLFHNSMTAGGIFGGGCHGKSGIAVMLDSMRRFEDNAALLAMSCWALVNIALVSDQKAVLVKLGGIQAITNAMYRHPFSAELQFRALFALINLVIPSVEDNNDNANVDVDGDGAPGVAVVPPRQIAEGAAAAAASIQEQLGELNETTEKEIIDDLVEDVASLVVRVMKNFCSSEAIINRACLVLHNLSLTEDYHSILLWTPQCYQMLEWCVANYRTDQVLQQSATGTLHRL 336
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Match: A0A1Z5JKA1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKA1_FISSO) HSP 1 Score: 99.0 bits (245), Expect = 3.020e-19 Identity = 76/282 (26.95%), Postives = 130/282 (46.10%), Query Frame = 1
Query: 151 VFAIIEVLDVYRTLAEMARACFGRLGQLLAGDQAREATKYADVRIMEHALWTLKAYPEDVDMQLKIMRFLVLAGRPVGGTEGMVLPRLPACEGALKAFGPSGD-----GVAAVLACMERHQSHAGIQAMACWSMVNLALITDQKRVLVREGGIXXXXXXXXXXXXXXXXXXXXXXXXXNLVTPDM-----------TTESSIPTDTMKAVVTIVVSAIQAFSNIAAIVNRGCLVLHNIALDPGHLSALM-AMGAPEELVQAIGKHPSDRLLRQCATGTLRRL 945
+++I+ + + + + C L ++ + R A + A + + L + +P+ + +VL RP+GG EGM+ ++ G D G+A +L ++R + +QAM+CWS+VN+AL QK++LV+ GGI NLV P + +E + + VV +VV+A++ F + AI+NR CLVLHNI+L + AL+ + L + + SD++L+Q A GTL RL
Sbjct: 684 LYSIVNWMTAFSDVEGIQTMCLKVLPPIMENEHQRSAAQRAG--LTNNVLRAMVRFPDSAPLHTAAFHAIVLLARPLGGREGMLFHSSMVNASSIFDSGTPTDQGGKSGIAVMLDSIKRFEYDGVLQAMSCWSLVNIALAPAQKQMLVKLGGIQATANAMMIHPYDAEVQFRALFALINLVIPSVRSADQEEVGSDVSEKEMLDAVVGRVVGLVVAAMKNFCSSEAILNRACLVLHNISLSQSYHGALLWTPNCYQMLEWCLSNYKSDQVLQQSAAGTLHRL 963 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24686.6692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24686.6692.1 >prot_H-paniculata_contig24686.6692.1 ID=prot_H-paniculata_contig24686.6692.1|Name=mRNA_H-paniculata_contig24686.6692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp QNIWKARCVTEWKVKALPASCEWRSLHNDLVRSLNAVNGTAEFHTSDYNNback to top mRNA from alignment at H-paniculata_contig24686:1962..3309- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24686.6692.1 ID=mRNA_H-paniculata_contig24686.6692.1|Name=mRNA_H-paniculata_contig24686.6692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1348bp|location=Sequence derived from alignment at H-paniculata_contig24686:1962..3309- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24686:1962..3309- >mRNA_H-paniculata_contig24686.6692.1 ID=mRNA_H-paniculata_contig24686.6692.1|Name=mRNA_H-paniculata_contig24686.6692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig24686:1962..3309- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |