mRNA_H-paniculata_contig24642.6683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: D7FZ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ86_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.800e-39 Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 1 GLYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEEDDQV 336
GLYK KAAKD ++ AL+D L GRP+G VP+EE + FCKNARK++ +T+RS+EEEYG + ++EI+ + DPYE EQTPI+WYLALRA D F+++N RYPGEEDDQV
Sbjct: 98 GLYKAKAAKDTAAVAALLDEGLARAGRPRGSVPREETEAFCKNARKLLTMTTRSIEEEYGNNTCNKDEISCELGDPYEVPEQTPIVWYLALRAADSFKTKNGRYPGEEDDQV 209
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A6H5KYD4_9PHAE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD4_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.330e-38 Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 1 GLYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEEDDQV 336
GLYK KAAKD ++ AL+D L GRP+G VP+EE ++FCKNARK++ +T+RS+EEEYG + ++EI+ + DPYE EQTPI+WYLALRA D F+++N RYPGEEDDQV
Sbjct: 332 GLYKAKAAKDTAAVAALLDEGLARAGRPRGSVPREETEVFCKNARKLLTMTTRSIEEEYGNNTCNKDEISCELGDPYEVPEQTPIVWYLALRAADAFKTKNGRYPGEEDDQV 443
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A7R9ZSY4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSY4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.070e-11 Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITE---VMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEEDD 330
LYKD+A D + + AL+ A V +++ C N I + +R+L EE+ + E + + +DPYEA E TP LWYL RA ++F ++N RYPG DD
Sbjct: 31 LYKDQAMADVKEMKALLGAETA--------VSDDDLQTLCANVFSIGQLKTRTLVEEFTSTTVDDELVEDWGMATFDPYEAPEHTPFLWYLGFRACNVFFAKNQRYPGTTDD 134
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: UPI001470D794 (LOW QUALITY PROTEIN: NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470D794) HSP 1 Score: 67.4 bits (163), Expect = 8.930e-11 Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPG 318
+Y++KA +D ++ V LL+ G+P + + ++ +FCKNA + V RSL EEY ++EIT M DP + E ++ YL LRAVD F ++ R+PG
Sbjct: 344 VYREKAMQDAAAVSKHVQHLLLSVGKPSESISENDIKLFCKNAFFLRVVYCRSLAEEYSADLINKDEITSCM-DPVQNSE---MVLYLMLRAVDRFYQQHCRHPG 444
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A4Y2BTI0_ARAVE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BTI0_ARAVE) HSP 1 Score: 67.4 bits (163), Expect = 8.990e-11 Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYG-EASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEEDDQV 336
+YK KA +D + A V L +P + + EV +FCKNA + + RS+++EY E S + I ++ + E + I++Y+ LRAVD F SE RYPG+ +D+V
Sbjct: 370 IYKAKADEDAHIVYARVQQLLSNLAKPPNFISEHEVKVFCKNAHCLRVLHGRSIKDEYNPEKSNVQSLIADLEH------EDSDIIFYVLLRAVDKFHSEYCRYPGQTNDEV 475
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A3M7QG66_BRAPC (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QG66_BRAPC) HSP 1 Score: 67.0 bits (162), Expect = 1.280e-10 Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPG 318
+YK KA D +S+L+ V+ LL +P + ++EV ++CKNA + + RS+ +EY ++ + E D + +++Y+ +RAVDLF EN+R+PG
Sbjct: 773 VYKSKAQHDVDSVLSRVERILLNINKPFDYISEQEVKLYCKNAHNLKNIRYRSVSQEYDPQTSNLGSLIEENSD-------SDLIFYILMRAVDLFHLENNRFPG 870
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A0L0HFY1_SPIPD (NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HFY1_SPIPD) HSP 1 Score: 65.5 bits (158), Expect = 4.220e-10 Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPG 318
+Y+ KA +D ++ V + L++ GR + V +EE++ FCKNA + + RSL+EEY + + ++I + DP I++Y+ +RA DLF RYPG
Sbjct: 336 IYRTKAREDCAAVKERVKSILVSSGRSQDAVSEEEIERFCKNAAYLKVIRYRSLKEEYEQCTLTGKKIGNWLSDP-----DDNIVFYVLVRAADLFYERMQRYPG 435
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: H3GA55_PHYRM (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA55_PHYRM) HSP 1 Score: 65.5 bits (158), Expect = 4.220e-10 Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEED 327
LY KA +D + ++ L +G V E V FCKNA + + +RS+ +EY + ++ E E EQ+P++WY+ LRAV F SE +RYPG ED
Sbjct: 339 LYVSKAKEDATKVHEILRKRLRELKLSEGSVSFEAVAAFCKNAPSVGMLDTRSVAQEYKHVDLSGVDLEE------EDHEQSPLIWYVMLRAVAAFASEFNRYPGSED 440
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: A0A484DUH3_BRELC (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUH3_BRELC) HSP 1 Score: 62.8 bits (151), Expect = 3.720e-9 Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEASAAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEED 327
LY +K +D + ++ + L P+ + ++V FCKNA I + +R++ EEY + ++ + E +EQ+P++WY+ LRAV F SE +RYPG ED
Sbjct: 339 LYVNKGNEDARKVHEILRSHLRDLKLPEDCISFDDVVAFCKNAPNIGMLETRTIAEEYQRIDLSSVDLED------ENKEQSPLIWYVMLRAVAAFVSEFARYPGSED 440
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Match: X6LWQ2_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LWQ2_RETFI) HSP 1 Score: 62.4 bits (150), Expect = 4.810e-9 Identity = 40/127 (31.50%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 4 LYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVTSRSLEEEYGEAS----------------AAREEITEVMYDPYEAEEQTPILWYLALRAVDLFQSENSRYPGEEDDQV 336
+YK++A KDR+++L V L G+PK D+ E VD F +N R + V +RS+ +EY E+ E + P++ + I WY A R++D F ++ R PG DQV
Sbjct: 190 IYKERANKDRDTILKYVHKHLEHLGKPKTDIADEFVDRFVRNCRDLKVVRTRSVADEYSNPDLEHIQEQYIDWTALEEGKNEDENEEVEKPFDPKN---INWYWAFRSLDQFVNQFKRLPGISKDQV 313 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24642.6683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24642.6683.1 >prot_H-paniculata_contig24642.6683.1 ID=prot_H-paniculata_contig24642.6683.1|Name=mRNA_H-paniculata_contig24642.6683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp GLYKDKAAKDRESLLALVDASLLAFGRPKGDVPKEEVDIFCKNARKIMAVback to top mRNA from alignment at H-paniculata_contig24642:240..3059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24642.6683.1 ID=mRNA_H-paniculata_contig24642.6683.1|Name=mRNA_H-paniculata_contig24642.6683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2820bp|location=Sequence derived from alignment at H-paniculata_contig24642:240..3059- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24642:240..3059- >mRNA_H-paniculata_contig24642.6683.1 ID=mRNA_H-paniculata_contig24642.6683.1|Name=mRNA_H-paniculata_contig24642.6683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig24642:240..3059- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |