mRNA_H-paniculata_contig24564.6658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24564.6658.1
Unique NamemRNA_H-paniculata_contig24564.6658.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: D8LBM3_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.080e-29
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTKR 219
            GSVLQYSIF CTRVNSALTT+VVGC KNLLTT+VGM+G+G DY +E  NC G+ +SM GSFLYSWAKV KR
Sbjct:  297 GSVLQYSIFRCTRVNSALTTSVVGCAKNLLTTVVGMLGMGDDYEFEALNCAGMVVSMGGSFLYSWAKVMKR 367          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A7S4D794_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D794_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 8.290e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTK 216
            GSVL Y+IFVCT VNSALTTAVVGC+KN+ TT +GM  L GDY +   N +G+ IS+ GS +YS+ K T+
Sbjct:  102 GSVLNYAIFVCTSVNSALTTAVVGCLKNVATTFLGM--LLGDYIFAWVNFIGINISLFGSLVYSYGKFTE 169          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: UPI001E6754E4 (UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6754E4)

HSP 1 Score: 83.6 bits (205), Expect = 1.740e-17
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTKR 219
            G +L YS+ +CT+ NSALTT ++GC+KN+  T +GM+ +GGDY + L N +GL IS+ GS +YSW   TK+
Sbjct:  232 GFILMYSVMICTQFNSALTTTIIGCLKNIFITYLGMI-IGGDYVFSLYNFIGLNISIGGSIVYSWVTFTKK 301          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A4W3JZ47_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JZ47_CALMI)

HSP 1 Score: 78.6 bits (192), Expect = 3.490e-17
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTKR 219
            G +L YS  +CT+ NSALTT +VGC+KN+L T +GMV LGGDY +   N +GL IS+AGS +YS+   T++
Sbjct:   27 GFILMYSTLLCTQYNSALTTTIVGCIKNILVTYIGMV-LGGDYIFTWTNFIGLNISIAGSLVYSYITFTEQ 96          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A0S7F564_9TELE (S35D2 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7F564_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 5.750e-17
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTKR 219
            G VL YSI +CT++NSALTT+++GC+KN+L T +GMV  GGDY +   N +GL IS+AGS +YS+   T++
Sbjct:   75 GFVLMYSIMLCTQLNSALTTSIIGCIKNILVTYIGMV-FGGDYIFTWLNFLGLNISIAGSLVYSYITFTQQ 144          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A8J2WZY0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZY0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.310e-17
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTKR 219
            G VLQY+IFVCT+ NSALTT VVG +KN+ TT VGM  LGGDY Y L N  G+ +S   S +YSWA +  R
Sbjct:  258 GPVLQYAIFVCTQHNSALTTTVVGALKNVATTYVGMF-LGGDYAYSLVNFAGITVSCVASLVYSWAVLLGR 327          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A444TVP4_ARMVU (UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TVP4_ARMVU)

HSP 1 Score: 79.3 bits (194), Expect = 8.730e-17
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSW 201
            G +L YSI +CT+ NSALTT ++GC+KN+L T +G++ +GGDY Y + N VGL IS+ GS +YSW
Sbjct:   97 GFILMYSIMLCTQHNSALTTTIIGCLKNILVTYLGII-IGGDYVYSIYNFVGLNISILGSVVYSW 160          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A444U5R2_ACIRT (UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U5R2_ACIRT)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-16
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTK 216
            G VL YS FVCT+ NSALTT +VGC+KN+L T +GMV  GGDY +   N +GL IS+AGS +YS+   T+
Sbjct:  183 GFVLMYSTFVCTQYNSALTTTIVGCIKNILVTYIGMV-FGGDYIFSWTNFIGLNISIAGSLVYSYITFTE 251          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A0D2WIM4_CAPO3 (Solute carrier family 35 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WIM4_CAPO3)

HSP 1 Score: 82.0 bits (201), Expect = 1.200e-16
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAK 207
            G +L YSIF+CT+ NS LTT VVGC+KN+LTT +GM  LGGDY + + N VGL IS++GS  YS+ K
Sbjct:  328 GLILNYSIFLCTKANSPLTTTVVGCLKNILTTYLGMF-LGGDYIFSMANFVGLNISVSGSVYYSYVK 393          
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Match: A0A3Q2XFX1_HIPCM (UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-like n=5 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XFX1_HIPCM)

HSP 1 Score: 80.5 bits (197), Expect = 1.470e-16
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    7 GSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELKNCVGLAISMAGSFLYSWAKVTK 216
            G +L YSI +CT+ NSALTT++VGC+KN++ T VGMV LGGDY +   N +GL IS+AGS +YS+   TK
Sbjct:  184 GFILMYSIMLCTQHNSALTTSIVGCIKNIVVTYVGMV-LGGDYIFSWTNFIGLNISIAGSLVYSFITFTK 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24564.6658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM3_ECTSI3.080e-2976.06TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4D794_HETAK8.290e-1860.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001E6754E41.740e-1750.70UDP-glucuronic acid/UDP-N-acetylgalactosamine tran... [more]
A0A4W3JZ47_CALMI3.490e-1753.52Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A0S7F564_9TELE5.750e-1753.52S35D2 n=2 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A8J2WZY0_9STRA7.310e-1759.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A444TVP4_ARMVU8.730e-1755.38UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose tr... [more]
A0A444U5R2_ACIRT1.040e-1657.14UDP-glucuronic acid/UDP-N-acetylgalactosamine tran... [more]
A0A0D2WIM4_CAPO31.200e-1659.70Solute carrier family 35 n=1 Tax=Capsaspora owczar... [more]
A0A3Q2XFX1_HIPCM1.470e-1657.14UDP-glucuronic acid/UDP-N-acetylgalactosamine tran... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24564contigH-paniculata_contig24564:954..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue6e-24
Seed eggNOG ortholog2880.D8LBM3
KEGG koko:K15281
KEGG TC2.A.7.15
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG5070@1,KOG1444@2759
COG Functional cat.GOU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.0246816-CDS-H-paniculata_contig24564:953..11751622929713.0246816-CDS-H-paniculata_contig24564:953..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24564 954..1175 +
1691480978.4198081-CDS-H-paniculata_contig24564:953..11751691480978.4198081-CDS-H-paniculata_contig24564:953..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24564 954..1175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24564.6658.1prot_H-paniculata_contig24564.6658.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24564 954..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24564.6658.1

>prot_H-paniculata_contig24564.6658.1 ID=prot_H-paniculata_contig24564.6658.1|Name=mRNA_H-paniculata_contig24564.6658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MSGSVLQYSIFVCTRVNSALTTAVVGCMKNLLTTLVGMVGLGGDYHYELK
NCVGLAISMAGSFLYSWAKVTKR*
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mRNA from alignment at H-paniculata_contig24564:954..1175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24564.6658.1 ID=mRNA_H-paniculata_contig24564.6658.1|Name=mRNA_H-paniculata_contig24564.6658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig24564:954..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGCTCCGTTTTGCAGTATTCGATCTTCGTGTGCACGCGCGTGAA CTCGGCCTTGACAACTGCTGTGGTTGGGTGCATGAAGAACCTGCTAACCA CGTTAGTGGGGATGGTGGGCCTGGGGGGAGACTACCACTACGAGTTAAAA AATTGCGTAGGCTTGGCTATCAGTATGGCGGGATCGTTCTTGTACTCGTG GGCGAAAGTGACGAAACGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24564:954..1175+

>mRNA_H-paniculata_contig24564.6658.1 ID=mRNA_H-paniculata_contig24564.6658.1|Name=mRNA_H-paniculata_contig24564.6658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig24564:954..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGCTCCGTTTTGCAGTATTCGATCTTCGTGTGCACGCGCGTGAA
CTCGGCCTTGACAACTGCTGTGGTTGGGTGCATGAAGAACCTGCTAACCA
CGTTAGTGGGGATGGTGGGCCTGGGGGGAGACTACCACTACGAGTTAAAA
AATTGCGTAGGCTTGGCTATCAGTATGGCGGGATCGTTCTTGTACTCGTG
GGCGAAAGTGACGAAACGATGAATGTCAGGCTCCGTTTTGCAGTATTCGA
TCTTCGTGTGCACGCGCGTGAACTCGGCCTTGACAACTGCTGTGGTTGGG
TGCATGAAGAACCTGCTAACCACGTTAGTGGGGATGGTGGGCCTGGGGGG
AGACTACCACTACGAGTTAAAAAATTGCGTAGGCTTGGCTATCAGTATGG
CGGGATCGTTCTTGTACTCGTGGGCGAAAGTGACGAAACGATGA
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