mRNA_H-paniculata_contig24549.6653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24549.6653.1
Unique NamemRNA_H-paniculata_contig24549.6653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24549.6653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24549contigH-paniculata_contig24549:2478..2935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24549.6653.1prot_H-paniculata_contig24549.6653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24549 2478..2812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.887321-CDS-H-paniculata_contig24549:2477..26311622929711.887321-CDS-H-paniculata_contig24549:2477..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24549 2478..2631 +
1691480978.0564225-CDS-H-paniculata_contig24549:2477..26311691480978.0564225-CDS-H-paniculata_contig24549:2477..2631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24549 2478..2631 +
1622929711.9000869-CDS-H-paniculata_contig24549:2744..28121622929711.9000869-CDS-H-paniculata_contig24549:2744..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24549 2745..2812 +
1691480978.0669932-CDS-H-paniculata_contig24549:2744..28121691480978.0669932-CDS-H-paniculata_contig24549:2744..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24549 2745..2812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.9129071-UTR-H-paniculata_contig24549:2812..29351622929711.9129071-UTR-H-paniculata_contig24549:2812..2935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24549 2813..2935 +
1691480978.0755618-UTR-H-paniculata_contig24549:2812..29351691480978.0755618-UTR-H-paniculata_contig24549:2812..2935Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24549 2813..2935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24549.6653.1

>prot_H-paniculata_contig24549.6653.1 ID=prot_H-paniculata_contig24549.6653.1|Name=mRNA_H-paniculata_contig24549.6653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig24549:2478..2935+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24549.6653.1 ID=mRNA_H-paniculata_contig24549.6653.1|Name=mRNA_H-paniculata_contig24549.6653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig24549:2478..2935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24549:2478..2935+

>mRNA_H-paniculata_contig24549.6653.1 ID=mRNA_H-paniculata_contig24549.6653.1|Name=mRNA_H-paniculata_contig24549.6653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig24549:2478..2935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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