mRNA_H-paniculata_contig2452.6647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2452.6647.1
Unique NamemRNA_H-paniculata_contig2452.6647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.640e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query:    1 LYQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            LY LL++DRRATP E+KRAYRNKSL+MHPDKLNQRGQEVTEQDRA FQKMK AYDVLSDP KRE+YDQLGE
Sbjct:   22 LYSLLDLDRRATPAEVKRAYRNKSLQMHPDKLNQRGQEVTEQDRANFQKMKSAYDVLSDPSKRELYDQLGE 92          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A1E7FJY6_9STRA (J domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJY6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.220e-23
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            YQLL+++R ATP EIK+AY+ +SL+MHPDKL QRG+ VTE+ +AKF +MK AY++LSDP KRE YD +GE
Sbjct:    2 YQLLDIERDATPEEIKKAYKRQSLQMHPDKLAQRGEVVTEELQAKFTRMKEAYEILSDPHKRETYDAIGE 71          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7S1YWS1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWS1_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 1.870e-20
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y LL V+  ATP E+KRAY+ +SLEMHPDKL QRG+EVT +D+A+F +MK AY+VLSDP KRE YD +GE
Sbjct:   28 YDLLGVENDATPEELKRAYKRRSLEMHPDKLAQRGREVTPEDQARFTRMKEAYEVLSDPHKRETYDAIGE 97          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7S0BVJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVJ0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.370e-20
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y++L +D   +  EIKRAY+ +SL MHPDKL Q+GQ VT+ D+A+FQ+MK AY+VLSDP KRE YD +GE
Sbjct:   32 YEMLMIDNDVSQDEIKRAYKRQSLMMHPDKLAQKGQAVTDDDQARFQRMKDAYEVLSDPHKRETYDAIGE 101          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7R9ZE87_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZE87_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.650e-20
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y LL VD  ATP EIK+AY+ +SL MHPDKL QRG+EVT +D+ +F +MK AY++LSDP KRE YD LGE
Sbjct:   29 YTLLGVDADATPDEIKKAYKRRSLVMHPDKLAQRGKEVTPEDQERFTRMKEAYEILSDPHKRESYDALGE 98          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7S2RGW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGW1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.770e-20
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y LL V++ AT  EIKRAY+ +SL+MHPDKL Q+G+ VTE D+A+F +MK AY+VLSDP KRE YD +GE
Sbjct:    9 YDLLGVEKDATQDEIKRAYKRQSLQMHPDKLAQKGRTVTEVDQARFTRMKEAYEVLSDPHKRETYDAIGE 78          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7S4JN11_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JN11_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.650e-20
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y +L +D  ATP EIK+AY+ +SLEMHPDKL QRG+EVT +D+A+F +MK AY++LSDP KRE YD LGE
Sbjct:   29 YSILGIDDDATPEEIKKAYKRRSLEMHPDKLAQRGKEVTPEDQARFTRMKEAYEILSDPHKRESYDALGE 98          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A448ZRQ1_9STRA (J domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRQ1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.740e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y LL V+  ATP +IKRAY+ +SL+MHPDKL QRG+ VT++DRA+F +MK AY+ LSDP KRE YD +GE
Sbjct:   30 YGLLGVESDATPDQIKRAYKRRSLQMHPDKLAQRGKPVTDEDRARFTRMKDAYECLSDPHKRETYDAIGE 99          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: A0A7S4UY41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UY41_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.260e-18
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLGE 213
            Y+LL ++  A+P EIKRAY+ +SL+MHPDKL QRG++VTE D+A+F +MK AY+VLSDP KR  YD +GE
Sbjct:   27 YELLGLEHDASPEEIKRAYKRQSLQMHPDKLAQRGKQVTEADQARFTRMKEAYEVLSDPHKRRTYDAVGE 96          
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Match: B7FY29_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FY29_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 3.550e-18
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    4 YQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKMKGAYDVLSDPQKREVYDQLG 210
            Y LL +DR A+  +IKRAY+ +SL+MHPDKL QRG  VT  D+ +F +MK AY++LSDP KRE YD +G
Sbjct:   18 YTLLNLDRDASVDDIKRAYKRQSLQMHPDKLAQRGHTVTAADQLRFTRMKEAYEILSDPYKREAYDAIG 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2452.6647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE1.640e-3185.92J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A1E7FJY6_9STRA2.220e-2364.29J domain-containing protein (Fragment) n=1 Tax=Fra... [more]
A0A7S1YWS1_TRICV1.870e-2065.71Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0BVJ0_9STRA2.370e-2060.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7R9ZE87_9STRA3.650e-2064.29Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2RGW1_9STRA4.770e-2062.86Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4JN11_9STRA5.650e-2064.29Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448ZRQ1_9STRA6.740e-1962.86J domain-containing protein n=1 Tax=Pseudo-nitzsch... [more]
A0A7S4UY41_9STRA1.260e-1861.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7FY29_PHATC3.550e-1857.97Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2452contigH-paniculata_contig2452:796..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.8e-26
Seed eggNOG ortholog2880.D7G6F0
KEGG koko:K10752
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.0394614-CDS-H-paniculata_contig2452:795..8431622929711.0394614-CDS-H-paniculata_contig2452:795..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2452 796..843 -
1691480977.6746616-CDS-H-paniculata_contig2452:795..8431691480977.6746616-CDS-H-paniculata_contig2452:795..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2452 796..843 -
1622929711.0522397-CDS-H-paniculata_contig2452:1333..14981622929711.0522397-CDS-H-paniculata_contig2452:1333..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2452 1334..1498 -
1691480977.692734-CDS-H-paniculata_contig2452:1333..14981691480977.692734-CDS-H-paniculata_contig2452:1333..1498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2452 1334..1498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2452.6647.1prot_H-paniculata_contig2452.6647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2452 796..1498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2452.6647.1

>prot_H-paniculata_contig2452.6647.1 ID=prot_H-paniculata_contig2452.6647.1|Name=mRNA_H-paniculata_contig2452.6647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
LYQLLEVDRRATPVEIKRAYRNKSLEMHPDKLNQRGQEVTEQDRAKFQKM
KGAYDVLSDPQKREVYDQLGE
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mRNA from alignment at H-paniculata_contig2452:796..1498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2452.6647.1 ID=mRNA_H-paniculata_contig2452.6647.1|Name=mRNA_H-paniculata_contig2452.6647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig2452:796..1498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTATCAGCTGCTGGAGGTGGACCGGCGGGCTACCCCGGTGGAAATCAA GCGCGCCTATCGAAACAAGTCGCTGGAGATGCACCCGGACAAGCTCAACC AGAGGGGGCAAGAGGTCACAGAGCAAGACAGGGCTAAATTCCAAAAGATG AAGGGAGCATACGATGTAAGTTTTATCTGGTTTCAGTATTTGTTTTTGGG TGTATTATCTGAATTTCTCGCAGTGTTAGTAATAGGATCATAGTCATTCC CTCATGTGGGCGAGTGGACGTACTATAGGTGCAGACAATTCCATTCGGTC ATTTTAAAATCATGGCGTCACGGTATATGGCCATGTGACACGGCCGTAAT GGTCGGGGGGTGCTCCTTCATATCTGTTCGCTTGATGATGTGTGCCGTAC ATGAAACCAGGAGCATTTGCTTCTTTTTTTTTTCGGCGGTGCTGATGCGT TTGTTTGTTTTTTTCTGGCTTTGTTGTGTGTTGTACAATAATATTTGGTG ATTTTTTTTATGTTACCAAAAAATGCTGTCGGATCGTGTGTTGCTGTTGT TGTGATTTATTGGCTTGATTTTTTTTTTTTTACGTTATAGAGATATATGT TTTAGTTTTATAAATTATTATATCATCAATGTTGGATTTTTTTTTTTTTT GAAAGGTACTATCTGATCCTCAAAAGCGAGAGGTGTACGACCAGCTGGGG GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2452:796..1498-

>mRNA_H-paniculata_contig2452.6647.1 ID=mRNA_H-paniculata_contig2452.6647.1|Name=mRNA_H-paniculata_contig2452.6647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2452:796..1498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTATCAGCTGCTGGAGGTGGACCGGCGGGCTACCCCGGTGGAAATCAA
GCGCGCCTATCGAAACAAGTCGCTGGAGATGCACCCGGACAAGCTCAACC
AGAGGGGGCAAGAGGTCACAGAGCAAGACAGGGCTAAATTCCAAAAGATG
AAGGGAGCATACGATCTCTATCAGCTGCTGGAGGTGGACCGGCGGGCTAC
CCCGGTGGAAATCAAGCGCGCCTATCGAAACAAGTCGCTGGAGATGCACC
CGGACAAGCTCAACCAGAGGGGGCAAGAGGTCACAGAGCAAGACAGGGCT
AAATTCCAAAAGATGAAGGGAGCATACGATGTACTATCTGATCCTCAAAA
GCGAGAGGTGTACGACCAGCTGGGGGAGGTACTATCTGATCCTCAAAAGC
GAGAGGTGTACGACCAGCTGGGGGAG
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