mRNA_H-paniculata_contig24409.6610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24409.6610.1
Unique NamemRNA_H-paniculata_contig24409.6610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 2.190e-126
Identity = 189/247 (76.52%), Postives = 217/247 (87.85%), Query Frame = 1
Query:   40 FYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELKTMLCERINKERQTS 780
            FYRT+TK KP+ RG+VGL+NLGNTCFMNSMLQCLL+TESLSTYFR+  WK E+NE NPLGMGGK+A AYA LND  WSGEYSVVVPN +K+VV+QYAPMF+GY QHDA ELMSFLLDGIHEDLNRVHKKPYME VDSAGR D V+A+ESWRRYLMRNDS+MVD CTGLLRSHVTCP C  +SVTFDPYTSLSLPLP + A+MV+VLFHP+PYG+RPM +A TL K++ VR+LKT +C+R N+ER  S
Sbjct:  527 FYRTNTKAKPITRGAVGLSNLGNTCFMNSMLQCLLATESLSTYFRSQHWKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKKPYMETVDSAGRADRVVAEESWRRYLMRNDSVMVDTCTGLLRSHVTCPECNLSSVTFDPYTSLSLPLPFDTAVMVKVLFHPLPYGSRPMEVAVTLQKDNTVRDLKTAICQRYNQERPQS 773          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A836CC49_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC49_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.500e-80
Identity = 123/204 (60.29%), Postives = 154/204 (75.49%), Query Frame = 1
Query:   16 SGSFSTGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLP 627
            SG +S G   R +T G P   G+VGL NLGNTCFMNSMLQCL +T +L+ YF++  W  ++NE N LG  GK+A AYA+L   +W G Y+ V P  LKRV+ ++AP F+GY Q D+ ELM FLLDG+HEDLNRV +KPY+E V+S GR DAV+A++SWRRYL+RNDS++VD C GLLRSHVTCP C + S+TFD YT LSLPLP
Sbjct:   37 SGGYSWGE--RGNTVGTPAEPGAVGLHNLGNTCFMNSMLQCLSATGALTAYFKSGGWSVDLNEDNALGADGKMARAYAELVRNLWDGRYTQVAPAALKRVIGEHAPAFAGYQQQDSQELMIFLLDGLHEDLNRVRRKPYVEAVESDGRPDAVVAEDSWRRYLLRNDSVLVDRCHGLLRSHVTCPACNYESITFDAYTCLSLPLP 238          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A6S8CHP7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CHP7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.260e-74
Identity = 125/239 (52.30%), Postives = 160/239 (66.95%), Query Frame = 1
Query:   25 FSTGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAW-KNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELK 738
            F + ++ R H KG P A G+VGL+NLGNTCFMNSMLQCL  T+ L  YF N    ++E+NE NPLG GG +A AYAD     WSG+Y+++VP  LK+ V Q A  F GY Q D+ E MS+LLDG+HEDLNRV KKPY+E ++S GR D V+A+ESW R+ +RN SI++D   GLLRSH+TCP C H S+TFDPY +LSLPLP      + +       G+RP      LS    + +LK
Sbjct:  459 FLSQSYGRPHHKGTPPAPGAVGLSNLGNTCFMNSMLQCLSHTKQLREYFLNAERVQSELNEDNPLGSGGNIARAYADFISDSWSGDYAIIVPTILKKAVGQQASQFLGYQQQDSQEFMSYLLDGLHEDLNRVRKKPYIETLESNGRPDQVVANESWDRFQLRNKSIIIDTFYGLLRSHITCPNCGHESITFDPYNTLSLPLPSAKIRRITITLSRAD-GSRPTKYLVQLSSRDTITQLK 696          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A7R9YEL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEL1_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.060e-73
Identity = 119/232 (51.29%), Postives = 157/232 (67.67%), Query Frame = 1
Query:   58 KGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELKTMLCE 753
            +GKP   G+VGL NLGNTCFMNSMLQC+  T  L+ +F N  W++++N+ NPLGM GK+A  YAD    VW G ++VV P  LKR V  + P F+GY Q D+ E MSFLLDG+HEDLNR H+KPY E V+S GR D  +A E WRR+L+RNDS++VD C GLLRSH+TC  C + S+TFDP+ SLSLPLPV +   V+++  P      P  M   +   + + ++K  + E
Sbjct:  500 RGKPPIAGAVGLKNLGNTCFMNSMLQCISHTPQLTGFFLNGGWRDDVNKSNPLGMQGKLATVYADFLKDVWGGNHTVVAPTTLKRTVGTFNPTFAGYAQQDSQEFMSFLLDGLHEDLNRNHEKPYTEQVESKGRPDEEVAKEQWRRHLLRNDSVVVDNCHGLLRSHLTCCKCGYNSITFDPFLSLSLPLPVNNTRRVDLVVMPAALSENPYRMTVDMQTNACLGDVKRWIAE 731          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A7S2W2S4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2S4_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.650e-71
Identity = 122/237 (51.48%), Postives = 160/237 (67.51%), Query Frame = 1
Query:   46 RTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSA-GREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDA-----IMVEVLFHPMPY-GTRPMMMAFTLSKESKVREL 735
            R    G+P+A G+VGL NLGNTCFMNSMLQC+  T  L+ +F    +K ++N +N LG GGK+ EAY++L   +WS  YS + P   K V+ ++AP F+GY QHD+ E MSFL+DGIHEDLNRV KKPY E V+   G+ D  +A+E+WRR+L+RNDS++VD C GLLRSH+ CP C+H SVTFDPY SLSLPLP          ++ V F P+P  G +   M  T+     VR+L
Sbjct:  456 RASVTGEPVASGAVGLINLGNTCFMNSMLQCVAQTPLLTPFFLEGKFKGDLNRRNALGTGGKLTEAYSELLKKIWSSSYSTLAPKEFKAVLGKHAPQFAGYQQHDSQEFMSFLMDGIHEDLNRVKKKPYTEVVEGGDGKPDEEVANEAWRRHLLRNDSVIVDHCEGLLRSHLVCPKCKHESVTFDPYMSLSLPLPTASRRAARNTVLSVTFVPLPSKGGKLRPMDLTVPSRGTVRDL 692          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A2C9JIB0_BIOGL (Ubiquitinyl hydrolase 1 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JIB0_BIOGL)

HSP 1 Score: 243 bits (621), Expect = 1.660e-71
Identity = 117/233 (50.21%), Postives = 161/233 (69.10%), Query Frame = 1
Query:   40 FYRTHTKGKPLAR-GSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVREL 735
            +Y T++     ++ G  GL NLGNTCFMNS LQC+L+   L+ Y  +  W+ E+N++NPLGM G+VA  YA+L   VWSG+ S  VP + K  V ++AP FSGY Q D+ ELM+FLLDG+HEDLNR+ KKPY+E  DS GR D ++A E+W  Y  RNDS++VD+  GLL+S V CP C+  SVTFDP+ +LSLPLPV+    +EV++ P+P   +PM +  T+ K   +R+L
Sbjct:  273 YYNTYSDRSGTSKPGLCGLANLGNTCFMNSALQCMLNVSRLTDYMLSGKWEKELNKENPLGMKGEVAITYAELVRDVWSGQRSYTVPRNFKVAVGRFAPQFSGYQQQDSQELMAFLLDGLHEDLNRIRKKPYIELKDSGGRPDKIVAKEAWDNYKKRNDSVIVDIFHGLLKSTVRCPDCEKISVTFDPFCNLSLPLPVKKERQMEVIWVPLPPEKKPMQLKLTVPKTGSIRDL 505          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A7S1XMK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMK1_9STRA)

HSP 1 Score: 246 bits (628), Expect = 4.180e-71
Identity = 122/231 (52.81%), Postives = 157/231 (67.97%), Query Frame = 1
Query:   34 GTF-YRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESK 723
            GT+ Y + T+G+P   G+VGL NLGNTCFMNSMLQC+  T  L+++F    W+ ++N+ NPLGM GK+A  YAD    VW G ++VV P  LKR V  + P F+GY Q D+ E MSFLLDG+HEDLNR   KPY E V+S GR DA +A E WRR+L+RNDS++VD C GLLRSH+TC  C + S+TFDP+ SLSLPLPV +   V +    +    RP  M  T+  ES+
Sbjct:  496 GTYGYDSGTRGRPPVAGAVGLRNLGNTCFMNSMLQCISHTPQLTSFFLGGEWRKDVNKDNPLGMNGKLATVYADFLKDVWGGNHTVVAPTGLKRTVGNFNPTFAGYAQQDSQEFMSFLLDGLHEDLNRNQTKPYTEQVESKGRPDAEVAAEQWRRHLLRNDSVVVDHCHGLLRSHLTCCKCSNDSITFDPFLSLSLPLPVHNTRAVSIFLLRVDLSLRPEKM--TVDMESR 724          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A397CIK1_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CIK1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 4.870e-71
Identity = 114/206 (55.34%), Postives = 150/206 (72.82%), Query Frame = 1
Query:   28 STGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNL------AWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLP 627
            S+  ++ T    K   +G VGL NLGNTCF+NS+LQCL +++ L  YF          +  E+N +NPLGMGGK+A+AYA L + +WSGE  VV P+ LK V+ +YAP F+GY QHD+ E++SF+LDGIHEDLNRV +KPY +P++ AGR DA +A+E W  YL+RNDS++VD C   LRSHVTCP CQ+ S+TFDPY SLSLP+P
Sbjct:  559 SSSGYHSTKYTAKAEFQGVVGLQNLGNTCFLNSVLQCLSNSKPLLDYFFQTDNDGGRVYMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEKPYTKPIEHAGRPDADVAEEEWANYLLRNDSVVVDHCMAQLRSHVTCPSCQNESITFDPYMSLSLPVP 764          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A8B6DHW2_MYTGA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DHW2_MYTGA)

HSP 1 Score: 239 bits (610), Expect = 1.970e-70
Identity = 118/253 (46.64%), Postives = 165/253 (65.22%), Query Frame = 1
Query:   10 SGSGSFSTGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELKTMLCERINKE 768
            SG G  S G +     +G  +A G  GL+NLGNTCFMNS +QC+ +   L+ Y  +  W +E+NE NPLGMGG++A++YA+L   +WSG+YS  VP + K  V ++AP FSGY Q D+ EL++FLLDG+HEDLNR+HKKPY+E  D+  R D ++A ESW  Y  RNDS++VD   GLL+S V CP C   SVTFDP+  LSLPLPV+    +E+ + P+    +P+     + K   V ++  +L E++  E
Sbjct:   83 SGYGGSSYGYYGXDQGRGGSVAPGLCGLSNLGNTCFMNSAIQCMSNVPKLTEYLLSDRWISEVNESNPLGMGGEIAKSYAELIKVMWSGKYSHTVPRNFKVAVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRIHKKPYIEQKDTDDRPDELVAKESWENYRKRNDSVIVDTFHGLLKSTVHCPECDKISVTFDPFCYLSLPLPVKKERQLEIFWVPLSPEKKPVQFKLIVPKMGSVLDMCKILSEKVGVE 335          
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Match: A0A397DTH8_9STRA (USP domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DTH8_9STRA)

HSP 1 Score: 244 bits (622), Expect = 2.270e-70
Identity = 122/246 (49.59%), Postives = 168/246 (68.29%), Query Frame = 1
Query:   28 STGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLSTESLSTYFRNL------AWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPNHLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDSAGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDPYTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELKTML 747
            S+  ++ T    K   +G VGL NLGNTCF+NS+LQCL +++ L  YF          +  E+N +NPLGMGGK+A+AYA L + +WSGE  VV P+ LK V+ +YAP F+GY QHD+ E++SF+LDGIHEDLNRV +KPY +P++ AGR DA +A+E W  YL+RNDS++VD C   LRSHVTCP CQ+ S+TFDPY SLSLP+P +  +++ +  H +  G+RP      + KE    ++K  L
Sbjct:  516 SSSGYHSTKYTAKAEFQGVVGLQNLGNTCFLNSVLQCLSNSKPLLDYFFQTDNDGGRVYMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEKPYTKPIEHAGRPDADVAEEEWANYLLRNDSVVVDHCMAQLRSHVTCPSCQNESITFDPYMSLSLPVPNQAWVLLTL--HGI--GSRPTQFGLHVPKEGVYADVKAAL 757          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24409.6610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S6_ECTSI2.190e-12676.52Similar to ubiquitin specific peptidase 15 n=2 Tax... [more]
A0A836CC49_9STRA2.500e-8060.29Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A6S8CHP7_9STRA3.260e-7452.30Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9YEL1_9STRA1.060e-7351.29Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2W2S4_9STRA1.650e-7151.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2C9JIB0_BIOGL1.660e-7150.21Ubiquitinyl hydrolase 1 n=1 Tax=Biomphalaria glabr... [more]
A0A7S1XMK1_9STRA4.180e-7152.81Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A397CIK1_9STRA4.870e-7155.34USP domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A8B6DHW2_MYTGA1.970e-7046.64Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Myti... [more]
A0A397DTH8_9STRA2.270e-7049.59USP domain-containing protein (Fragment) n=3 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24409contigH-paniculata_contig24409:93..3507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.1
Seed ortholog evalue1.6e-108
Seed eggNOG ortholog2880.D7G0S6
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons6
Model size780
Cds size780
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24409.6610.1prot_H-paniculata_contig24409.6610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24409 93..3507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.8924727-CDS-H-paniculata_contig24409:92..2271622929705.8924727-CDS-H-paniculata_contig24409:92..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 93..227 -
1691480975.2133486-CDS-H-paniculata_contig24409:92..2271691480975.2133486-CDS-H-paniculata_contig24409:92..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 93..227 -
1622929705.9071584-CDS-H-paniculata_contig24409:659..7671622929705.9071584-CDS-H-paniculata_contig24409:659..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 660..767 -
1691480975.224215-CDS-H-paniculata_contig24409:659..7671691480975.224215-CDS-H-paniculata_contig24409:659..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 660..767 -
1622929705.923395-CDS-H-paniculata_contig24409:1503..16141622929705.923395-CDS-H-paniculata_contig24409:1503..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 1504..1614 -
1691480975.2327883-CDS-H-paniculata_contig24409:1503..16141691480975.2327883-CDS-H-paniculata_contig24409:1503..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 1504..1614 -
1622929705.945503-CDS-H-paniculata_contig24409:1970..21321622929705.945503-CDS-H-paniculata_contig24409:1970..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 1971..2132 -
1691480975.2514412-CDS-H-paniculata_contig24409:1970..21321691480975.2514412-CDS-H-paniculata_contig24409:1970..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 1971..2132 -
1622929705.9598985-CDS-H-paniculata_contig24409:2570..27091622929705.9598985-CDS-H-paniculata_contig24409:2570..2709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 2571..2709 -
1691480975.2674747-CDS-H-paniculata_contig24409:2570..27091691480975.2674747-CDS-H-paniculata_contig24409:2570..2709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 2571..2709 -
1622929705.9719038-CDS-H-paniculata_contig24409:3382..35071622929705.9719038-CDS-H-paniculata_contig24409:3382..3507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 3383..3507 -
1691480975.2762196-CDS-H-paniculata_contig24409:3382..35071691480975.2762196-CDS-H-paniculata_contig24409:3382..3507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24409 3383..3507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24409.6610.1

>prot_H-paniculata_contig24409.6610.1 ID=prot_H-paniculata_contig24409.6610.1|Name=mRNA_H-paniculata_contig24409.6610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
RQRSGSGSFSTGTFYRTHTKGKPLARGSVGLTNLGNTCFMNSMLQCLLST
ESLSTYFRNLAWKNEMNEKNPLGMGGKVAEAYADLNDAVWSGEYSVVVPN
HLKRVVAQYAPMFSGYNQHDAGELMSFLLDGIHEDLNRVHKKPYMEPVDS
AGREDAVIADESWRRYLMRNDSIMVDVCTGLLRSHVTCPMCQHASVTFDP
YTSLSLPLPVEDAIMVEVLFHPMPYGTRPMMMAFTLSKESKVRELKTMLC
ERINKERQTS
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mRNA from alignment at H-paniculata_contig24409:93..3507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24409.6610.1 ID=mRNA_H-paniculata_contig24409.6610.1|Name=mRNA_H-paniculata_contig24409.6610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3415bp|location=Sequence derived from alignment at H-paniculata_contig24409:93..3507- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAACGATCCGGCAGCGGGTCATTCTCCACGGGCACATTTTACAGGAC CCATACTAAGGGGAAGCCTCTCGCCCGGGGATCTGTAGGTCTGACAAACC TCGGAAATACTTGCTTCATGAACAGGTGTGTTTGTCATGGGTGCCTGAAT GCATACTTCGTGATTGCCTTGTAGTTGTTCACAAATGTTGCTGATGAATA TATCTCAGGTCATAATTTTAGGCTATATCATACCTATATATATATATATA TTTATATATAATCAGAAGGATAATAGGTTGATGTAAATTCTAAATCAGGA AATTGGTCGATCGGGCAGTAAGGGTCAGTTCTAGCGACTAAGGATATTTT TGGCAGTATGATAATCTGGGATCTTGAAGTGAGACAGGAAAATGACGAAA TTCCAAGGCTTATCACGGGACATTTATGGGACCTGACGGGACGAAGAGGC TTAATATTTCGACGGCTCAGGTTGGAACAGTGTGGTCGAGATTTGGCCGA GAGGAGACTGTCGTCTCCTGACAGTCCCCGTGAGAATACCTTGATCTCGT GGTAACCCCCCAAAAAATTCCCAGGTTGAAAAAAAAAAAAATCCTCATGA AGTCGATTCTGTTGATATGACCCAAACGTTAAATTCGGCCCCGTTCGGGA TTTCGAGTCCTGCGAATTTCGGCTCTTGAAGTCGGATGCGCATGTATCGC AGGTGATCCCGACGCACTCAAGCATCCACCCACTTACCGACTCCATGCCC CCCAACTGACTGACATGCTGTGGCGATTTGTTCCCGTCAAAATGACAGCA TGTTGCAGTGCCTGCTGTCGACAGAGTCTCTGTCGACGTACTTCCGCAAC TTGGCGTGGAAGAACGAAATGAACGAGAAGAACCCTCTAGGCATGGGGGG CAAAGTGGCGGAGGCGTATGCTGATCTCAACGACGCGGTTAGTCTTGATC TTATTGATGGATTATGGTCTTGCCTTGAAGTAGTCTCGTCTTGTTATTGT TGTTGTTGTTGTTGTTGTTGTTCACACCGCCCAGTACGTTTTGGTCTGTT TTTCACAAAATGCAATCAGGTCAAGAACCCCTGCTACGCTGAGCTTATTG GAATCTAAGCTGAAATTTAGGAAGCCCAGAGTCTTGCGGTTACAGTACTA GGGAAATTTAAGAGTCAGATATTCTTGTTCGTCGTCTTACCTTCCGCACC TTGCTGATGAATTTTTTGTTGACTTGAGTACAGAACCATTTTTTTAAGTC AGCGGCATAACCTGTACATGGGTACAGCAGAGTCATATTATACGAGCTTC AGAGCCATGTTTCAACTGGTTCTGGCACCCTCCCTCCCTCTCTCCCGCCT TCCCGCCGCCTCTCCGGCACAACAGGTGTGGTCCGGCGAGTATTCGGTGG TCGTGCCGAACCATCTGAAGCGCGTGGTGGCTCAGTACGCGCCGATGTTC TCGGGGTACAACCAACATGACGCGGGGGAGCTCATGAGCTTTTTGCTGGA CGGGATTCACGAAGATCTGAATCGAGTGCATAAGAAGGTAGGCGGGCAGG CAGGTGGGCTGGCTGTTTTTTTTTTTTTTTTTCAGTCATGCCATGACGTT ATCATCCTTGTCCTGAGGTGTGGGGTTGGGCAGCGTGGGGGGGTGTGGTC ATGTTTTCCATGCTGTGCTGTTGGACCATTGACAACGGGTGAAGTTCTTA AGAAGACGGAATCATGTATTGGGGTGCGTTTGTCACAAGTGATGAGATGA TTATGGCTACACAGGTCCAATTTTTCTGTTTACTTGCGCCGTCAACTACA ATTACACTAGGGAATTTGCATGGTGTTAAGGGCCCTCCCCCCTCCGTCCC TCCCTTGGCGTGTCCATCTCTACACTTCTCTGAATGGTTGCAGCCGTACA TGGAACCCGTCGATTCGGCGGGGCGCGAGGACGCGGTAATCGCTGATGAG AGCTGGAGGCGTTACTTGATGCGGAATGATTCCATCATGGTGGACGTTTG CACGGTGGGTATCGGTTTTGCTGCGTTTCGTAGTCTCGAGCTTTGTGTTG CGGATTGGCTTCTTGTTGATCATTAAATTACAGTGGATATCTAATATGCA CAGTAGTACTGGATGTGAACAGGGCGTTTCTAGGCACATGGGGGGGGGGG AAGATTTGGACAGGACGAGACGTCCCGTAATAGTTAATTGTTGATTTATG TATAGGTCCTGTGTTTTCTCACGGGACAGCTTTGAGTTATTAGTTATTGT ATTAGTATTCACCATGGTTTAGATAATTGTTGCCGAGTTATTGAAGCCAG CCGAAATCACCCACGTTTTAATACCTTCGGGCTCCTCCTAATGCCGTCTT GATATTCGCGAGTAAAACGTTTGAGATCTTCCGTGTGATCGGATAGGAGA GATATGGTATCTATGGTTGCGAGAAGCATGGCCATGTAACTGCACGCATG GGTAGTCGTCGCGAGCGAAGGCTTCAGTCAATATCCGTGTTGTCATCCTC TAGTTTAGGTGCTTGTCCCTGAGTTCGATACAGTACCTGCTTACCTGTTT TTTCCTTTCCTCTTATTTCTATTCTTTTGCTCTACCCCCTCTTTTTTTTA GCCATGCCTTGATAGTTGATATATTTTTATTGCACGTGTGTAATTATTAC GATGATGTTCTCTCTATTGCTGCAATTCAGTTATTCTCTGCGCGCACGTT TTTTAGTTATTGTGTACACACGGCGTTTGTTTTGATTCAGGGCCTGTTGC GGTCACACGTTACGTGTCCGATGTGCCAGCACGCGAGCGTCACGTTCGAC CCGTACACGTCTCTCTCTCTGCCCCTCCCTGTTGAGGACGCCATCATGGT GAGGAAGCAGGGATGCCTTGACCTGGGTGGGGTTGCTTTGGCCTGGGTGG GACTTCTGTGGATAGGCAGGTCGAAGGGGGTTGTGATTCGTAATGTCCAT GGATGTGATGACCTCAACATGTGTACCTATCGCATGGTCGGGCTGAGAGA CCCTCACTGAATACTTTAGTTCATCTGCTCTTCGATGTGTTGGGATGTAT GTGTGCCTCCTGTCTTTCTTTTTTTCGAGAGTGCAATTAGTCCAGCTGGG GGGGGGGGGGGTATGACGTCGCGGTCTTGTGTGCGTTCGTGAGATGTAGA TAATGTTGCTACCGGGGTCCGGTGATCGGTCTAGTGTGTGTGGACAAGAT AGTCGCTCGTTCGCAGGGTCACTGTTTCTTGGGTGTGTTGTTCCACACCT TGACGGTTGATCCTCCCATGTGTGGTGCAGGTGGAGGTTTTGTTCCACCC GATGCCGTACGGTACCCGTCCGATGATGATGGCGTTCACGCTGTCCAAGG AGAGCAAGGTCAGGGAGTTGAAGACCATGCTCTGCGAAAGGATCAACAAG GAGCGGCAGACGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig24409:93..3507-

>mRNA_H-paniculata_contig24409.6610.1 ID=mRNA_H-paniculata_contig24409.6610.1|Name=mRNA_H-paniculata_contig24409.6610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig24409:93..3507- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAACGATCCGGCAGCGGGTCATTCTCCACGGGCACATTTTACAGGAC
CCATACTAAGGGGAAGCCTCTCGCCCGGGGATCTGTAGGTCTGACAAACC
TCGGAAATACTTGCTTCATGAACAGAGACAACGATCCGGCAGCGGGTCAT
TCTCCACGGGCACATTTTACAGGACCCATACTAAGGGGAAGCCTCTCGCC
CGGGGATCTGTAGGTCTGACAAACCTCGGAAATACTTGCTTCATGAACAG
CATGTTGCAGTGCCTGCTGTCGACAGAGTCTCTGTCGACGTACTTCCGCA
ACTTGGCGTGGAAGAACGAAATGAACGAGAAGAACCCTCTAGGCATGGGG
GGCAAAGTGGCGGAGGCGTATGCTGATCTCAACGACGCGCATGTTGCAGT
GCCTGCTGTCGACAGAGTCTCTGTCGACGTACTTCCGCAACTTGGCGTGG
AAGAACGAAATGAACGAGAAGAACCCTCTAGGCATGGGGGGCAAAGTGGC
GGAGGCGTATGCTGATCTCAACGACGCGGTGTGGTCCGGCGAGTATTCGG
TGGTCGTGCCGAACCATCTGAAGCGCGTGGTGGCTCAGTACGCGCCGATG
TTCTCGGGGTACAACCAACATGACGCGGGGGAGCTCATGAGCTTTTTGCT
GGACGGGATTCACGAAGATCTGAATCGAGTGCATAAGAAGGTGTGGTCCG
GCGAGTATTCGGTGGTCGTGCCGAACCATCTGAAGCGCGTGGTGGCTCAG
TACGCGCCGATGTTCTCGGGGTACAACCAACATGACGCGGGGGAGCTCAT
GAGCTTTTTGCTGGACGGGATTCACGAAGATCTGAATCGAGTGCATAAGA
AGCCGTACATGGAACCCGTCGATTCGGCGGGGCGCGAGGACGCGGTAATC
GCTGATGAGAGCTGGAGGCGTTACTTGATGCGGAATGATTCCATCATGGT
GGACGTTTGCACGCCGTACATGGAACCCGTCGATTCGGCGGGGCGCGAGG
ACGCGGTAATCGCTGATGAGAGCTGGAGGCGTTACTTGATGCGGAATGAT
TCCATCATGGTGGACGTTTGCACGGGCCTGTTGCGGTCACACGTTACGTG
TCCGATGTGCCAGCACGCGAGCGTCACGTTCGACCCGTACACGTCTCTCT
CTCTGCCCCTCCCTGTTGAGGACGCCATCATGGGCCTGTTGCGGTCACAC
GTTACGTGTCCGATGTGCCAGCACGCGAGCGTCACGTTCGACCCGTACAC
GTCTCTCTCTCTGCCCCTCCCTGTTGAGGACGCCATCATGGTGGAGGTTT
TGTTCCACCCGATGCCGTACGGTACCCGTCCGATGATGATGGCGTTCACG
CTGTCCAAGGAGAGCAAGGTCAGGGAGTTGAAGACCATGCTCTGCGAAAG
GATCAACAAGGAGCGGCAGACGTCTGTGGAGGTTTTGTTCCACCCGATGC
CGTACGGTACCCGTCCGATGATGATGGCGTTCACGCTGTCCAAGGAGAGC
AAGGTCAGGGAGTTGAAGACCATGCTCTGCGAAAGGATCAACAAGGAGCG
GCAGACGTCT
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