mRNA_H-paniculata_contig24358.6598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24358.6598.1
Unique NamemRNA_H-paniculata_contig24358.6598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig24358.6598.1 vs. uniprot
Match: A0A6H5L1L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.730e-26
Identity = 54/86 (62.79%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:  406 DQPTGDMPTAAEMERRDEDRDAQSSMENLLPREKIENGLRHARLLFATGWAGLASRVKELEETETVAKLKEGTVTIVDRSMDGLSK 663
            +QPTG++P+A EME R   +DA SS +NLLP +K+ENGLRHA+++FATGWA +A+  ++LE TET  K+KEGTV +VDRSMDGLSK
Sbjct:   68 EQPTGEVPSAEEMEDR---KDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSK 150
[Close]
BLAST of mRNA_H-paniculata_contig24358.6598.1 vs. uniprot
Match: D7G658_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G658_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.450e-21
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:  457 EDR-DAQSSMENLLPREKIENGLRHARLLFATGWAGLASRVKELEETETVAKLKEGTVTIVDRSMDGLSK 663
            EDR DA SS +NLLP +K+ENGLRHA+++FATGWA +A+  ++LE TET  K+KEGTV +VDRSMDGLSK
Sbjct:    2 EDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSK 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24358.6598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1L5_9PHAE1.730e-2662.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G658_ECTSI1.450e-2167.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24358contigH-paniculata_contig24358:1169..3209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005270.1
Exons2
Model size665
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24358.6598.1prot_H-paniculata_contig24358.6598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24358 1370..3209 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.4095697-UTR-H-paniculata_contig24358:1168..13691622929703.4095697-UTR-H-paniculata_contig24358:1168..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24358 1169..1369 +
1691480973.88224-UTR-H-paniculata_contig24358:1168..13691691480973.88224-UTR-H-paniculata_contig24358:1168..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24358 1169..1369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.421838-CDS-H-paniculata_contig24358:1369..16961622929703.421838-CDS-H-paniculata_contig24358:1369..1696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24358 1370..1696 +
1691480973.9029298-CDS-H-paniculata_contig24358:1369..16961691480973.9029298-CDS-H-paniculata_contig24358:1369..1696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24358 1370..1696 +
1622929703.4369416-CDS-H-paniculata_contig24358:3074..32091622929703.4369416-CDS-H-paniculata_contig24358:3074..3209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24358 3075..3209 +
1691480973.9227736-CDS-H-paniculata_contig24358:3074..32091691480973.9227736-CDS-H-paniculata_contig24358:3074..3209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24358 3075..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24358.6598.1

>prot_H-paniculata_contig24358.6598.1 ID=prot_H-paniculata_contig24358.6598.1|Name=mRNA_H-paniculata_contig24358.6598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MSNFEGTSSSSSDITIPSANGGDGIGGGDSQTAAVAAPAGIQEVPSSYTG
AAGGVSEEDMAAIMSVSVDQPTGDMPTAAEMERRDEDRDAQSSMENLLPR
EKIENGLRHARLLFATGWAGLASRVKELEETETVAKLKEGTVTIVDRSMD
GLSK
back to top

mRNA from alignment at H-paniculata_contig24358:1169..3209+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24358.6598.1 ID=mRNA_H-paniculata_contig24358.6598.1|Name=mRNA_H-paniculata_contig24358.6598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2041bp|location=Sequence derived from alignment at H-paniculata_contig24358:1169..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCATCTAGACCAATCGGATACGTAACAGGAGCTTATGGTGGTCATAT
CTCAGTGGATTATGATTACTGTAGGAAAATGTGTCAACGTTTGTTCGCCG
GCACGACGGAGTTTCATTGATTTTTTCTCGCGTACACACAACGTTGGCAT
CAACCTTCCTCTCTTCTATCTCTCCTGTTGTTCAAAGCGCTTGCACGAGT
CATGTCCAATTTTGAGGGAACGTCCTCATCTTCATCTGATATCACCATTC
CCAGTGCTAACGGTGGCGATGGTATTGGCGGCGGTGATAGTCAGACAGCA
GCAGTAGCAGCGCCAGCAGGAATTCAAGAAGTTCCCTCTTCGTACACTGG
GGCAGCAGGGGGCGTCTCCGAGGAGGACATGGCTGCCATTATGAGTGTTT
CGGTCGATCAACCGACGGGAGATATGCCCACGGCTGCGGAAATGGAGAGA
AGGGATGAAGATAGAGACGCGCAGTCGTCCATGGAGAACCTTCTTCCCAG
GGAGAAAATTGAGAACGGGCTTAGGCATGTGAGTTTCTCTCTCTCTCTCT
CTCTCTCTCTAAGGCGCCTTACTTTTCAGCAAGAGTATTTTCTCTAAAAC
ACCCTGTATTTAGTATATACTGACAGCCGTGTGTTGAGTAGCAAGTCTAC
CCGCCTGCGCTCCTCCTGTCTCTCTTCTCCCTGTGTATGGTGTCGCTACA
GGGACACCTCACGCAGCCCAATGTCATTATGGCCTCTACCTCTACGAGCG
GTACATCTTGTTGATTTTCATAGTGTATCTTAAGTTTTACTCTTCGATTC
CACGTAACCTTCCCTCTATCCGAGTGCAAAATGACACCACACTCTCGTAC
ATGAGAGAATCATCCCTATTGTTGTGTCAGTTGTTCATTTTTTGAAACCA
TATAAAACTACCTTTCGGCGTTTCACCTTCCACCGTGTGGTGTTATTCTC
GCTCCATCTCCACTTTTCATCGTGCTTCTCGGCATCGGCGAGAGCTTGCT
GAACGCATTTCGGTTCCGGTGGCGTTTACGCAAATGACTTATTTTATTTT
TCGTTCAACAGCAGAGATCGGACTCTGTACAGACTTGTACTTGTGCCTGT
ACTCTGTAAATTTGATTCCTTCGTGCTTACGTAGATGCCTTTGTGCACAC
GTCCTTGATGACAAACATTCTAGGTTGTTTATCACACAGCTGATTGCGTC
GTTTTGATATCACAACAACAGTGAATATCGATCCTCTGTGCGTTTGATGC
ATATACAACACGCTATGAACGCCACACAAATCCAACCTTGCCACAACTCT
GGAAGCTCTTACGTCTATCCTAGACCGAGAAGCCATGATGTCGCTTTCTT
TCGTCAACATGACGTGAAGAAGGGCATGTACCACTAAATTACTGGTGACC
TTTCTAGTGTAGCGAATGGTGACGAAGTCCACAGAGAATCGAGAATGAAA
GCTGGACAGTCAAATACTTATGAAAAGATTTTTAAGCCAGTTTGATGGCC
CCACTAAAATATAAATACTTTAAATATAACCCCCCCCCCCCCCCCCCCAT
GGTTAATTCTTTAATTCGAGTTGCGTTGTTGTCTATGTCGCGCGCGGGTG
AATCCTGCAAGTTTCACCACACTAACCCCCTAACCCTAGCCCTGTCGAGT
CGGCCGCCGGGGGCATTTGAAAACGCCCAAACGGTGTGCCGCTCTACGGC
GTGCTTGAAACCCTGGAGCCAAGTTCATGGAGGGTTGGGGCGGTACACGA
CAGTAGAACTAAGTCAAACATCTCATATTTTGCAACTGAAAGTTCACTGG
CGACAATGTTTCCTGGAGTATTTGTAATTGACTCTTTTTTCAGATTGCTA
CAATACGCTGTGGTGCGCACATTTCTAACTTTTCCTTGCATGTTTCGCTT
TTTTAGGCACGACTTCTATTTGCCACGGGCTGGGCAGGACTAGCCTCGAG
GGTGAAAGAGCTCGAGGAGACCGAAACTGTCGCGAAGCTTAAGGAGGGCA
CCGTTACCATCGTAGACCGCAGCATGGACGGTCTCAGCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24358:1169..3209+

>mRNA_H-paniculata_contig24358.6598.1 ID=mRNA_H-paniculata_contig24358.6598.1|Name=mRNA_H-paniculata_contig24358.6598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig24358:1169..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAATTTTGAGGGAACGTCCTCATCTTCATCTGATATCACCATTCC
CAGTGCTAACGGTGGCGATGGTATTGGCGGCGGTGATAGTCAGACAGCAG
CAGTAGCAGCGCCAGCAGGAATTCAAGAAGTTCCCTCTTCGTACACTGGG
GCAGCAGGGGGCGTCTCCGAGGAGGACATGGCTGCCATTATGAGTGTTTC
GGTCGATCAACCGACGGGAGATATGCCCACGGCTGCGGAAATGGAGAGAA
GGGATGAAGATAGAGACGCGCAGTCGTCCATGGAGAACCTTCTTCCCAGG
GAGAAAATTGAGAACGGGCTTAGGCATATGTCCAATTTTGAGGGAACGTC
CTCATCTTCATCTGATATCACCATTCCCAGTGCTAACGGTGGCGATGGTA
TTGGCGGCGGTGATAGTCAGACAGCAGCAGTAGCAGCGCCAGCAGGAATT
CAAGAAGTTCCCTCTTCGTACACTGGGGCAGCAGGGGGCGTCTCCGAGGA
GGACATGGCTGCCATTATGAGTGTTTCGGTCGATCAACCGACGGGAGATA
TGCCCACGGCTGCGGAAATGGAGAGAAGGGATGAAGATAGAGACGCGCAG
TCGTCCATGGAGAACCTTCTTCCCAGGGAGAAAATTGAGAACGGGCTTAG
GCATGCACGACTTCTATTTGCCACGGGCTGGGCAGGACTAGCCTCGAGGG
TGAAAGAGCTCGAGGAGACCGAAACTGTCGCGAAGCTTAAGGAGGGCACC
GTTACCATCGTAGACCGCAGCATGGACGGTCTCAGCAAGGCACGACTTCT
ATTTGCCACGGGCTGGGCAGGACTAGCCTCGAGGGTGAAAGAGCTCGAGG
AGACCGAAACTGTCGCGAAGCTTAAGGAGGGCACCGTTACCATCGTAGAC
CGCAGCATGGACGGTCTCAGCAAG
back to top