mRNA_H-paniculata_contig24307.6589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24307.6589.1
Unique NamemRNA_H-paniculata_contig24307.6589.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24307.6589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24307contigH-paniculata_contig24307:654..1622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.8939736-CDS-H-paniculata_contig24307:653..7161622929701.8939736-CDS-H-paniculata_contig24307:653..716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24307 654..716 +
1691480973.232395-CDS-H-paniculata_contig24307:653..7161691480973.232395-CDS-H-paniculata_contig24307:653..716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24307 654..716 +
1622929701.9083607-CDS-H-paniculata_contig24307:1424..16221622929701.9083607-CDS-H-paniculata_contig24307:1424..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24307 1425..1622 +
1691480973.2414248-CDS-H-paniculata_contig24307:1424..16221691480973.2414248-CDS-H-paniculata_contig24307:1424..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24307 1425..1622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24307.6589.1prot_H-paniculata_contig24307.6589.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24307 654..1622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24307.6589.1

>prot_H-paniculata_contig24307.6589.1 ID=prot_H-paniculata_contig24307.6589.1|Name=mRNA_H-paniculata_contig24307.6589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MQPVQRWTDFLLSQPWPPLLTENHDEDIHRGCTSRGVRHAAIGTASAGHK
GHVGVLEHRELSFNHHLRLHSDPSPEEGLDLSLEQLG
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mRNA from alignment at H-paniculata_contig24307:654..1622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24307.6589.1 ID=mRNA_H-paniculata_contig24307.6589.1|Name=mRNA_H-paniculata_contig24307.6589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=969bp|location=Sequence derived from alignment at H-paniculata_contig24307:654..1622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCCTGTTCAGAGATGGACTGATTTCCTGCTATCACAGCCCTGGCC
CCCACTGCTAACGGTTAGTTGCGAATGGTGTTTCAAACGTTTAGTTGATG
GTGTAGTGCTTGTATGTGTGTATGTTATCGACACAAAAAGCTGTTGCATG
TAAACCGCCCTGTGTTGCGATCCGATGCCCCTTTCGGAAAAACCTCTATT
TCTGTTTGCAGACAGAATTTACATGGTGCATAGTAACTCGCCGCGTCCCA
GCACCGGCTGATACCCGGCAGAAGTCCGTGTGCGTCACAGTGTGTTGGTG
ACCAAATGTTAACGAAGACGCCGTTAAACGAAAACCTCTGCAGCAGAATC
ATCGCGGACAACGCGCAGAACAGTGGCGCCACCCGCGGAAGATGGCAAGA
TGGCGAGCGCCAGGTACGAAACACTTGGTTGTGTACTTGCATTGCCAGAG
TGGGCAAAAGAGAGAATGTACGACGGATGGATATACATTGATGATGCCGT
TTTGGTTTTGGGAAAGTTATAGTATCGGTATTGGTGTTGATGTGACATTT
CGCCAAGGTGTGTGTGACTGGCTACTACTGTATGTACAAATATGTTCATG
GAAGTATGTATGTAATTAACAAACTATAGATTGAACAAAGACACCACCTA
CATACGTCTATATTGATGTGTCATTACCATCATTGATGTTCAAATATGTA
ACGTCTACTTGTCGTAGTTCTGCATGATGTACACAAGTCTAACAGTTCCG
CGTGTGACGTCTGTTCGCCAGGAAAATCATGACGAAGATATTCACCGCGG
ATGTACTTCAAGAGGGGTTCGACATGCAGCAATAGGTACTGCATCCGCCG
GGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGCTGTCCTTCAAT
CATCACCTACGGCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTTGATCT
TTCTCTCGAACAACTTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24307:654..1622+

>mRNA_H-paniculata_contig24307.6589.1 ID=mRNA_H-paniculata_contig24307.6589.1|Name=mRNA_H-paniculata_contig24307.6589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig24307:654..1622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCCTGTTCAGAGATGGACTGATTTCCTGCTATCACAGCCCTGGCC
CCCACTGCTAACGATGCAGCCTGTTCAGAGATGGACTGATTTCCTGCTAT
CACAGCCCTGGCCCCCACTGCTAACGGAAAATCATGACGAAGATATTCAC
CGCGGATGTACTTCAAGAGGGGTTCGACATGCAGCAATAGGTACTGCATC
CGCCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGCTGTCCT
TCAATCATCACCTACGGCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTT
GATCTTTCTCTCGAACAACTTGGAGAAAATCATGACGAAGATATTCACCG
CGGATGTACTTCAAGAGGGGTTCGACATGCAGCAATAGGTACTGCATCCG
CCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGCTGTCCTTC
AATCATCACCTACGGCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTTGA
TCTTTCTCTCGAACAACTTGGA
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