mRNA_H-paniculata_contig24254.6570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24254.6570.1
Unique NamemRNA_H-paniculata_contig24254.6570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24254.6570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24254contigH-paniculata_contig24254:2736..3559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size824
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24254.6570.1prot_H-paniculata_contig24254.6570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24254 3071..3526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.4407063-UTR-H-paniculata_contig24254:2735..30701622929699.4407063-UTR-H-paniculata_contig24254:2735..3070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24254 2736..3070 +
1691480972.146783-UTR-H-paniculata_contig24254:2735..30701691480972.146783-UTR-H-paniculata_contig24254:2735..3070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24254 2736..3070 +
1622929699.5107577-UTR-H-paniculata_contig24254:3526..35591622929699.5107577-UTR-H-paniculata_contig24254:3526..3559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24254 3527..3559 +
1691480972.165277-UTR-H-paniculata_contig24254:3526..35591691480972.165277-UTR-H-paniculata_contig24254:3526..3559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24254 3527..3559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.4633973-CDS-H-paniculata_contig24254:3070..35261622929699.4633973-CDS-H-paniculata_contig24254:3070..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24254 3071..3526 +
1691480972.1565726-CDS-H-paniculata_contig24254:3070..35261691480972.1565726-CDS-H-paniculata_contig24254:3070..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24254 3071..3526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24254.6570.1

>prot_H-paniculata_contig24254.6570.1 ID=prot_H-paniculata_contig24254.6570.1|Name=mRNA_H-paniculata_contig24254.6570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MTFCELVNGLTGQLTGDTRDWGSIFLLGLKFRLNLNGILPRMLLARCTFC
ANRGMKRFPNTLSRINSSEMDTNSPRNVPFASTIFEVLHSDSNVTSIPTR
KVIPNLEYYLLVPVDWHNLKKSGNTFTLRFFTPVQSSMPYFSAFLLPMHA
S*
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mRNA from alignment at H-paniculata_contig24254:2736..3559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24254.6570.1 ID=mRNA_H-paniculata_contig24254.6570.1|Name=mRNA_H-paniculata_contig24254.6570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=824bp|location=Sequence derived from alignment at H-paniculata_contig24254:2736..3559+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGTACAGGGACGGGGGGGCATGTTGGCAGTAGGGGTGATGATGCT
GGGGATGCTGCTGGTGTCGCGACCGTGGCCTTTGCCCTCGATGAATGTGG
TGACAGGGACATGGACCAACTCACCGCAATTGACTAGTCGGAGGTCGCAA
GCTCCCCTGCTCTTTAAGCAATAGGGGGGGGCGGGGGTTCACAGATGTTT
GCCGACCGTCCTAGCGGCTGCCTTACGCAAATGAATTTTTCGTCATTCTG
GGTGCAGTATTTATTTAGTCGGCTACACTCTTGTCCGCAGAGAGGGTAAC
TATTCGGTCATGATGGTGTCATATTTTAACCAACTATGACATTTTGTGAA
CTGGTTAACGGCTTAACTGGTCAATTAACAGGCGATACTCGGGATTGGGG
ATCAATTTTCTTGTTGGGATTGAAGTTCCGTTTGAATCTGAATGGAATAC
TTCCGAGAATGCTGCTAGCGAGATGCACCTTCTGTGCGAATCGAGGTATG
AAAAGGTTTCCAAATACATTATCCAGAATAAATAGCAGTGAGATGGACAC
CAACTCTCCCCGGAACGTGCCTTTCGCTAGCACCATTTTCGAAGTACTCC
ATTCAGATTCAAACGTAACTTCAATCCCAACAAGAAAGGTGATACCCAAT
CTCGAGTATTACCTGTTAGTTCCAGTTGACTGGCATAACTTGAAAAAGTC
CGGCAATACTTTCACTTTACGATTTTTTACCCCTGTACAGAGCTCTATGC
CATACTTCTCTGCGTTCCTGTTACCTATGCATGCGTCATAATCCAAAGCG
CTCCTGCTATATATGTCATACTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig24254:2736..3559+

>mRNA_H-paniculata_contig24254.6570.1 ID=mRNA_H-paniculata_contig24254.6570.1|Name=mRNA_H-paniculata_contig24254.6570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig24254:2736..3559+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTTTGTGAACTGGTTAACGGCTTAACTGGTCAATTAACAGGCGA
TACTCGGGATTGGGGATCAATTTTCTTGTTGGGATTGAAGTTCCGTTTGA
ATCTGAATGGAATACTTCCGAGAATGCTGCTAGCGAGATGCACCTTCTGT
GCGAATCGAGGTATGAAAAGGTTTCCAAATACATTATCCAGAATAAATAG
CAGTGAGATGGACACCAACTCTCCCCGGAACGTGCCTTTCGCTAGCACCA
TTTTCGAAGTACTCCATTCAGATTCAAACGTAACTTCAATCCCAACAAGA
AAGGTGATACCCAATCTCGAGTATTACCTGTTAGTTCCAGTTGACTGGCA
TAACTTGAAAAAGTCCGGCAATACTTTCACTTTACGATTTTTTACCCCTG
TACAGAGCTCTATGCCATACTTCTCTGCGTTCCTGTTACCTATGCATGCG
TCATAAATGACATTTTGTGAACTGGTTAACGGCTTAACTGGTCAATTAAC
AGGCGATACTCGGGATTGGGGATCAATTTTCTTGTTGGGATTGAAGTTCC
GTTTGAATCTGAATGGAATACTTCCGAGAATGCTGCTAGCGAGATGCACC
TTCTGTGCGAATCGAGGTATGAAAAGGTTTCCAAATACATTATCCAGAAT
AAATAGCAGTGAGATGGACACCAACTCTCCCCGGAACGTGCCTTTCGCTA
GCACCATTTTCGAAGTACTCCATTCAGATTCAAACGTAACTTCAATCCCA
ACAAGAAAGGTGATACCCAATCTCGAGTATTACCTGTTAGTTCCAGTTGA
CTGGCATAACTTGAAAAAGTCCGGCAATACTTTCACTTTACGATTTTTTA
CCCCTGTACAGAGCTCTATGCCATACTTCTCTGCGTTCCTGTTACCTATG
CATGCGTCATAA
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