mRNA_H-paniculata_contig2413.6532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2413.6532.1
Unique NamemRNA_H-paniculata_contig2413.6532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2413.6532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2413contigH-paniculata_contig2413:1853..6759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1246
Cds size912
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2413.6532.1prot_H-paniculata_contig2413.6532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2413 1853..6425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.3471956-CDS-H-paniculata_contig2413:1852..26251622929694.3471956-CDS-H-paniculata_contig2413:1852..2625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2413 1853..2625 -
1691480970.1587293-CDS-H-paniculata_contig2413:1852..26251691480970.1587293-CDS-H-paniculata_contig2413:1852..2625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2413 1853..2625 -
1622929694.3616474-CDS-H-paniculata_contig2413:6286..64251622929694.3616474-CDS-H-paniculata_contig2413:6286..6425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2413 6287..6425 -
1691480970.1704361-CDS-H-paniculata_contig2413:6286..64251691480970.1704361-CDS-H-paniculata_contig2413:6286..6425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2413 6287..6425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.3816233-UTR-H-paniculata_contig2413:6425..67591622929694.3816233-UTR-H-paniculata_contig2413:6425..6759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2413 6426..6759 -
1691480970.1837668-UTR-H-paniculata_contig2413:6425..67591691480970.1837668-UTR-H-paniculata_contig2413:6425..6759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2413 6426..6759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2413.6532.1

>prot_H-paniculata_contig2413.6532.1 ID=prot_H-paniculata_contig2413.6532.1|Name=mRNA_H-paniculata_contig2413.6532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
MDAREARDLLGLGDTPRRRRPSSTDHLNVYGAPSRADSADVAGGQGGSLD
VLWRDNNTTRALGWESAPSLTASPPQSFSSSRYQAETSVTRPPLNSYCAN
GTNGHVRDTGWRSSSSGSGAGLGGDGGGNALAVPGGNSLPPSSDPFWAPV
VPETETVAALPIQQQPNYNHNSNNNNSINTFSAHGHRQRGFVGSSGGRGR
GRNRSRTGTVIDRPALRGQEYRRERGNNNRRGRLGSSLSSLSSLSSGSRV
SESDVLAEQGQPSADGSLSRGRVRRSFLGIPWLPGGGGGGEEGRRRAANE
DQRE
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mRNA from alignment at H-paniculata_contig2413:1853..6759-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2413.6532.1 ID=mRNA_H-paniculata_contig2413.6532.1|Name=mRNA_H-paniculata_contig2413.6532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4907bp|location=Sequence derived from alignment at H-paniculata_contig2413:1853..6759- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGGGAGTTACCAGATAAAAATGGAAGTGACAGGGTACTATGCTATCAG
ACCTGCGACGCCGACAGTCTCACTATAATACTTATTTTCGATACTGTCAT
CCGCGCTACGAAGTTGGAGAAGACAATACAGGAGAGGAGAGGACGGGGAA
AGCGGCCTCCACCCGTAACTTTGATTCTTGCTTCTTTGCCTGCAAAGTGG
AGTAAAGCATAGCTTAGAAGGGTCAAACGCCGGGTTGGGGTTACCAACTA
CCAGTCACGAAAGGACGGCGCAAACAATTTTTGGGACCACTGATCGAATC
CGATCGAATCAATTCGACCATCATAATCGTCTTCATGGATGCGAGAGAAG
CGCGAGATTTGCTCGGCCTTGGCGATACCCCTCGACGCAGGAGACCCTCC
TCCACCGACCATCTCAATGTCTATGGTGCGCCATCGAGAGCGGACAGCGC
AGATGTAGCGGGCGGGCAAGGTGGTAAGAGGGAATGTTGCTGATATCGTA
GGATTGGGTTCATTGAATAGACTGAGTTATTTAATGTTTTATGCGCGCGT
GGTCGCGACGTTGCAGGGACGCGGACGGTTTCTGTGCGACAGATACGTGT
TTTGTGCGAAGTATTTACGACTAGCACAACGGATAAGCTTTGCCGCAGCC
CCATTGCTGAGTTCCCATGCATTTGATATTGCCGTAACCGTGCGCAGCAG
ATAGTAATTGCGGCAAAGAAGCTCGTGTCCTTTGCTAGAAGCTTTGCTCA
GAAGAATACAATCGCAAAATCAGCCACTGATGTAGGCTGGGGAAAGGTGT
CGGGTCAAGGCGGTGTCCGTTACAACCGTAGTTATGAACATCGTACACCA
GACAGACTAACAACTACAGTACCGTCATTCGGCGGAGGATCTGTGATAGA
TCTGGAGCCGTTTACAGAGACAAACAGCGCCTTCTCAACAAAAGAGCAAG
CAAATAGGGGCAGCGAGTTACAGCCAACAAAGGGTGCTGAAGTCAAGAAA
AAACACAAGACCTTTTTGTTTGTTCACGCATTCCCTATGTTCGTTTTGTC
GGGACCCCAACACGATATATCCCATCTCATCTTATCTTGAGTAAAATTTA
CGAGGTGTAAGTGACAACTGCAACCTGCAGGACTCAAAACTAACACCAGC
CAAGGTCAAGACGTGTAACACCCATGGACGCAGCAGTACCAAACCAAAAA
ATGACAGCTAGTACAGCCAGTCAGTTCTTCTTTTTTCTTTCTTCTTTTTG
GGAACCGTGAGTACTCACCCCTCGGGGCCTCCAACCATTCTGCGTCTGTT
CCTTGCGACATATAACAGGATTGAGTGAGACGTTCAGGCAGACCGGCCCT
TGTTGAGTTCAGAGTGGAGAGTTCAGAGCCGAGGTTTGCATTTTTTTCGC
CAAGCTTTTTGTTGAAAGCCGAAATTTAATATTCGATTTTCCCAAAGATC
CACGCACGAATGAGACACGCGGTCGTAAACCAACAAGCGACTAGCCCCAG
CAAAGTTGCACAACACAAAAACGAAAACATGAGCTACAGAGAGCTACAGA
AACATGTGCACTATTTGACTCTCACAATAGTCCTCACTCAGCTCCACACG
CCAATCTTCGCTCGACGGGAATCTGTTCTGTATTGGAGGAAGCGCGACCG
AATTTTCTTGTTCCTATCCTCATCATTTATAAACGAATTTACATTTTCGA
TCGAAACCAAATGCACGGTGCTCAGCTGATCAAGAGCTTCAGCTAGCGCA
AGGTTTTGTTGTACCGAGGGCAGTGGGCCTCTCACGCTCATGAGAGGGCA
AAATTTACATTCTTTTGTCACCCGGTTGCAACTCATGACCTTTCAGCGGC
TACTTCGTTCCTGTTGAAGTATCATACGATTTGACACAATCTCCACAGTA
ATTTCAAGGGAAGAGGGCGTTTATCACGATGGGGTCGTCCCGGGTGCGTG
AGGTCACGGGACCCAGCGTGGTCCTATCTCAACTTATGGAAACCTGTCAT
TAATCAAGTAAAAAACATTCCATTTTCCAAGATCAAAATACGCAATTGAA
TATCCTCGGGCGGTCCAGAGGCTAAAATTGAAGTAAATTTCGGTGTGGTG
ATTGAATGTCACAGAAGGCAAGGCTTGAACCAATCCCTCCCGACCCCCTC
CCCGGGAAATGACACGGAGCGACGTCGATGAGCTCGAGAGAAGCAAACTT
CGCGAGCAGTGATGTACAGCGCAAAATATGGTTATCTGTCCACCTGCCTA
CCCCGCAGAGTAATAAATAACTCTGTTCTATTAAAGGAAATGTAGACATG
TTTGGGCGAATGTCTGAACGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAG
CCTTCCGGGGGTTAAAAAAAAAAAATCTGTCCACCTCCTCGAAGAAGTTT
GGTGACATTCGATCCATTCTAGTGCACAAACGGCTGATGTTTGTCTCATG
AAAAAAGTTGCCAACAAATATGCCTCAATTATAGAAATCCCAACGTCATT
TTTCCAGTCACTTGTTCAGCAGCGACAGTCCCGGATATCTCATGCACGCT
GTCTCGATGATGACAAAACTGTACAGGCTTATAAATTGAAACTTTTTTGG
CGGGAGGGGGGGGGAGTTGTCCCTTTTCGGCTTTTGTTCCTGCTCGGAAA
CAAAATGTACTAGTTGGAGCGACAGCTATCCTTTGCCCGTGCACTTGGTG
CGTGGCGTCAACCTGCAGACTCGCTGCGCTCACAATTGCAGGCTCGCGTA
ACGAACAATCACTGTTCGCTGCAATCGCAGTGGCTCGGTACGCTTGTACA
AAAGATTTCATCCACCGGACGAACAGGAATACGTGCAAATGATTCTCACA
AAAAACTGAAAGTATTCGCATGAGTTTCAGAAATAACCTCGTGTGCTCTA
TGTGCCCCGGACCATCCGCGACTGCTAATAGTCGTAAATCGAATGAACAG
GGGTGGGTACTTTATTCTATGTGTTCGCTCATTCTGAAACCCAAGCGAAT
GCTTTCATTTTTTTGTAAAAACCATTTGCAAGTGTTCGTATTTGTCGGGC
GGTTGAATCATTTCTTTTTCAAGAGTTACTTGAGTACAGAGTTGAAAAAC
TGTTTCAAACCGAGACGATGACTTCTACCCCCACCAAACTCCAACTTTGC
GTATTAAATAATGACAGGAAGGATATATATATACGTGAGGGAGGAGGCAT
AGCTTACGACCACCATCTCTCATCTCTATTTGTTTGGCAGGCGAATATCT
GTCGCGCACCGTCAATATCGCTCACGTCCAGTAGTTGGTTGGTTGTTTTT
ATCACCACAGAAAAAATGCCACCCAGCAGCCGCATATGCCCTATCCAAAA
ACCGAAGCATTACACGTGAAGCTAGCTCGATGTGTGCAGGGAATCAGCAA
GTACATGCCTGCTTTTCTTCCGCCGCAAAGAACGTATTTTTGTTGTTGAT
ATCCGTAACTTGTGCTCACTGTTTCCAAAGGTCCCATTCTCCCCACTATC
GGAGCGGAAAAAAAAAAAAAAACTTGAAAAAATTATGTATATAGTACTCT
GACTTGAATCTTCATTAAACGAAGTGTTATAAGTTAACAAAAATTGTGAT
GTTTCACAAGTTTTCAATTTTCACACGAGGGTTCGATTTTTGCCGTACAT
TGCTCTCTCATAACTTTCAGGCAGCGCAAATCCGAAACTATCGCATTCTG
TACGCTGGATTGCTCGCCTCGCTGGTCAATGAAAAGAAGATCGTACGTGC
TTGCTGGTCCGAGCGGAGCTGCGAAAATTTGATGGGCACACATACACACA
CACAAACATTTTTCAAGTCCGAGCAATCGCCAGTGTAATCACAATTTCCC
CGTTGCCCTGTGAATACAGGACGCCAGCAACTACCCCTCGTCGTATCCTG
CCATCTCCATGTAAAGTCCCCCACGTGCGAGGGTAGGTCGCACACGAAAG
CTGGTGGTACGGCAATGTGGCTGCAACGTGCATTGAAGCACCCATCTCTG
GCTTGTCATAAATCATCGCCTGTGTTTGTGTGTGAGAGAGAGTGTGTGTT
TTTGTTCAGGTCATGATGGACAGCAATTATGAAATACTTTCTTCTTCCCC
CCCCCGTCACGAAAATATATCCACCAAAACACAGGCTCCCTCGACGTCCT
ATGGAGAGACAACAACACCACGCGGGCTCTAGGTTGGGAGTCGGCTCCAT
CTCTGACGGCGTCACCCCCGCAATCGTTCTCGTCCTCTCGCTACCAAGCC
GAAACCTCCGTGACTCGGCCTCCGTTGAACTCTTACTGCGCCAATGGTAC
CAACGGTCACGTTAGAGACACGGGATGGCGCAGCAGCAGCAGCGGCAGCG
GCGCAGGACTCGGCGGCGACGGCGGCGGCAATGCACTGGCTGTTCCCGGA
GGGAACTCGCTCCCCCCGAGCAGTGATCCTTTCTGGGCACCGGTTGTCCC
GGAAACCGAAACGGTCGCTGCGCTGCCAATTCAACAGCAGCCCAACTACA
ACCATAACAGCAACAACAACAACAGTATCAACACCTTTTCTGCGCACGGT
CATCGACAAAGAGGTTTTGTCGGCAGTAGCGGTGGTCGGGGAAGAGGAAG
AAATAGAAGTAGAACAGGGACGGTGATCGATAGACCGGCCTTGCGCGGGC
AAGAGTATCGCCGGGAGAGAGGGAACAACAATCGCCGGGGCCGCCTCGGA
TCCTCGCTATCCTCATTGTCTTCTCTAAGCAGTGGCAGTAGGGTCAGCGA
GTCGGACGTATTGGCGGAACAGGGACAGCCATCGGCGGATGGGAGTCTCA
GCAGGGGTAGGGTGCGTCGTTCTTTCTTGGGTATTCCTTGGCTGCCTGGC
GGCGGCGGCGGCGGCGAGGAGGGGCGGCGGAGGGCGGCGAACGAGGATCA
GCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2413:1853..6759-

>mRNA_H-paniculata_contig2413.6532.1 ID=mRNA_H-paniculata_contig2413.6532.1|Name=mRNA_H-paniculata_contig2413.6532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig2413:1853..6759- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCGAGAGAAGCGCGAGATTTGCTCGGCCTTGGCGATACCCCTCG
ACGCAGGAGACCCTCCTCCACCGACCATCTCAATGTCTATGGTGCGCCAT
CGAGAGCGGACAGCGCAGATGTAGCGGGCGGGCAAGGTGATGGATGCGAG
AGAAGCGCGAGATTTGCTCGGCCTTGGCGATACCCCTCGACGCAGGAGAC
CCTCCTCCACCGACCATCTCAATGTCTATGGTGCGCCATCGAGAGCGGAC
AGCGCAGATGTAGCGGGCGGGCAAGGTGGCTCCCTCGACGTCCTATGGAG
AGACAACAACACCACGCGGGCTCTAGGTTGGGAGTCGGCTCCATCTCTGA
CGGCGTCACCCCCGCAATCGTTCTCGTCCTCTCGCTACCAAGCCGAAACC
TCCGTGACTCGGCCTCCGTTGAACTCTTACTGCGCCAATGGTACCAACGG
TCACGTTAGAGACACGGGATGGCGCAGCAGCAGCAGCGGCAGCGGCGCAG
GACTCGGCGGCGACGGCGGCGGCAATGCACTGGCTGTTCCCGGAGGGAAC
TCGCTCCCCCCGAGCAGTGATCCTTTCTGGGCACCGGTTGTCCCGGAAAC
CGAAACGGTCGCTGCGCTGCCAATTCAACAGCAGCCCAACTACAACCATA
ACAGCAACAACAACAACAGTATCAACACCTTTTCTGCGCACGGTCATCGA
CAAAGAGGTTTTGTCGGCAGTAGCGGTGGTCGGGGAAGAGGAAGAAATAG
AAGTAGAACAGGGACGGTGATCGATAGACCGGCCTTGCGCGGGCAAGAGT
ATCGCCGGGAGAGAGGGAACAACAATCGCCGGGGCCGCCTCGGATCCTCG
CTATCCTCATTGTCTTCTCTAAGCAGTGGCAGTAGGGTCAGCGAGTCGGA
CGTATTGGCGGAACAGGGACAGCCATCGGCGGATGGGAGTCTCAGCAGGG
GTAGGGTGCGTCGTTCTTTCTTGGGTATTCCTTGGCTGCCTGGCGGCGGC
GGCGGCGGCGAGGAGGGGCGGCGGAGGGCGGCGAACGAGGATCAGCGAGA
GGCTCCCTCGACGTCCTATGGAGAGACAACAACACCACGCGGGCTCTAGG
TTGGGAGTCGGCTCCATCTCTGACGGCGTCACCCCCGCAATCGTTCTCGT
CCTCTCGCTACCAAGCCGAAACCTCCGTGACTCGGCCTCCGTTGAACTCT
TACTGCGCCAATGGTACCAACGGTCACGTTAGAGACACGGGATGGCGCAG
CAGCAGCAGCGGCAGCGGCGCAGGACTCGGCGGCGACGGCGGCGGCAATG
CACTGGCTGTTCCCGGAGGGAACTCGCTCCCCCCGAGCAGTGATCCTTTC
TGGGCACCGGTTGTCCCGGAAACCGAAACGGTCGCTGCGCTGCCAATTCA
ACAGCAGCCCAACTACAACCATAACAGCAACAACAACAACAGTATCAACA
CCTTTTCTGCGCACGGTCATCGACAAAGAGGTTTTGTCGGCAGTAGCGGT
GGTCGGGGAAGAGGAAGAAATAGAAGTAGAACAGGGACGGTGATCGATAG
ACCGGCCTTGCGCGGGCAAGAGTATCGCCGGGAGAGAGGGAACAACAATC
GCCGGGGCCGCCTCGGATCCTCGCTATCCTCATTGTCTTCTCTAAGCAGT
GGCAGTAGGGTCAGCGAGTCGGACGTATTGGCGGAACAGGGACAGCCATC
GGCGGATGGGAGTCTCAGCAGGGGTAGGGTGCGTCGTTCTTTCTTGGGTA
TTCCTTGGCTGCCTGGCGGCGGCGGCGGCGGCGAGGAGGGGCGGCGGAGG
GCGGCGAACGAGGATCAGCGAGAG
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