mRNA_H-paniculata_contig24106.6527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24106.6527.1
Unique NamemRNA_H-paniculata_contig24106.6527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24106.6527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24106contigH-paniculata_contig24106:2332..2937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size187
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24106.6527.1prot_H-paniculata_contig24106.6527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24106 2339..2937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.9680188-UTR-H-paniculata_contig24106:2331..23381622929693.9680188-UTR-H-paniculata_contig24106:2331..2338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24106 2332..2338 +
1691480969.9949372-UTR-H-paniculata_contig24106:2331..23381691480969.9949372-UTR-H-paniculata_contig24106:2331..2338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24106 2332..2338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.9830658-CDS-H-paniculata_contig24106:2338..24101622929693.9830658-CDS-H-paniculata_contig24106:2338..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24106 2339..2410 +
1691480970.0043423-CDS-H-paniculata_contig24106:2338..24101691480970.0043423-CDS-H-paniculata_contig24106:2338..2410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24106 2339..2410 +
1622929694.0022252-CDS-H-paniculata_contig24106:2829..29371622929694.0022252-CDS-H-paniculata_contig24106:2829..2937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24106 2830..2937 +
1691480970.0128434-CDS-H-paniculata_contig24106:2829..29371691480970.0128434-CDS-H-paniculata_contig24106:2829..2937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24106 2830..2937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24106.6527.1

>prot_H-paniculata_contig24106.6527.1 ID=prot_H-paniculata_contig24106.6527.1|Name=mRNA_H-paniculata_contig24106.6527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MSAGTQMPYNCINSASDRHVFNFMGISLTEEFPLFGPDKKKYKPTTLITS
TKKDAVRTQ*
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mRNA from alignment at H-paniculata_contig24106:2332..2937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24106.6527.1 ID=mRNA_H-paniculata_contig24106.6527.1|Name=mRNA_H-paniculata_contig24106.6527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig24106:2332..2937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCATATGTCTGCCGGTACGCAAATGCCGTACAATTGCATCAACAGCG
CGTCGGACAGGCATGTTTTCAATTTTATGGTAAGCGCAACGTTAGCAGTA
CATACCACCTGGTTGGATCACAGTTTATGATTTTGGGAACGTACCGTACG
TAATGATACTTTTTGTTTTTCTCTGCGATTTGAATCGATCAGAAGTCACG
CAACCCTCCTCGATTTTTGTTTTGCTAGCGTTTAAGATGCATAACCTTTG
GTCGTCGCCTCCAGCTTCGCAAGCATGTTGTGGTTGTTTTTCGATTCAAG
TCAATGACATACAGACGCTAAGGCTCGGCAGCTGTGATCAATCTGTCAAA
CTTCTGCGGCAGCCGCTATGTTCCTGCACCATTACCGATTTACCGGTTTC
GGACAAGACTGATGTGCTCTCCGCTAGTTCCCACGGTGTGCTCATCTTCC
AGTTGCTCGTTCTATTTTTTATGCGCTGTGCTTGTTTCGGCGGTCAAGGG
CATTAGCCTCACTGAGGAATTTCCGCTTTTTGGGCCAGACAAGAAAAAAT
ACAAGCCGACGACGCTCATAACTTCAACCAAAAAGGACGCGGTGAGAACA
CAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24106:2332..2937+

>mRNA_H-paniculata_contig24106.6527.1 ID=mRNA_H-paniculata_contig24106.6527.1|Name=mRNA_H-paniculata_contig24106.6527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig24106:2332..2937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGCCGGTACGCAAATGCCGTACAATTGCATCAACAGCGCGTCGGA
CAGGCATGTTTTCAATTTTATGATGTCTGCCGGTACGCAAATGCCGTACA
ATTGCATCAACAGCGCGTCGGACAGGCATGTTTTCAATTTTATGGGCATT
AGCCTCACTGAGGAATTTCCGCTTTTTGGGCCAGACAAGAAAAAATACAA
GCCGACGACGCTCATAACTTCAACCAAAAAGGACGCGGTGAGAACACAGT
AGGGCATTAGCCTCACTGAGGAATTTCCGCTTTTTGGGCCAGACAAGAAA
AAATACAAGCCGACGACGCTCATAACTTCAACCAAAAAGGACGCGGTGAG
AACACAGTAG
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