mRNA_H-paniculata_contig24000.6497.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24000.6497.1
Unique NamemRNA_H-paniculata_contig24000.6497.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24000.6497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24000contigH-paniculata_contig24000:2572..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24000.6497.1prot_H-paniculata_contig24000.6497.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24000 2572..2906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.2202065-CDS-H-paniculata_contig24000:2571..27251622929689.2202065-CDS-H-paniculata_contig24000:2571..2725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24000 2572..2725 +
1691480968.1885154-CDS-H-paniculata_contig24000:2571..27251691480968.1885154-CDS-H-paniculata_contig24000:2571..2725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24000 2572..2725 +
1622929689.2316263-CDS-H-paniculata_contig24000:2838..29061622929689.2316263-CDS-H-paniculata_contig24000:2838..2906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24000 2839..2906 +
1691480968.1996193-CDS-H-paniculata_contig24000:2838..29061691480968.1996193-CDS-H-paniculata_contig24000:2838..2906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24000 2839..2906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.2463684-UTR-H-paniculata_contig24000:2906..30291622929689.2463684-UTR-H-paniculata_contig24000:2906..3029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24000 2907..3029 +
1691480968.212171-UTR-H-paniculata_contig24000:2906..30291691480968.212171-UTR-H-paniculata_contig24000:2906..3029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24000 2907..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24000.6497.1

>prot_H-paniculata_contig24000.6497.1 ID=prot_H-paniculata_contig24000.6497.1|Name=mRNA_H-paniculata_contig24000.6497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig24000:2572..3029+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24000.6497.1 ID=mRNA_H-paniculata_contig24000.6497.1|Name=mRNA_H-paniculata_contig24000.6497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig24000:2572..3029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24000:2572..3029+

>mRNA_H-paniculata_contig24000.6497.1 ID=mRNA_H-paniculata_contig24000.6497.1|Name=mRNA_H-paniculata_contig24000.6497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig24000:2572..3029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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