mRNA_H-paniculata_contig239.6460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig239.6460.1
Unique NamemRNA_H-paniculata_contig239.6460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig239.6460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig239contigH-paniculata_contig239:13650..14363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size714
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.461118-CDS-H-paniculata_contig239:13649..143631622929682.461118-CDS-H-paniculata_contig239:13649..14363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig239 13650..14363 +
1691480965.63637-CDS-H-paniculata_contig239:13649..143631691480965.63637-CDS-H-paniculata_contig239:13649..14363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig239 13650..14363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig239.6460.1prot_H-paniculata_contig239.6460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig239 13650..14363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig239.6460.1

>prot_H-paniculata_contig239.6460.1 ID=prot_H-paniculata_contig239.6460.1|Name=mRNA_H-paniculata_contig239.6460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MLYKTTVPTMAYGITWVFYPNSNTAPHSCGTIWHHPAAAFTENMQRAISI
TFPVYGNTSSLWRGDCSVTLLPPYAEKNKKSTHKSIRCCEVMIRKATQRN
IATAFCCRWTCCSPQLPRALRRVQYKQMRHKERQRAHWGRQTQTTYRTAS
TQPRHGQHPPTQQRFRFDDIRDKKATENPAAYSGQGVHTMAVSLSSTSIQ
HYKQVYLLYYTKPLHTLRSPETQTRQTPPPPCMTQRS*
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mRNA from alignment at H-paniculata_contig239:13650..14363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig239.6460.1 ID=mRNA_H-paniculata_contig239.6460.1|Name=mRNA_H-paniculata_contig239.6460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=714bp|location=Sequence derived from alignment at H-paniculata_contig239:13650..14363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTACAAAACTACCGTACCTACCATGGCCTACGGCATAACATGGGT
CTTCTACCCTAACTCCAATACCGCGCCGCACTCATGTGGTACAATATGGC
ATCATCCTGCTGCTGCGTTTACAGAGAATATGCAGAGAGCCATATCTATT
ACTTTCCCAGTATATGGGAATACAAGTAGTCTATGGCGCGGTGATTGCAG
CGTCACGCTGCTGCCACCATACGCCGAAAAAAATAAAAAATCTACTCACA
AATCAATCCGTTGTTGCGAGGTGATGATACGAAAAGCAACACAGCGTAAC
ATCGCAACTGCCTTTTGCTGCCGATGGACATGTTGTTCTCCGCAACTCCC
GCGTGCTCTCCGACGTGTTCAATACAAGCAAATGCGTCACAAGGAGCGAC
AGCGAGCACACTGGGGTCGCCAAACACAAACAACATACAGAACAGCATCA
ACCCAGCCGAGACATGGGCAGCACCCCCCGACCCAACAAAGGTTTCGCTT
CGACGATATTCGGGACAAGAAAGCGACGGAAAATCCTGCCGCATACAGTG
GGCAGGGAGTACACACGATGGCGGTCAGCCTTTCATCAACATCTATTCAA
CACTACAAGCAGGTGTACCTGCTGTACTACACCAAACCACTGCACACGCT
ACGATCACCTGAAACACAAACAAGACAAACACCCCCCCCCCCATGCATGA
CCCAGCGATCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig239:13650..14363+

>mRNA_H-paniculata_contig239.6460.1 ID=mRNA_H-paniculata_contig239.6460.1|Name=mRNA_H-paniculata_contig239.6460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig239:13650..14363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTACAAAACTACCGTACCTACCATGGCCTACGGCATAACATGGGT
CTTCTACCCTAACTCCAATACCGCGCCGCACTCATGTGGTACAATATGGC
ATCATCCTGCTGCTGCGTTTACAGAGAATATGCAGAGAGCCATATCTATT
ACTTTCCCAGTATATGGGAATACAAGTAGTCTATGGCGCGGTGATTGCAG
CGTCACGCTGCTGCCACCATACGCCGAAAAAAATAAAAAATCTACTCACA
AATCAATCCGTTGTTGCGAGGTGATGATACGAAAAGCAACACAGCGTAAC
ATCGCAACTGCCTTTTGCTGCCGATGGACATGTTGTTCTCCGCAACTCCC
GCGTGCTCTCCGACGTGTTCAATACAAGCAAATGCGTCACAAGGAGCGAC
AGCGAGCACACTGGGGTCGCCAAACACAAACAACATACAGAACAGCATCA
ACCCAGCCGAGACATGGGCAGCACCCCCCGACCCAACAAAGGTTTCGCTT
CGACGATATTCGGGACAAGAAAGCGACGGAAAATCCTGCCGCATACAGTG
GGCAGGGAGTACACACGATGGCGGTCAGCCTTTCATCAACATCTATTCAA
CACTACAAGCAGGTGTACCTGCTGTACTACACCAAACCACTGCACACGCT
ACGATCACCTGAAACACAAACAAGACAAACACCCCCCCCCCCATGCATGA
CCCAGCGATCTTAAATGTTGTACAAAACTACCGTACCTACCATGGCCTAC
GGCATAACATGGGTCTTCTACCCTAACTCCAATACCGCGCCGCACTCATG
TGGTACAATATGGCATCATCCTGCTGCTGCGTTTACAGAGAATATGCAGA
GAGCCATATCTATTACTTTCCCAGTATATGGGAATACAAGTAGTCTATGG
CGCGGTGATTGCAGCGTCACGCTGCTGCCACCATACGCCGAAAAAAATAA
AAAATCTACTCACAAATCAATCCGTTGTTGCGAGGTGATGATACGAAAAG
CAACACAGCGTAACATCGCAACTGCCTTTTGCTGCCGATGGACATGTTGT
TCTCCGCAACTCCCGCGTGCTCTCCGACGTGTTCAATACAAGCAAATGCG
TCACAAGGAGCGACAGCGAGCACACTGGGGTCGCCAAACACAAACAACAT
ACAGAACAGCATCAACCCAGCCGAGACATGGGCAGCACCCCCCGACCCAA
CAAAGGTTTCGCTTCGACGATATTCGGGACAAGAAAGCGACGGAAAATCC
TGCCGCATACAGTGGGCAGGGAGTACACACGATGGCGGTCAGCCTTTCAT
CAACATCTATTCAACACTACAAGCAGGTGTACCTGCTGTACTACACCAAA
CCACTGCACACGCTACGATCACCTGAAACACAAACAAGACAAACACCCCC
CCCCCCATGCATGACCCAGCGATCTTAA
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