mRNA_H-paniculata_contig23785.6429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23785.6429.1
Unique NamemRNA_H-paniculata_contig23785.6429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23785.6429.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.430e-10
Identity = 100/424 (23.58%), Postives = 166/424 (39.15%), Query Frame = 2 
Query:  494 RLTVRDWLK-----------------RIGFHYQQGKAEYA-VTDTRKARIRECLIDFSEAFLKQKARTHVIIYINKCYIHVLHRSKFSFYHQGESR-----SANAAGKEKRIIINHAIIKDG----LDRS*LRPTQGMA*NFQFPKGDTEQGISQRKMTVVVVATAVQGEGGRR------------ELGKVPGMRTR-GRVWLLLRE*TWRR*RSRTCYLKQAAWRTATTTRS*MRTCSCCG*RDAWCQHFKSFTLASR*YRSSTTRHTTIEWRKGGKALFR*SRHIVPTCYVSWALLPSAYLW*IV**RHTRCA--TTDGERAAGNVSSAEALTVGRSAEWAETFFASGDLGYLIFIPPSYPALQPVELFWAHSKNYVASVFREKRTIEEMWRQLRERR*G--GDQPHLG--GIWKVSQIAKI 1627
            R TVR+W+K                 RIG+  ++G+ +   + D RKARIR  L++ S A  +++    VI+Y+++ + H LH S +S++   +           +GK  R+I+ HAI K G    +D +     +G        KG    G    + T  ++  A +  G               E    P  + + G   ++L              L  A++         +   +  G   A  + +K              R  T+E      A  R  ++       +    P A         +++C    +  E A    +  +     +  E  ETF  +G    LI+ PP  P+ QP+ELFW H K YV+  F+ KRT+ E+W Q+R+   G  GD    G  G WK +  +K+
Sbjct:  196 RRTVREWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWFKPKDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMIL-------------VLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKC-------------RKITVEREVTSSAGVRSKKYTFQV--PATGTFPQA---------NSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFM-NGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRK---GWYGDPTWEGQKGGWKPADCSKL 578
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BLAST of mRNA_H-paniculata_contig23785.6429.1 vs. uniprot
Match: A0A7S1FYW6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYW6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.830e-7
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 2 
Query:  515 LKRIGFHYQQGKAEYAVTDTRKAR-IRECLIDFSEAFLKQKARTHVIIYINKCYIHVLHRSKFSFYHQGESRSANAAGKEKRIIINHAIIKDG 790
            +K++G  Y++ + +  +    + + I   L  FSEA   +K    + +Y+++ YIH  H + + +Y + E RS  +A K +R+II HAI KDG
Sbjct:    1 MKQLGLSYKRARLKARILSNERIKYICSYLCHFSEALDFEKKGGRICVYMDESYIHTTHSTSYGYYFK-EQRSGQSASKGRRLIIVHAICKDG 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23785.6429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ25_ECTSI3.430e-1023.58Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S1FYW6_9STRA5.830e-732.26Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23785contigH-paniculata_contig23785:403..3042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2114
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23785.6429.1prot_H-paniculata_contig23785.6429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23785 1876..2260 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.973936-UTR-H-paniculata_contig23785:402..5521622929677.973936-UTR-H-paniculata_contig23785:402..552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 403..552 +
1691480963.383591-UTR-H-paniculata_contig23785:402..5521691480963.383591-UTR-H-paniculata_contig23785:402..552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 403..552 +
1622929677.998292-UTR-H-paniculata_contig23785:1050..18751622929677.998292-UTR-H-paniculata_contig23785:1050..1875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 1051..1875 +
1691480963.397643-UTR-H-paniculata_contig23785:1050..18751691480963.397643-UTR-H-paniculata_contig23785:1050..1875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 1051..1875 +
1622929678.051678-UTR-H-paniculata_contig23785:2260..30421622929678.051678-UTR-H-paniculata_contig23785:2260..3042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 2261..3042 +
1691480963.4254823-UTR-H-paniculata_contig23785:2260..30421691480963.4254823-UTR-H-paniculata_contig23785:2260..3042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23785 2261..3042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.011595-CDS-H-paniculata_contig23785:1875..22251622929678.011595-CDS-H-paniculata_contig23785:1875..2225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23785 1876..2225 +
1691480963.4081504-CDS-H-paniculata_contig23785:1875..22251691480963.4081504-CDS-H-paniculata_contig23785:1875..2225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23785 1876..2225 +
1622929678.0341845-CDS-H-paniculata_contig23785:2253..22601622929678.0341845-CDS-H-paniculata_contig23785:2253..2260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23785 2254..2260 +
1691480963.4166608-CDS-H-paniculata_contig23785:2253..22601691480963.4166608-CDS-H-paniculata_contig23785:2253..2260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23785 2254..2260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23785.6429.1

>prot_H-paniculata_contig23785.6429.1 ID=prot_H-paniculata_contig23785.6429.1|Name=mRNA_H-paniculata_contig23785.6429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MAAASRINMETMKIADMLFEAGGMENSDYHKIMNADMFMLWLERCLVPTF
QELYPGKQMIPILDYAAYHHRMEEGWKSPLQVIKTHRADVLRQLGVASIS
VPVVDSLMKAYAVRDDGR*
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mRNA from alignment at H-paniculata_contig23785:403..3042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23785.6429.1 ID=mRNA_H-paniculata_contig23785.6429.1|Name=mRNA_H-paniculata_contig23785.6429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2640bp|location=Sequence derived from alignment at H-paniculata_contig23785:403..3042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTGTCGAGCTGGTGCGGCGGCGAAAAGGTGCATGAAGCGAAAAGCGC
TGAAAAAAGGAAGAGGGAGGTCGCGGAGGCAGCAAAAACAGAGTAAAAAC
GCCGGAAGAAGCTAATCCCACATAAGGGACAGAAGATAAACCCCGGGCAG
GTGACGTTCGTTGCCTGGACAGTCACACAGCGAAGCGGTACCTAGAAAGC
TGCTCGGTGCACTGCATAAACCAAACGTTCAGAGAAGAAGACAGTCCTAA
GCTCTTTGCTTTTTTTTTCTTGTCCTCGAGAGTCGACAGAAAAATAGACT
TAAATGATGTCATGCTAGCAGCGTTGTGATGATGTTTCAATGCTCACTTA
ATATGACATCATTCCAGAGACGTTTGATTTGCGTCTTTTTTCGGGTCATT
ATTCTGAAATGTAATAGTACTAAGCTGAAAACCCGAAATAAACCCGGAGA
TGGTTCCTCTTCGACCGAGACGTACTGGGTAAATAACCGTCATTCAAATA
ATAGATCAGCCTGTTTGCGTGTCAGACGTAAACCCTGACCCCCCAATGAT
CATACTGCTAAATACCACGTCCATATGCCGATCACCCCCGCCAACTCCTC
AGCCCCTCTCCCCCCCCCGCCTCCACCCGCAACTCCTTCATAATACAGGC
GCAACTAGTACTGATACACTACTACACGCACTTCCTCAAGGGTTTCGGAG
AGGGTTGTGTCCGCGCAGCGATATATGAGTCGCTGGGCGTAGCTATACGT
ACGGTGGAAATAGTCTTGTCAAACTACAAACGTAGCGGCGCTTTCGAGCT
TAGCGACGGCCGCGCTGGTTCGGACAACACATTGGATTTCGAGTTGAGGA
CGCGCATTGATAGTAGCGTGGACGAGCTGAACGGCGTAGGACGGCCGGTG
ACCTCGAATGTTGTTCAATAGTACCTGACTAGCAAACCGGCCGCAGACAA
CCCGTTCGATGCTAGGAGGGAGCCGCTCGTGGTACCCCGGTCGACTGACT
GTACGGGACTGGCTGAAGAGGATTGGCTTCCACTACCAACAGGGCAAGGC
AGAGTATGCCGTGACGGACACGCGGAAAGCGCGCATACGTGAGTGTCTCA
TCGACTTTTCCGAGGCATTCCTGAAGCAGAAGGCAAGGACGCACGTCATC
ATCTACATAAACAAATGCTATATTCACGTTTTACACAGGAGCAAGTTTTC
GTTTTACCACCAAGGTGAGAGCCGGTCGGCCAACGCTGCCGGCAAGGAAA
AGCGCATCATCATCAACCATGCTATCATAAAAGACGGACTGGACCGCTCG
TGACTAAGGCCGACACAAGGGATGGCGTAAAATTTCCAATTCCCGAAGGG
TGATACAGAGCAGGGGATAAGCCAGAGGAAGATGACGGTGGTTGTTGTGG
CGACAGCAGTACAGGGTGAGGGAGGAAGAAGAGAGCTGGGGAAGGTGCCC
GGAATGCGAACAAGGGGAAGGGTATGGCTGCTGCTTCGCGAATAAACATG
GAGACGATGAAGATCGCGGACATGTTATTTGAAGCAGGCGGCATGGAGAA
CAGCGACTACCACAAGATCATGAATGCGGACATGTTCATGTTGTGGCTAG
AGAGATGCCTGGTGCCAACATTTCAAGAGCTTTACCCTGGCAAGCAGATG
ATACCGATCCTCGACTACGCGGCATACCACCATAGAATGGAGGAAGGGTG
GAAAAGCCCTCTTCAGGTGATCAAGACACATCGTGCCGACGTGCTACGTC
AGTTGGGCGTTGCTTCCATCAGCGTACCTGTGGTAGATAGTCTAATGAAG
GCATACGCGGTGCGCGACGACGGAAAATGGGTGTGTTCCCGAATGGCCCC
AACGGTGAACGTGCAGCAGGCAACGTTTCATCAGCTGAAGCGCTTACAGT
CGGAAGATCTGCAGAGTGGGCTGAAACGTTTTTCGCCTCGGGCGATTTGG
GGTATCTTATCTTCATCCCCCCCTCCTATCCCGCTCTCCAGCCCGTCGAG
CTCTTCTGGGCACACAGCAAGAACTACGTGGCGTCTGTGTTCAGGGAGAA
GCGCACCATCGAAGAGATGTGGAGACAGCTTCGCGAGAGGCGGTAAGGGG
GAGACCAACCGCACCTGGGAGGGATTTGGAAGGTTTCACAGATTGCAAAA
ATCTAGTGGGACACAGCTGGAAGGAGATTAATGCTTACGTAGAGTGCGAC
GAAGTGCTGAGCGGGACCTATGACCGTCTGAAGAATGCGCCGAGCGAGTA
CGAAGTTAGGAAGGAGAGTGGTCTGGCTGAAATCGAAGTACACTTCGACG
TGACCTAGCTTGAGGGCGTCGTGACGGAGTAAGATTGCATGTAGAAGTGA
GGATACAATTTCGCGTTGTTCAGGCGCTCCATGTTACCTAGTGTCTAACC
TGGTTGACGGTAGTTTGGCAAGATCATGCGTCGTTCGTTAATCATGTATG
TTCAGTACTTGGAGCAGTGCAATCACTGTTGATGTCATTTCAGCGTGCAG
TAGTACAGGAGTGACTTCATGTTGGCAACATACGGGAGAGTCTTCAGCGT
ATGTGGTGTCACGTAAAGCGTCGTGGACAAAGACATTGCGATGCGTGTTT
ATTTGATAATTAATATGTGGTCGGGCTGAACGTCATACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig23785:403..3042+

>mRNA_H-paniculata_contig23785.6429.1 ID=mRNA_H-paniculata_contig23785.6429.1|Name=mRNA_H-paniculata_contig23785.6429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig23785:403..3042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTGCTTCGCGAATAAACATGGAGACGATGAAGATCGCGGACAT
GTTATTTGAAGCAGGCGGCATGGAGAACAGCGACTACCACAAGATCATGA
ATGCGGACATGTTCATGTTGTGGCTAGAGAGATGCCTGGTGCCAACATTT
CAAGAGCTTTACCCTGGCAAGCAGATGATACCGATCCTCGACTACGCGGC
ATACCACCATAGAATGGAGGAAGGGTGGAAAAGCCCTCTTCAGGTGATCA
AGACACATCGTGCCGACGTGCTACGTCAGTTGGGCGTTGCTTCCATCAGC
GTACCTGTGGTAGATAGTCTAATGAAGGCATACGCGGTGCGCGACGACGG
ATGGCTGCTGCTTCGCGAATAAACATGGAGACGATGAAGATCGCGGACAT
GTTATTTGAAGCAGGCGGCATGGAGAACAGCGACTACCACAAGATCATGA
ATGCGGACATGTTCATGTTGTGGCTAGAGAGATGCCTGGTGCCAACATTT
CAAGAGCTTTACCCTGGCAAGCAGATGATACCGATCCTCGACTACGCGGC
ATACCACCATAGAATGGAGGAAGGGTGGAAAAGCCCTCTTCAGGTGATCA
AGACACATCGTGCCGACGTGCTACGTCAGTTGGGCGTTGCTTCCATCAGC
GTACCTGTGGTAGATAGTCTAATGAAGGCATACGCGGTGCGCGACGACGG
ACGGTGAACGGTGA
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