mRNA_H-paniculata_contig2373.6417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2373.6417.1
Unique NamemRNA_H-paniculata_contig2373.6417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A218YTN0_9HELO (COP9 signalosome complex subunit 2 n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218YTN0_9HELO)

HSP 1 Score: 60.5 bits (145), Expect = 1.750e-8
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:   66 MGDESEEEYDFEYSDDNEEET-DVDLENSYYSAKALKTEDPRAAVEAF 206
            M D  +E YDFEY +D+EEET DVD+EN YY+AK LKT DP+AA+E F
Sbjct:    8 MQDSDQEGYDFEYEEDDEEETGDVDVENKYYNAKQLKTTDPQAAIEEF 55
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A0F8AFC1_LARCR (Selenocysteine insertion sequence-binding protein 2-like protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8AFC1_LARCR)

HSP 1 Score: 60.1 bits (144), Expect = 2.570e-8
Identity = 26/53 (49.06%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRENSLPQRL 233
            + EE+YD EYS+D+  E +VDLEN YY++KALK +DP+AA+ +F++ + P+ +
Sbjct:   11 DDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKTNFPEMM 63
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A5F8GXP3_MONDO (COP9 signalosome complex subunit 2 n=3 Tax=Amniota TaxID=32524 RepID=A0A5F8GXP3_MONDO)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-8
Identity = 26/53 (49.06%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRENSLPQRL 233
            + EE+YD EYS+D+  E +VDLEN YY++KALK +DP+AA+ +F++ + P+ +
Sbjct:   11 DDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKTNYPEMM 63
[Close]
BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A210QGP7_MIZYE (COP9 signalosome complex subunit 2 n=4 Tax=Mollusca TaxID=6447 RepID=A0A210QGP7_MIZYE)

HSP 1 Score: 59.7 bits (143), Expect = 3.220e-8
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRE 212
            + +EEYD EYS+++  E DVDLEN YY++KALK +DPRAA+E+F++
Sbjct:    9 DDDEEYDLEYSEESNSEPDVDLENQYYNSKALKEDDPRAALESFQK 54
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A3R7SSM7_PENVA (COP9 signalosome complex subunit 2 n=9 Tax=Eumalacostraca TaxID=72041 RepID=A0A3R7SSM7_PENVA)

HSP 1 Score: 59.7 bits (143), Expect = 3.220e-8
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFR 209
            + EEEYD EYS+D+  E DVDLEN YY++KALK +DPRAA+ +F+
Sbjct:   11 DDEEEYDLEYSEDSNSEPDVDLENQYYNSKALKEDDPRAALTSFQ 55
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A699YV99_HAELA (COP9 signalosome complex subunit 2 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YV99_HAELA)

HSP 1 Score: 55.1 bits (131), Expect = 3.730e-8
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 3 
Query:   66 MGDESEEEYDFEYSDDNEEETDVDLENSYYSAKAL-KTEDPRAAVEAFRE 212
            M D+  E+Y FEYS+D +EE DVD+EN YY++K L + EDP+ A+E F +
Sbjct:    1 MSDDDMEDYGFEYSEDEQEEQDVDIENQYYNSKGLLENEDPKEAIEGFNQ 50
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A2G8L5F8_STIJA (COP9 signalosome complex subunit 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L5F8_STIJA)

HSP 1 Score: 59.3 bits (142), Expect = 4.390e-8
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   72 DESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRE 212
            D+  ++YD EYS+D+  E DVDLEN YY++KALK +DPRAA+E+F++
Sbjct:    9 DDEVDDYDLEYSEDSNSEPDVDLENQYYNSKALKEDDPRAALESFQK 55
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BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A026WPG4_OOCBI (COP9 signalosome complex subunit n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WPG4_OOCBI)

HSP 1 Score: 57.4 bits (137), Expect = 6.150e-8
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRE 212
            E EE+Y  EYS+D+  E DVDLEN YY++KALK +DP+AA+++F++
Sbjct:   11 EEEEDYGLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALQSFQK 56
[Close]
BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: T1FM84_HELRO (COP9 signalosome complex subunit 2 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FM84_HELRO)

HSP 1 Score: 58.5 bits (140), Expect = 8.200e-8
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:   81 EEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRE 212
            +EEYD EYS+D+  E DVDLEN YY++KALK +DP+AA+E F++
Sbjct:   11 DEEYDLEYSEDSNSEPDVDLENQYYNSKALKEDDPKAALENFQK 54
[Close]
BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Match: A0A060Z4W4_ONCMY (Uncharacterized protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060Z4W4_ONCMY)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-7
Identity = 25/46 (54.35%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:   75 ESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFRE 212
            + EE+YD EYS+D+  E +VDLEN YY++KALK +DP+AA+ +F++
Sbjct:   11 DDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALISFQK 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2373.6417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A218YTN0_9HELO1.750e-864.58COP9 signalosome complex subunit 2 n=1 Tax=Marsson... [more]
A0A0F8AFC1_LARCR2.570e-849.06Selenocysteine insertion sequence-binding protein ... [more]
A0A5F8GXP3_MONDO3.200e-849.06COP9 signalosome complex subunit 2 n=3 Tax=Amniota... [more]
A0A210QGP7_MIZYE3.220e-858.70COP9 signalosome complex subunit 2 n=4 Tax=Mollusc... [more]
A0A3R7SSM7_PENVA3.220e-862.22COP9 signalosome complex subunit 2 n=9 Tax=Eumalac... [more]
A0A699YV99_HAELA3.730e-852.00COP9 signalosome complex subunit 2 (Fragment) n=1 ... [more]
A0A2G8L5F8_STIJA4.390e-857.45COP9 signalosome complex subunit 2 n=1 Tax=Stichop... [more]
A0A026WPG4_OOCBI6.150e-856.52COP9 signalosome complex subunit n=1 Tax=Ooceraea ... [more]
T1FM84_HELRO8.200e-861.36COP9 signalosome complex subunit 2 n=1 Tax=Helobde... [more]
A0A060Z4W4_ONCMY1.100e-754.35Uncharacterized protein n=1 Tax=Oncorhynchus mykis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2373contigH-paniculata_contig2373:2566..5498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_003570.1
Exons3
Model size312
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2373.6417.1prot_H-paniculata_contig2373.6417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2373 2597..5433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.0464497-UTR-H-paniculata_contig2373:2565..25961622929676.0464497-UTR-H-paniculata_contig2373:2565..2596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2373 2566..2596 -
1691480962.494342-UTR-H-paniculata_contig2373:2565..25961691480962.494342-UTR-H-paniculata_contig2373:2565..2596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2373 2566..2596 -
1622929676.1026611-UTR-H-paniculata_contig2373:5433..54981622929676.1026611-UTR-H-paniculata_contig2373:5433..5498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2373 5434..5498 -
1691480962.542962-UTR-H-paniculata_contig2373:5433..54981691480962.542962-UTR-H-paniculata_contig2373:5433..5498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2373 5434..5498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.0593235-CDS-H-paniculata_contig2373:2596..26651622929676.0593235-CDS-H-paniculata_contig2373:2596..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 2597..2665 -
1691480962.5065007-CDS-H-paniculata_contig2373:2596..26651691480962.5065007-CDS-H-paniculata_contig2373:2596..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 2597..2665 -
1622929676.078021-CDS-H-paniculata_contig2373:3535..36801622929676.078021-CDS-H-paniculata_contig2373:3535..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 3536..3680 -
1691480962.5175998-CDS-H-paniculata_contig2373:3535..36801691480962.5175998-CDS-H-paniculata_contig2373:3535..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 3536..3680 -
1622929676.089238-CDS-H-paniculata_contig2373:5431..54331622929676.089238-CDS-H-paniculata_contig2373:5431..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 5432..5433 -
1691480962.527701-CDS-H-paniculata_contig2373:5431..54331691480962.527701-CDS-H-paniculata_contig2373:5431..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 5432..5433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2373.6417.1

>prot_H-paniculata_contig2373.6417.1 ID=prot_H-paniculata_contig2373.6417.1|Name=mRNA_H-paniculata_contig2373.6417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MGDESEEEYDFEYSDDNEEETDVDLENSYYSAKALKTEDPRAAVEAFREN
SLPQRLCAPQDRVCRMIPSPL*
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mRNA from alignment at H-paniculata_contig2373:2566..5498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2373.6417.1 ID=mRNA_H-paniculata_contig2373.6417.1|Name=mRNA_H-paniculata_contig2373.6417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2933bp|location=Sequence derived from alignment at H-paniculata_contig2373:2566..5498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCGACTCTGCGTCGCTGACTGCCAGTGTCTGGAGCGTTGTATGATCG
AGGCATATAAAGAAAATGTGAGCTATCACCTTTGGCTAGGAAATTTTTCC
AGATATACCTCTGGTGCTTCATATCCTTCGTTATCGTGCCAGGTGTAGTA
ATCTGTGTTGCTTTGTTCAGCGTGTATTCAACAACTGACATCACACCAGA
GTGATGAACATTGAGCAAGTTGCTCTGCACATAGACAGTACAGTCTCCAG
GGTTCTACTGCAGAGTGAGAGAGAGAGACTCTGTTTCTGCACATACCTAG
CTGGTTTTCATACATCTACATCCTGTAACCATTGCTATAATAGGAACATG
GGTCTAGCACATAGGCGTGTACTTCTTTTCACGCCGAAACAACGGCGTGT
TCTCTGCTGATTTGTTCTTCGATTGGCCATATTGTAACTCTACTATTGTT
CAGCACAATAAGCGTTGCTTCACCTATCTCTGTGAGCAAAACTACTCCAT
TGCCATTATATGTGAGTAGGTAAGGGTGTTGCACGGGATGATGATGTTGC
AATCATCATCAGGATTATGCCGTTGCTACCGTTGTTCTTGTCTAGGTAAC
TTCCTAATACCTGCAAATACGCTACAGTGATTTTTTCGGAACATTTGTTT
TGAAAGCTGTACTATATACAAGAAAGTGTCACAGTTAGCAACAGCAAATC
CTGAAAGGGCATTGTGCTGCTCATGTGTGAGTGTAGAGAAGGTCTTGAGT
TTTTGCGAAGAAGGCCCCAAGGGTGCAGCCATTGCTACACCTCTAGTATC
AAGGGAACCACCCTTACGATATAGGGTACAGATCTTTCTTCTCGTAGTGG
CGAAGGAACAACTATTGATTGTCTCTCTATTGGGTAAGTCACGGAACGCG
AGGCACATGCCGAGTAGATGAGGGCTCGACTGGGCCGGCTGTGGTCTGAG
GTGATTGTGCTTCGTGTGTTGAAGAAGTGAGCGAATCGAGAGGCGGTGTG
TAAGCCCTCAGCCGCTTGGAAAAATGACGATTGCCCGGACAGGGCTACAG
TAGATGATGACCCGAAAGACTCACAGTTCTTGTACAGATGGCAAGGTGTA
CCGGCAATGTCTAAGGCTGGCACTCACAGATTCATATTATCTGTTACATG
ATACCTTATTCACAGTAAGTTGGTGAGGCCTTTTCGGAATAACTTTCCAC
CTTTGTATTACTGTACTGTTGTACTCGGGCACCCGATCACTGCGAGCGAT
TGCGCCTGGGTTCTGTTATTTTTATAAATGATAACGAGTTTGAGACAAAA
GACTGCACGGGCGGAGCACACGGCTACGCTGCTATTGATGACATATTTAA
AAAAAAAAAATGAACACCCTTTAGTTAGTGGTGATACGAGTACCAGGTGT
GAGAGCTTACAGTTCGCCACGAAAAAAAAGAAGTATTCGCCTGAGTTTCA
GAATGAACCCGTGTACTCCATGTACCCCGAACCATCCACGGTTGCTAATA
GTACTTGTAAATCAAATGGACAAGGTTGGATACTTTATTATATGCGTCCG
CTCATTCTGACTCAGCCGAACACTTTTTTTCTTTTCGTGGTGAATAGGCT
AATTATTCGTATTTGTCCGGGGGGTGTGGTATTTCAAGGAAGAGCAAATA
TTAGTAATAATTTGTCAAACTCTCCGTTTGTAGCTCAAATATCTCCTCGC
TATCCTTGGGCGACATACTACTGTTGTCGCCCAAGCCCAGCACTTGGTTT
CGGCATCCAACCTGCATGGGCGAGGAAATCCCGTTAAGTCTGTTGTTTCA
TTTTTCGGGACGAAACAGGGGCGATGAGTCTGAAGAGGAGTATGACTTCG
AGTATTCCGATGATAATGAGGAGGAAACGGATGTGGACTTGGAGAACAGC
TATTATTCCGCCAAGGCGCTGAAGACAGAAGATCCAAGAGCTGCGGTGGA
AGCCTTCCGAGAGGTAAGCCCCGGCAGACCGTTGAATGTTGGAGCTCTCA
TGGGGTTTAGTTGAAACTTGAAAATATGTCTCTTTTTTTTTTTTTTCCGT
GAAAGAGGGTTGGCGCTCTCTACATTTTTCTTTTCTTTTCTTAATCTCCC
TTGAGAGAATTATACGCAGCAGAATCGGTGAATCCAGCAAAAGAGCCACC
TACGTACCCGCCAGGACACCTCCACAGTTGAAGGTTATCCACCATTATGT
ACAAACGGCTGGTGTATGTCGCGGATAATTGAAGCATGAAAAGCGCTAAT
CGTATAAAACAGTGATAGTCGTTATGGTGTTTTACCCTTCTTTACTGCTA
GTACAATATGGTAATGTAATGGGACCATAATGTGTAGAATCGTCGATAAA
ACGGCGTGGCTCTACGCCAACAAAAAAACATATCCTTCACATCGTGGTGA
GCGATGGCATGATAGCAGGCGGCAAACCATCTGTACTTTAAGTTATTTTC
CTGGGGACGATTCGTTTCCCCCCCCTGCATACGCCTGACCAACGTTACCT
TAATTCACCGTTAGTAACGTAGATCTCCTTACGGCAGCATCACACATTGT
ACATGAGATTTCTTGAGCTACAGAGAGACAACATGGATAATGTCAAACGC
TCTGTAAAGCTCCACACCCCAGCGACTACCCCGCGAAAGTGCGAAGTGGT
CTACTCATGTGCCAACATTTGCGGTCAAGTTATTGATAATGTCTCCAAAT
CACAAATCGCCTAATGACCGACCACCCCTTGTATATAACGGGTGGTCATG
TTCCAACTGCTCGTCAGAATCGATTGTCGCTGATCTCTCTCACGCTATGC
TACCGCTCACGCGACGCCACTTCACACGCGCAGAACTCTCTTCCTCAGAG
GTTGTGTGCGCCCCAAGATCGGGTGTGTCGAATGATACCTTCTCCTCTTT
AGCTTGGCTGTGAGGTGGCCGCTGAGGATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2373:2566..5498-

>mRNA_H-paniculata_contig2373.6417.1 ID=mRNA_H-paniculata_contig2373.6417.1|Name=mRNA_H-paniculata_contig2373.6417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig2373:2566..5498- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGGGCGATGAGTCTGAAGAGGAGTATGACTTCGAGTATTCCGATGAT
AATGAGGAGGAAACGGATGTGGACTTGGAGAACAGCTATTATTCCGCCAA
GGCGCTGAAGACAGAAGATCCAAGAGCTGCGGTGGAAGCCTTCCGAGAGG
GGCGATGAGTCTGAAGAGGAGTATGACTTCGAGTATTCCGATGATAATGA
GGAGGAAACGGATGTGGACTTGGAGAACAGCTATTATTCCGCCAAGGCGC
TGAAGACAGAAGATCCAAGAGCTGCGGTGGAAGCCTTCCGAGAGAACTCT
CTTCCTCAGAGGTTGTGTGCGCCCCAAGATCGGGTGTGTCGAATGATACC
TTCTCCTCTTTAGAACTCTCTTCCTCAGAGGTTGTGTGCGCCCCAAGATC
GGGTGTGTCGAATGATACCTTCTCCTCTTTAG
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