mRNA_H-paniculata_contig23668.6396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23668.6396.1
Unique NamemRNA_H-paniculata_contig23668.6396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23668.6396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23668contigH-paniculata_contig23668:1689..2092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size184
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23668.6396.1prot_H-paniculata_contig23668.6396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23668 1728..2092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.7479162-UTR-H-paniculata_contig23668:1688..17271622929673.7479162-UTR-H-paniculata_contig23668:1688..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23668 1689..1727 +
1691480961.464382-UTR-H-paniculata_contig23668:1688..17271691480961.464382-UTR-H-paniculata_contig23668:1688..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23668 1689..1727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.7631738-CDS-H-paniculata_contig23668:1727..18131622929673.7631738-CDS-H-paniculata_contig23668:1727..1813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23668 1728..1813 +
1691480961.4752724-CDS-H-paniculata_contig23668:1727..18131691480961.4752724-CDS-H-paniculata_contig23668:1727..1813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23668 1728..1813 +
1622929673.7766507-CDS-H-paniculata_contig23668:2034..20921622929673.7766507-CDS-H-paniculata_contig23668:2034..2092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23668 2035..2092 +
1691480961.4847596-CDS-H-paniculata_contig23668:2034..20921691480961.4847596-CDS-H-paniculata_contig23668:2034..2092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23668 2035..2092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23668.6396.1

>prot_H-paniculata_contig23668.6396.1 ID=prot_H-paniculata_contig23668.6396.1|Name=mRNA_H-paniculata_contig23668.6396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MSEQAGASIHSARLLGCLGNTNFRDQKYCVPGTSYGAPQGFIKSAAFV
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mRNA from alignment at H-paniculata_contig23668:1689..2092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23668.6396.1 ID=mRNA_H-paniculata_contig23668.6396.1|Name=mRNA_H-paniculata_contig23668.6396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=404bp|location=Sequence derived from alignment at H-paniculata_contig23668:1689..2092+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTAATAGAAGGTGAAGCTGTACCTGCGCCTCCAATCCATGTCAGAACA
AGCTGGTGCTAGCATTCATAGTGCACGCCTACTAGGATGCCTGGGAAATA
CAAACTTCCGTGACCAAAAATATTGGTGGGTGGTGTTCCCAAGTTATCAT
CTCTACATGTAGTCGAGGCAGAAAACAGGCCAGCCTCCGGAAAATGGAAA
GAGCAGGTCCGCTGTTTTCCAACTAGAGCGTCCTAGTGACTATTTGAACG
ACCGATCGATGTAAGATTTGAACTTTGATCTCGCGTACACTCCTGCACCC
ACCTACACGCTCATGTGTTGTATTGCTCGATTTCTCCCACAACCAGCGTG
CCGGGGACGAGCTATGGAGCTCCCCAGGGTTTCATAAAGTCGGCGGCGTT
TGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig23668:1689..2092+

>mRNA_H-paniculata_contig23668.6396.1 ID=mRNA_H-paniculata_contig23668.6396.1|Name=mRNA_H-paniculata_contig23668.6396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig23668:1689..2092+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGAACAAGCTGGTGCTAGCATTCATAGTGCACGCCTACTAGGATG
CCTGGGAAATACAAACTTCCGTGACCAAAAATATTGATGTCAGAACAAGC
TGGTGCTAGCATTCATAGTGCACGCCTACTAGGATGCCTGGGAAATACAA
ACTTCCGTGACCAAAAATATTGCGTGCCGGGGACGAGCTATGGAGCTCCC
CAGGGTTTCATAAAGTCGGCGGCGTTTGTTCGTGCCGGGGACGAGCTATG
GAGCTCCCCAGGGTTTCATAAAGTCGGCGGCGTTTGTT
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