mRNA_H-paniculata_contig23640.6387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23640.6387.1
Unique NamemRNA_H-paniculata_contig23640.6387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: K5WDQ3_AGABU (Uncharacterized protein n=2 Tax=Agaricus bisporus TaxID=5341 RepID=K5WDQ3_AGABU)

HSP 1 Score: 78.2 bits (191), Expect = 1.660e-16
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   37 PGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKLSPVIATQTTVSIVITATAEQETIVVATKKNSGKSPRSKTVLILPQVHLRKPC 336
            P SARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV   FL+       +TT    +     Q  + +  + +   S +  +++ILPQVHLRKPC
Sbjct:    6 PRSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVADHFLQYLK----KTTKGAQVDENEVQTGVHILRRASYNPSRKHNSIMILPQVHLRKPC 101          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A1L9WEI9_ASPA1 (Uncharacterized protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1L9WEI9_ASPA1)

HSP 1 Score: 76.6 bits (187), Expect = 8.650e-16
Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   10 LRQACSQEYPGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKLSPVIATQTTVSIVITATAEQETIVVATKKNSGKSPRSKTVLILPQVHLRKPC 336
            L QAC    PG A CVQ  DDSL+SA   +YRISLRSSS+ EPR P LKVL  + + +     QT     +     +       K    K   + +V+ILPQVHLRKPC
Sbjct:    3 LGQACPPGIPGGAMCVQRLDDSLNSAIHISYRISLRSSSMPEPRDPLLKVLTDWYQSTQTARFQTVFHWGLRRARSRGQAPGRPKAGPPKQQGTHSVMILPQVHLRKPC 111          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.140e-13
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 2
Query:   11 SDKHAPRSIPEAQDAFKVLMIHWILQVARRIAFRCVLHRWGSQDIRR 151
            SDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHR G+ DI R
Sbjct:    8 SDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A6A6EYI2_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6EYI2_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 1.650e-12
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   37 PGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKL---SPVIATQTTVSIVITATAEQETIVVATKKNSGKSPRSKTVLILPQVHLRKPC 336
            P  A CVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL   LKL     V+A + T  +      E E             P S  V+I PQVHLR+PC
Sbjct:    6 PKGAICVQRFDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLFNLLKLRRKDAVVAPEATSCVHKGLEVEPE------------GPHS--VMIPPQVHLRRPC 94          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A2I1BSD4_ASPN1 (Uncharacterized protein n=1 Tax=Aspergillus novofumigatus (strain IBT 16806) TaxID=1392255 RepID=A0A2I1BSD4_ASPN1)

HSP 1 Score: 67.8 bits (164), Expect = 2.570e-12
Identity = 51/112 (45.54%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   31 EYPGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKLSPVIATQTTVSIVITA----------TAEQETIVVATKKNSGKSPRSKTVLILPQVHLRKPC 336
            EY G A CVQ  DDSL+SA   TYRISLRSSS+ EPR P LKVL  +     +   +T   +  +A           A+Q TI    + +  + P S  V+ILPQVHLRKPC
Sbjct:    4 EYQGGAMCVQRLDDSLNSAIHITYRISLRSSSMPEPRDPLLKVLTDYDNQLRLHTFRTAFMLGSSAGAGPGREASPAAQQGTIDTGGRLDP-EGPHS--VMILPQVHLRKPC 112          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: W6MTK3_9ASCO (Uncharacterized protein n=1 Tax=Kuraishia capsulata CBS 1993 TaxID=1382522 RepID=W6MTK3_9ASCO)

HSP 1 Score: 67.0 bits (162), Expect = 3.470e-12
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   46 ARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKLSPVIATQTTVSIVITATAEQETIVVATKKNSGKSPRSKTVLILPQVHLRKPC 336
            A CVQ FDDS  SA   TYRISLRSSS+ EPR P LKV   F + S V+  + T S++  + A Q       +K S +    +T +ILPQVHLRKPC
Sbjct:    9 AMCVQRFDDSRKSAIHNTYRISLRSSSMREPRDPLLKVFTPFDQ-SKVVFNKNT-SVIRFSLAAQA------RKGSARKA-IETEMILPQVHLRKPC 96          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 64.3 bits (155), Expect = 2.140e-11
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 2
Query:    5 GGSDKHAPRSIPEAQDAFKVLMIHWILQVARRIAFRCVLHRWGSQDI 145
            G SDKHA    P+AQ AFK LMIH +LQ A RIAFRCVLHR G QDI
Sbjct:   31 GHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 4.030e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 2
Query:   11 SDKHAPRSIPEAQDAFKVLMIHWILQVARRIAFRCVLHRWGSQDIRR 151
            S +HA   IPEAQ AFK+LMIH +LQ A RIAFRCVLHR G+ DI R
Sbjct:   73 STRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 62.8 bits (151), Expect = 7.230e-11
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 2
Query:    5 GGSDKHAPRSIPEAQDAFKVLMIHWILQVARRIAFRCVLHRWGSQDI 145
            G SDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHR G QDI
Sbjct:   24 GHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70          
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Match: A0A833VLW4_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VLW4_9POAL)

HSP 1 Score: 64.7 bits (156), Expect = 9.460e-11
Identity = 51/139 (36.69%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   10 LRQACSQEYPGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPSLKVLQTFLKL---SPVIATQTTVSIVITATAEQETIVVA----TKKNSGKSP-----------------------RSKTVLILPQVHLRKPC 336
            +RQAC +E    A CVQ  D S DSA + TYRISLRSSS+ EPR+P  +V+  F+ L   +P  +      +V+    +    V A     ++  GK P                       R  T +ILPQVHLRKPC
Sbjct:   13 MRQACPREGTSGATCVQRLDGSRDSAIQTTYRISLRSSSMREPRYPLPRVILFFVGLRQPAPPRSGSPAPQLVLVFLGDIPRRVPARGHRARRARGKRPAGAEEAASASRAAICHACNGRVFREATTMILPQVHLRKPC 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23640.6387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K5WDQ3_AGABU1.660e-1648.00Uncharacterized protein n=2 Tax=Agaricus bisporus ... [more]
A0A1L9WEI9_ASPA18.650e-1644.95Uncharacterized protein n=3 Tax=Aspergillus TaxID=... [more]
A0A1E7F0G0_9STRA7.140e-1370.21Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A6A6EYI2_9PEZI1.650e-1248.54Uncharacterized protein n=1 Tax=Cercospora zeae-ma... [more]
A0A2I1BSD4_ASPN12.570e-1245.54Uncharacterized protein n=1 Tax=Aspergillus novofu... [more]
W6MTK3_9ASCO3.470e-1249.48Uncharacterized protein n=1 Tax=Kuraishia capsulat... [more]
B8CEF4_THAPS2.140e-1170.21Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A524MI88_9PROT4.030e-1168.09Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
K0S3C5_THAOC7.230e-1165.96Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A833VLW4_9POAL9.460e-1136.69Uncharacterized protein n=1 Tax=Carex littledalei ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23640contigH-paniculata_contig23640:119..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog5341.XP_007335979.1
Hectar predicted targeting categoryother localisation
EggNOG OGs22CSS@155619,2E6PU@1,2SDCQ@2759,3A8A2@33154,3P7CI@4751,3V2ZF@5204,3W9JE@5338
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.5479689-CDS-H-paniculata_contig23640:118..2951622929672.5479689-CDS-H-paniculata_contig23640:118..295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23640 119..295 +
1691480961.0207438-CDS-H-paniculata_contig23640:118..2951691480961.0207438-CDS-H-paniculata_contig23640:118..295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23640 119..295 +
1622929672.5589492-CDS-H-paniculata_contig23640:481..6401622929672.5589492-CDS-H-paniculata_contig23640:481..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23640 482..640 +
1691480961.0311358-CDS-H-paniculata_contig23640:481..6401691480961.0311358-CDS-H-paniculata_contig23640:481..640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23640 482..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23640.6387.1prot_H-paniculata_contig23640.6387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23640 119..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23640.6387.1

>prot_H-paniculata_contig23640.6387.1 ID=prot_H-paniculata_contig23640.6387.1|Name=mRNA_H-paniculata_contig23640.6387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MRGLRQACSQEYPGSARCVQSFDDSLDSASRKTYRISLRSSSLGEPRHPS
LKVLQTFLKLSPVIATQTTVSIVITATAEQETIVVATKKNSGKSPRSKTV
LILPQVHLRKPC
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mRNA from alignment at H-paniculata_contig23640:119..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23640.6387.1 ID=mRNA_H-paniculata_contig23640.6387.1|Name=mRNA_H-paniculata_contig23640.6387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at H-paniculata_contig23640:119..640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGGCTCCGACAAGCATGCTCCCAGGAGTATCCCGGAAGCGCAAG ATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCAAGACGT ATCGCATTTCGCTGCGTTCTTCATCGTTGGGGGAGCCAAGACATCCGTCG CTGAAAGTTTTACAAACGTTTCTCAAGGTTGGACGGGGGGACATCGCGGC CCGAGGACCAAGATATTCCCCCCGCCCTTCAAGGTTCAGACTCAGAGTTT ACTTTGGGGTTTGAAAAGGGGGTGCGCTTTGATTGGAGCCTTGCAGGATC GGCAAGGCGTAGACTCGCCCGACTTCTAATAATTGGAATAAGAGAATCAT TCGCAGGGTTGAGTTGTCGCCCGTCATTGCCACCCAAACGACGGTCAGCA TAGTAATAACGGCAACCGCCGAACAGGAAACAATCGTAGTGGCGACGAAG AAGAACTCGGGCAAAAGCCCGAGATCCAAAACGGTACTGATCCTTCCGCA GGTTCACCTACGGAAACCTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig23640:119..640+

>mRNA_H-paniculata_contig23640.6387.1 ID=mRNA_H-paniculata_contig23640.6387.1|Name=mRNA_H-paniculata_contig23640.6387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig23640:119..640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGGCTCCGACAAGCATGCTCCCAGGAGTATCCCGGAAGCGCAAG
ATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCAAGACGT
ATCGCATTTCGCTGCGTTCTTCATCGTTGGGGGAGCCAAGACATCCGTCG
CTGAAAGTTTTACAAACGTTTCTCAAGATGAGGGGGCTCCGACAAGCATG
CTCCCAGGAGTATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATT
CACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCA
TCGTTGGGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAAACGTTTCT
CAAGTTGTCGCCCGTCATTGCCACCCAAACGACGGTCAGCATAGTAATAA
CGGCAACCGCCGAACAGGAAACAATCGTAGTGGCGACGAAGAAGAACTCG
GGCAAAAGCCCGAGATCCAAAACGGTACTGATCCTTCCGCAGGTTCACCT
ACGGAAACCTTGTTTGTCGCCCGTCATTGCCACCCAAACGACGGTCAGCA
TAGTAATAACGGCAACCGCCGAACAGGAAACAATCGTAGTGGCGACGAAG
AAGAACTCGGGCAAAAGCCCGAGATCCAAAACGGTACTGATCCTTCCGCA
GGTTCACCTACGGAAACCTTGT
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