mRNA_H-paniculata_contig2355.6362.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2355.6362.1
Unique NamemRNA_H-paniculata_contig2355.6362.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.300e-44
Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            PEG     G   K NK +YG+  A R W   +   L  +GF Q  AD+CVFR I +G V +  V HVDD F I  +     ++   DL +   +++LG+ ++Y GC   RD      KI Q  YA+ +   FG+     +P  VG K LS+ D    Q+E  E+  +P+RE + +LM  AT TRPDIA AVR +A++C +P   H +A   IL  V+RT+DLGI +  G  + L M  + D+DY       R  + GL      GGG I W SRT++     T EAEYV+L + ++
Sbjct:   58 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 341          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.520e-43
Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            PEG     G   K NK +YG+  A R W   +   L  +GF Q  AD+CVFR I +G V +  V HVDD F I  +     ++   DL +   +++LG+ ++Y GC   RD      KI Q  YA+ +   FG+     +P  VG K LS+ D    Q+E  E+  +P+RE + +LM  AT TRPDIA AVR +A++C +P   H +A   IL  V+RT+DLGI +  G  + L M  + D+DY       R  + GL      GGG I W SRT++     T EAEYV+L + ++
Sbjct:  232 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 515          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.320e-43
Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            P+G     G   K  K +YG+  A R W   +   L A+GFEQ  AD+CVFR I DG V +I V HVDD F +  +     ++  ADL     +++LGE ++Y GC   R+K      I Q  +   +A  +G+V    +P + G K LS  D      E      FP+RE V +LM  AT TRPDIA AVR +A++C +P   H  A   IL    RT+  GI +  G      +  YAD+D+                 GGGA+ W SRT++     T EAEYVAL + V+
Sbjct:   82 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 365          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A182HAB7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB7_AEDAL)

HSP 1 Score: 159 bits (403), Expect = 2.450e-42
Identity = 89/287 (31.01%), Postives = 155/287 (54.01%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGK-PLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVAL 858
            PEGY   P    K  K +YG+  + R W+ ++ E LKA G  +S+ D C++  + +    +    +VDDFL+      + ++L   L S++ ++++GEAK+ LG  I RD+   +  +DQ  Y + + + F +  +  +   +     L K  GP+T EE+ E++  P++EAV +L+  A  TRPDIA+AV  +++F  NPGR H +AV++I+  +  T D  ++Y  +  + ++  Y D+D+ G P              GGA+ W  + +   A  + EAE++AL
Sbjct:   35 PEGYVVDPTKVCKLQKALYGLKQSSRVWNTQLDEALKAFGLIRSNLDPCLYFILKEDGKMLFVTIYVDDFLVFTNDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITRDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVKLDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIMRYLRGTLDAKLMYT-RGGDSQLTGYTDADWGGDPDTRKSTTGYVFRKMGGAVSWSVKRQPSVALSSCEAEFIAL 320          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.450e-42
Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            PEG     G   K NK +YG+  A R W   +   L  +GF Q  AD+CVFR I +G V +  V HVDD F I  +     ++   DL +   +++LG+ ++Y GC   RD      KI Q  YA+ +   FG+     +P  VG K LS+ D    Q+E  E+  +P+RE + +LM  AT TRPDIA AVR +A++C +P   H +A   IL  V+RT+DLGI +  G  + L M  + D+DY       R  + GL      GGG I W SRT++     T EAEYV+L + ++
Sbjct:  753 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 1036          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A165U314_9ROSI (Gag/pol protein n=1 Tax=Momordica dioica TaxID=654836 RepID=A0A165U314_9ROSI)

HSP 1 Score: 163 bits (412), Expect = 1.600e-41
Identity = 100/292 (34.25%), Postives = 158/292 (54.11%), Query Frame = 1
Query:    1 PEGY--QEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIV--KTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVE 864
            PEG+  Q+    A K    IYG+  A R W+++  E +KA GF Q+  +SCV++KIS   V  + + +VDD L+       +E++   L + + ++DLGEA+Y LG  I RD+  +   + Q  Y   +   F +   K  +LP    G  LSKE  P+T +EV++++  PY  A+ +LM     TRPD+ YA+  ++++  NPGR H  AV+ IL  + RT ++ ++YGG + +L +  Y DS +    +  +        + GGA+ W S  +   A  T EAEYVA  E
Sbjct:  951 PEGFVAQDQEQKACKLQGSIYGLKQASRSWNIRFDEVIKAFGFIQNVDESCVYKKISGSVVAFL-ILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFR-HGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGG-DKDLAVKGYTDSSFQ-TDKDDSKSQSGVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACE 1238          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A4S4K4J9_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4J9_9APHY)

HSP 1 Score: 157 bits (398), Expect = 2.590e-41
Identity = 102/287 (35.54%), Postives = 150/287 (52.26%), Query Frame = 1
Query:   22 PGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVF-RKIS--DGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGI-----VKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVAL 858
            PG   K    +YG+  AGR W  K+ + L+ +GF +S  D  VF R++S  +G    +   HVDD  + +     M +L+A L+S++ + + G   Y LG HI RD+ +R     Q  Y   I   +       V T M P       LSKE    ++ + +E++  PYREA+ ALM  +  TRPDI YAV T+AKF +NPG TH  A++++   +  T    +  GG +SE+ +  Y DSD  GM R     +  Y    GGAI W S+ +++    T EAEY+AL
Sbjct:   47 PGQVLKLRACLYGLKQAGRRWYQKLRDALRQIGFTRSQFDHAVFYRRLSPAEGSGTAVIFCHVDDMGL-KANKKYMPQLIAALRSRFELSEGGRIHYLLGMHITRDREKRTISFSQXAYINRILTRYRFDEVRTVTTPMDPNVA----LSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGGDSSEV-LTGYCDSD--GMSRPDRHPIAAYVFTIGGAISWSSKRQDIVCLSTTEAEYIAL 325          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.110e-41
Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            P+G     G   K  K +YG+  A R W   +   L A+GFEQ  AD+CVFR I DG V +I V HVDD F +  +     ++  ADL     +++LGE ++Y GC   R+K      I Q  +   +A  +G+V    +P + G K LS  D      E      FP+RE V +LM  AT TRPDIA AVR +A++C +P   H  A   IL    RT+  GI +  G      +  YAD+D+                 GGGA+ W SRT++     T EAEYVAL + V+
Sbjct: 1418 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1701          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.120e-41
Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            P+G     G   K  K +YG+  A R W   +   L A+GFEQ  AD+CVFR I DG V +I V HVDD F +  +     ++  ADL     +++LGE ++Y GC   R+K      I Q  +   +A  +G+V    +P + G K LS  D      E      FP+RE V +LM  AT TRPDIA AVR +A++C +P   H  A   IL    RT+  GI +  G      +  YAD+D+                 GGGA+ W SRT++     T EAEYVAL + V+
Sbjct: 1204 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1487          
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.260e-41
Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query:    1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
            P+G     G   K  K +YG+  A R W   +   L A+GFEQ  AD+CVFR I DG V +I V HVDD F +  +     ++  ADL     +++LGE ++Y GC   R+K      I Q  +   +A  +G+V    +P + G K LS  D      E      FP+RE V +LM  AT TRPDIA AVR +A++C +P   H  A   IL    RT+  GI +  G      +  YAD+D+                 GGGA+ W SRT++     T EAEYVAL + V+
Sbjct: 1272 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1555          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE2.300e-4437.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.520e-4337.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE5.320e-4336.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182HAB7_AEDAL2.450e-4231.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE2.450e-4237.84Integrase catalytic domain-containing protein n=3 ... [more]
A0A165U314_9ROSI1.600e-4134.25Gag/pol protein n=1 Tax=Momordica dioica TaxID=654... [more]
A0A4S4K4J9_9APHY2.590e-4135.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE3.110e-4136.52Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.120e-4136.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.260e-4136.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2355contigH-paniculata_contig2355:11527..12408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.6
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size882
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2355.6362.1prot_H-paniculata_contig2355.6362.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2355 11878..12348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.584571-UTR-H-paniculata_contig2355:11526..118771622929669.584571-UTR-H-paniculata_contig2355:11526..11877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2355 11527..11877 -
1691480959.7831461-UTR-H-paniculata_contig2355:11526..118771691480959.7831461-UTR-H-paniculata_contig2355:11526..11877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2355 11527..11877 -
1622929669.620741-UTR-H-paniculata_contig2355:12348..124081622929669.620741-UTR-H-paniculata_contig2355:12348..12408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2355 12349..12408 -
1691480959.8178384-UTR-H-paniculata_contig2355:12348..124081691480959.8178384-UTR-H-paniculata_contig2355:12348..12408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2355 12349..12408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.6029854-CDS-H-paniculata_contig2355:11877..123481622929669.6029854-CDS-H-paniculata_contig2355:11877..12348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 11878..12348 -
1691480959.8046734-CDS-H-paniculata_contig2355:11877..123481691480959.8046734-CDS-H-paniculata_contig2355:11877..12348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 11878..12348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2355.6362.1

>prot_H-paniculata_contig2355.6362.1 ID=prot_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDF
LIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQ
HLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYRE
AVRALM*
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mRNA from alignment at H-paniculata_contig2355:11527..12408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2355.6362.1 ID=mRNA_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig2355:11527..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGAGGGATACCAGGAGTTTCCGGGAGCAGCAGGGAAATTCAACAAGGT CATCTACGGGATGGTTCACGCTGGACGCTGCTGGAGCATGAAGGTCACCG AGAATCTGAAGGCAGTCGGATTCGAGCAGTCACACGCCGACTCATGTGTT TTCCGCAAAATCAGTGACGGAGAAGTGAGGATGATCGGCGTCAGTCACGT GGATGATTTCCTGATCGCTAGGAAAGGGCCAGTGATCATGGAGGAACTCT TGGCGGACCTACAATCTAAGTACCTAATCAGAGACTTAGGTGAAGCCAAA TACTACCTAGGATGCCACATCCCCCGCGACAAGCTAAGGAGGGAATTCAA GATCGACCAGCACCTCTACGCTCAAACAATCGCCGAACTCTTCGGGATCG TCAAGACCAGCATGCTCCCTGGAACGGTGGGAGGGAAGCCATTGTCCAAG GAAGACGGGCCACGGACCCAGGAAGAAGTCCAGGAGATTCAAATTTTCCC GTACAGGGAAGCAGTGAGAGCACTCATGTGAACGGCGACGATGACGCGGC CTGATATCGCATACGCCGTTCGTACTATCGCGAAGTTCTGCGAGAACCCC GGAAGGACGCACAAGAAAGCTGTGGAGAAGATCCTGTAGTTGGTGTTAAG GACCGCAGACCTGGGCATCATATATGGCGGCCAAAATTCTGAGTTGAAGA TGCTGGCGTACGCGGACTCGGACTACACGGGCATGCCCAGACAGCCGGCA TTCGGTCTCCAGCGGTACGGCGCTGTTGGGGGGGGCGCGATTTGCTGGCA CTCCAGGACCCGGGAAGTGACAGCGGCAGGGACGAGGGAGGCGGAATACG TTGCACTGGTGGAATTCGTCAGGCACAGATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2355:11527..12408-

>mRNA_H-paniculata_contig2355.6362.1 ID=mRNA_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig2355:11527..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCACGCTGGACGCTGCTGGAGCATGAAGGTCACCGAGAATCTGAA
GGCAGTCGGATTCGAGCAGTCACACGCCGACTCATGTGTTTTCCGCAAAA
TCAGTGACGGAGAAGTGAGGATGATCGGCGTCAGTCACGTGGATGATTTC
CTGATCGCTAGGAAAGGGCCAGTGATCATGGAGGAACTCTTGGCGGACCT
ACAATCTAAGTACCTAATCAGAGACTTAGGTGAAGCCAAATACTACCTAG
GATGCCACATCCCCCGCGACAAGCTAAGGAGGGAATTCAAGATCGACCAG
CACCTCTACGCTCAAACAATCGCCGAACTCTTCGGGATCGTCAAGACCAG
CATGCTCCCTGGAACGGTGGGAGGGAAGCCATTGTCCAAGGAAGACGGGC
CACGGACCCAGGAAGAAGTCCAGGAGATTCAAATTTTCCCGTACAGGGAA
GCAGTGAGAGCACTCATGTGAATGGTTCACGCTGGACGCTGCTGGAGCAT
GAAGGTCACCGAGAATCTGAAGGCAGTCGGATTCGAGCAGTCACACGCCG
ACTCATGTGTTTTCCGCAAAATCAGTGACGGAGAAGTGAGGATGATCGGC
GTCAGTCACGTGGATGATTTCCTGATCGCTAGGAAAGGGCCAGTGATCAT
GGAGGAACTCTTGGCGGACCTACAATCTAAGTACCTAATCAGAGACTTAG
GTGAAGCCAAATACTACCTAGGATGCCACATCCCCCGCGACAAGCTAAGG
AGGGAATTCAAGATCGACCAGCACCTCTACGCTCAAACAATCGCCGAACT
CTTCGGGATCGTCAAGACCAGCATGCTCCCTGGAACGGTGGGAGGGAAGC
CATTGTCCAAGGAAGACGGGCCACGGACCCAGGAAGAAGTCCAGGAGATT
CAAATTTTCCCGTACAGGGAAGCAGTGAGAGCACTCATGTGA
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