mRNA_H-paniculata_contig2346.6333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2346.6333.1
Unique NamemRNA_H-paniculata_contig2346.6333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 1.110e-102
Identity = 169/330 (51.21%), Postives = 213/330 (64.55%), Query Frame = 1 
Query:   94 MSSPSSAVNPFERFALGST---------AVAVAPAAVQL--DNERHRRKKRMRTIKDSEVANAAESREPKGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGC-----------------VSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEELGG-WNRKISYRS 996
            MS   +  NPF  FALG++              PAA +L  D+   +  K+MRT   ++  + A     KGLVEKY+SPGEPEWPL+LI+VGHNPS  AW+ GHYY NPSNRM+KLL++A IIP GF+A +D+ CPI  GVGFTDVGFS+PGTVSSEF K +LH+WR GF++RL AHA RAAAT  A++                                   +  G P+I+ FAGKRQWEELF+DA  + KA+T+GG  G FRFG QP+ LRPPGWPFP+E TE+FVVPSSSGAAAMT+ AR  PY +LG+H+ + GG W  +   +S
Sbjct:    1 MSLEQNDENPFNEFALGASPSGSGPIPGVTRARPAAARLLMDSLDSKPVKKMRTSTGAKGQSTA-----KGLVEKYRSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHRRGQQS 325
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA)

HSP 1 Score: 198 bits (504), Expect = 6.440e-57
Identity = 105/231 (45.45%), Postives = 139/231 (60.17%), Query Frame = 1 
Query:  271 GLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEEL 963
            GL EKY   G+PE PL+L++VGHNPS  AW+ GHYY+NPSNRM+ LL   KIIP G++A DDD+CP  CG+GFTD+G+  PGT S++F    LHAWR   + RL +HARRA A                             PKIV F GKRQ+ ELF+D+          G++          + RP G+PF +  T++FV+ SSSGAAAM++AAR  PY EL + L+++
Sbjct:   93 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRAGAP----------------------------PKIVAFTGKRQFRELFFDSKAYKSISISYGLQ----------SARPDGFPFNANETKLFVLTSSSGAAAMSNAAREMPYQELAQLLKQI 282
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.720e-56
Identity = 106/231 (45.89%), Postives = 139/231 (60.17%), Query Frame = 1 
Query:  271 GLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEEL 963
            GL EKY   G+PE PL+L++VGHNPS  AW+ GHYY+NPSNRM+ LL   KIIP G++A DDD+CP  CG+GFTD+G+  PGT SS F    LHAWR   + RL +HARRA A                             PKIV F GKRQ+ ELF+D+          G++          + RP G+PF ++ T++FV+ SSSGAAAM++AAR  PY EL + L+++
Sbjct:  196 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAP----------------------------PKIVAFTGKRQFRELFFDSKAYKSISISYGLQ----------SARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQI 385
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 4.630e-48
Identity = 97/242 (40.08%), Postives = 131/242 (54.13%), Query Frame = 1 
Query:  292 SPGEPE----WPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPII-CGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEELGGWNRKISYRSMR 1002
            +PG PE     PL+LI+VGHNPS+ AW+ GHYY+NPSN M+++L   +I P   +    D C     GVGFTDVG  +PGT+SS+F       W  GF+ RL AH  RA+ +                      C  CG P +V F+GKRQW EL     K     T        +F   P  +RP GWP P +STE++V+ S+SGA+ MT+ AR  P+ EL K L +L  W R++  R ++
Sbjct:  106 APGVPEKLGDHPLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCT------------------CGKCGAPALVAFSGKRQWSELINTGRKGKNKLT--------KFATGPQNMRPEGWPLP-DSTEVWVMTSTSGASPMTTEARMAPWHELSKQLMQLS-WPRQVDCRCIK 319
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB)

HSP 1 Score: 171 bits (434), Expect = 4.770e-46
Identity = 97/234 (41.45%), Postives = 128/234 (54.70%), Query Frame = 1 
Query:  268 KGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMD-DDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELF-YDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEEL 963
            KGL EK  +      PL+LI++GHNPS  AW  GHYY+NPSNRM+++L +A I P G S  + DD  P   GVGFTDVG   PGT SS F   D   WR  F+ RL AH  +AA+ ++                    C  CG P++V F GKR + EL   DA  + +             G QP    PPGWP P++ TE++V+ S+SGAA M++ AR  PY +L + L +L
Sbjct:  115 KGLPEKLGAA-----PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAH-MKAASDSIGCS-----------------CGRCGAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPMSNQAREAPYRQLAQRLAQL 325
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A482SFZ9_9ARCH (UDG domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFZ9_9ARCH)

HSP 1 Score: 168 bits (426), Expect = 3.630e-45
Identity = 113/232 (48.71%), Postives = 138/232 (59.48%), Query Frame = 1 
Query:  268 KGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEEL 963
            KGL E Y +PG  E  L+L+++GHNPS+ AW +GHYYANPSNRM+ LL  A I+P  F+A  D  CP +CGVGFTDV F V  T SS F+   L A    FF RL AH  R     V     XXXXXXXXXXX      S   P I+ FAG RQW  LF  + K              RFG Q  T RPP WP    S+++F++PS+SGAAAMT+  R +PYI+LG  L+ +
Sbjct:  106 KGLGEMYCTPGTEEKRLRLLIIGHNPSHQAWTKGHYYANPSNRMWPLLTKAGIVPSHFNANSDLLCPSVCGVGFTDVMFGVGETDSSLFSDEALRACTAPFFARLVAHCHR-----VRNNHHXXXXXXXXXXXEDAAAYS---PLILAFAGVRQWRCLFPPSSKWET-----------RFGLQ--TNRPPNWPPELASSQVFLLPSTSGAAAMTTQQREEPYIQLGMLLKSM 316
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BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE)

HSP 1 Score: 162 bits (411), Expect = 1.960e-43
Identity = 98/231 (42.42%), Postives = 128/231 (55.41%), Query Frame = 1 
Query:  265 PKGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGF-SAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHL 954
            P+G+ EK       + PL+L++VGHNPS  AWQ GHYY+NPSN M+++L +  I P G   A DDD+ P   GVGF DVG   PGT SS FA     AW   F++RL+AH  RAAA+                      C  CG P++V F+GKRQ+ EL  +  +  + + +     T  FG  P +  P GWPFP  STE++V  S+SGAAAMT   R  PY  L + L
Sbjct:   38 PRGVPEKLG-----DAPLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIGCT------------------CGLCGAPRLVAFSGKRQFLELL-NVGRSGRDRAK-----TVEFG--PQSELPRGWPFP-RSTEVWVCSSTSGAAAMTKEQREGPYKRLAERL 236
[Close]
BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A830HJU9_9CHLO (UDG domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HJU9_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 3.270e-42
Identity = 110/304 (36.18%), Postives = 140/304 (46.05%), Query Frame = 1 
Query:  103 PSSAVNPFERFALGSTAV-AVAPAAVQ---------LDNERHRRKKRMRTIKDSEVANAAES----REPKGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGF--SAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAW----REGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHL 954
            P+ A+NPF+ F L S A  A  P+ V                RRK      +     NAA +    R+P GL E       P  PL+L++VGHNPS  AW  GHYYANPSN M+K+L    + P      A DD K P +CGVGFTDVG  VPGT SS+F+  DL  W      GF+ RL  H   A  T                            P+++ FAGKRQ+  LF               +     G Q     PP WP   EST ++V+PS+SGA+A+T   R  P+ EL  H+
Sbjct:    2 PAPALNPFDAFRLTSAAATATTPSKVPRRXXXXXXXXXXXXXRRKIAPAAARKECATNAAAADEAPRQPAGLPEML-----PAHPLRLVIVGHNPSERAWMDGHYYANPSNHMWKILEETNLAPKNLISGAQDDYKMPALCGVGFTDVGTGVPGTQSSKFSDADLRRWTLDAESGFYARLRRHVSLAGGTP---------------------------PRVLAFAGKRQYTVLF-------------SKKNQVDVGPQSHASLPPDWPL-DESTSVWVMPSTSGASALTREQRYGPWHELASHV 259
[Close]
BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: A0A836CAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH3_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.380e-42
Identity = 113/271 (41.70%), Postives = 144/271 (53.14%), Query Frame = 1 
Query:  271 GLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSC--------------------------------------GYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTE--IFVVPSSSGAAAMTSAARTDPYIELGKHLEEL 963
            GL EK +SPG PEWPL+ + VGHNPS TAW +GH+YA+PSN M++LL  A + P   + +DD++ PI  GVGFTD+G   PGT S+ F +  L  WR G F RL  H RRA        XXXXXXXXXXXXXXXX                                           GYP ++ F GKRQW ELF+    EA+A     +     +G Q +  RPP WPFP       + V+ SSSGA+A+++ AR  PY  L   L ++
Sbjct:   99 GLPEKLRSPGHPEWPLRCVCVGHNPSATAWAKGHFYAHPSNHMWRLLHAAGVSPRPLTCVDDERLPIELGVGFTDLGHDCPGTNSAAFKRDVLRTWRAGLFERLRGHVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLEMEDAAAAPERLGYPHVIAFTGKRQWRELFF-GTPEAEA-----LAKKVDYGLQQA--RPPDWPFPPPPNGPLVVVLASSSGASALSNEARIAPYRLLAGLLRDV 361
[Close]
BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Match: C1MXW2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MXW2_MICPC)

HSP 1 Score: 159 bits (403), Expect = 6.120e-41
Identity = 88/228 (38.60%), Postives = 124/228 (54.39%), Query Frame = 1 
Query:  307 EWPLQLIVVGHNPSNTAWQQGHYYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICG---VGFTDVGFSVPGTVSSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEXXXXXXXXXXXXXXXXGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPSTLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEELGGWNRK 981
            E PL+L+++GHNPS+ +W+ G+ Y+NPSN M+KLL   +IIP   SA   D CP + G   +GFTD G + PG  ++ + +  +  WRE  + RL  H  RA+  A+  E                   +   P +V FAGKRQ+ +LF    K  +             G+QP    PP WPF  ++TE++V+PSSSG AAMT  AR  PY+ELG  L E+  W R+
Sbjct:  172 EVPLKLLIIGHNPSDHSWESGYSYSNPSNNMWKLLVRGEIIP---SAWTSDDCPRLAGELGIGFTDAG-TEPGNDANAYGRAVMKEWREDLYARLRGHLCRASGRAIGGEEGDVADEIDDAAKTWRATAAAFGPSVVAFAGKRQYAQLFDTIPKRVEV------------GKQPPGSLPPRWPFCEDATEVWVLPSSSGRAAMTREARETPYLELGARLAEVE-WPRR 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2346.6333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB7_ECTSI1.110e-10251.21UDG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CYU0_9STRA6.440e-5745.45UDG domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TJD2_9STRA2.720e-5645.89Uracil-dna glycosylase superfamily n=1 Tax=Nannoch... [more]
A0A5J4XIV9_9CHLO4.630e-4840.08DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2... [more]
A0A383VAW5_TETOB4.770e-4641.45UDG domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A482SFZ9_9ARCH3.630e-4548.71UDG domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A150H3T8_GONPE1.960e-4342.42UDG domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A830HJU9_9CHLO3.270e-4236.18UDG domain-containing protein n=1 Tax=Pycnococcus ... [more]
A0A836CAH3_9STRA6.380e-4241.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1MXW2_MICPC6.120e-4138.60Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2346contigH-paniculata_contig2346:7567..13622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue1.3e-84
Seed eggNOG ortholog2880.D7FQB7
KEGG koko:K20813
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
EggNOG OGs2CGCP@1,2RYQ9@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-01_006710.1
EC3.2.2.29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons5
Model size1293
Cds size1038
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.8226285-UTR-H-paniculata_contig2346:7566..76381622929665.8226285-UTR-H-paniculata_contig2346:7566..7638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 7567..7638 +
1691480958.0637996-UTR-H-paniculata_contig2346:7566..76381691480958.0637996-UTR-H-paniculata_contig2346:7566..7638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 7567..7638 +
1622929665.922352-UTR-H-paniculata_contig2346:13439..136221622929665.922352-UTR-H-paniculata_contig2346:13439..13622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 13440..13622 +
1691480958.1221323-UTR-H-paniculata_contig2346:13439..136221691480958.1221323-UTR-H-paniculata_contig2346:13439..13622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 13440..13622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.8368452-CDS-H-paniculata_contig2346:7638..78561622929665.8368452-CDS-H-paniculata_contig2346:7638..7856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 7639..7856 +
1691480958.075718-CDS-H-paniculata_contig2346:7638..78561691480958.075718-CDS-H-paniculata_contig2346:7638..7856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 7639..7856 +
1622929665.8534398-CDS-H-paniculata_contig2346:9172..93801622929665.8534398-CDS-H-paniculata_contig2346:9172..9380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 9173..9380 +
1691480958.0851433-CDS-H-paniculata_contig2346:9172..93801691480958.0851433-CDS-H-paniculata_contig2346:9172..9380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 9173..9380 +
1622929665.8747-CDS-H-paniculata_contig2346:10482..107131622929665.8747-CDS-H-paniculata_contig2346:10482..10713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 10483..10713 +
1691480958.0927293-CDS-H-paniculata_contig2346:10482..107131691480958.0927293-CDS-H-paniculata_contig2346:10482..10713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 10483..10713 +
1622929665.886692-CDS-H-paniculata_contig2346:10959..112281622929665.886692-CDS-H-paniculata_contig2346:10959..11228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 10960..11228 +
1691480958.101273-CDS-H-paniculata_contig2346:10959..112281691480958.101273-CDS-H-paniculata_contig2346:10959..11228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 10960..11228 +
1622929665.905948-CDS-H-paniculata_contig2346:13327..134391622929665.905948-CDS-H-paniculata_contig2346:13327..13439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 13328..13439 +
1691480958.1112397-CDS-H-paniculata_contig2346:13327..134391691480958.1112397-CDS-H-paniculata_contig2346:13327..13439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 13328..13439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2346.6333.1prot_H-paniculata_contig2346.6333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2346 7639..13439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2346.6333.1

>prot_H-paniculata_contig2346.6333.1 ID=prot_H-paniculata_contig2346.6333.1|Name=mRNA_H-paniculata_contig2346.6333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
MRGLPSVMSSPSSAVNPFERFALGSTAVAVAPAAVQLDNERHRRKKRMRT
IKDSEVANAAESREPKGLVEKYKSPGEPEWPLQLIVVGHNPSNTAWQQGH
YYANPSNRMYKLLATAKIIPGGFSAMDDDKCPIICGVGFTDVGFSVPGTV
SSEFAKTDLHAWREGFFNRLEAHARRAAATAVAAEGAIGEKTEATEETES
TGCVSCGYPKIVTFAGKRQWEELFYDACKEAKAQTRGGIRGTFRFGRQPS
TLRPPGWPFPSESTEIFVVPSSSGAAAMTSAARTDPYIELGKHLEELGGW
NRKISYRSMRDLITWRMGHHGPAGAAARGEWGRNIQRSAVNTVQS*
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mRNA from alignment at H-paniculata_contig2346:7567..13622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2346.6333.1 ID=mRNA_H-paniculata_contig2346.6333.1|Name=mRNA_H-paniculata_contig2346.6333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6056bp|location=Sequence derived from alignment at H-paniculata_contig2346:7567..13622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTCGCTGTTGATAGGCATGTTACTCACATAGAGTACAGCACAGGACC
GTCTCTTCACATATAAGCGCTGATGCGTGGGCTTCCAAGCGTCATGTCTT
CGCCGAGTAGTGCTGTAAATCCGTTCGAGAGGTTTGCGCTAGGTTCGACC
GCGGTAGCGGTGGCACCAGCAGCTGTTCAACTAGACAACGAAAGACATCG
CAGGAAGAAAAGGATGCGAACGATCAAGGACAGCGAGGTTGCGAATGCTG
CCGAGTCGAGGGAACCGAAGGGACTCGTTGAGAAATACAAGTGAGAGGAA
GTACTAGTGGTTTACGTGTACTCCTTCAAGCTGTTTCCCGTTGCACAATG
CGGAACCGAATTCCGTACTCTGCGTTTTTGATATGACAATTTACGGTCAC
ACTTAGGTCACATCATGCGCGGATTCATTCGTTCGTGCCAAGAAGGCCAA
CGCCAACGTCAATATCCTGCTCATCCTAGTTTCTTGTTAGCCTGACTGCC
GAAGTGAATGTTTTTTAGCCAAGCTAGAGAGAGACAGGTGTGTAGATATT
ATTTATCTCCTCCAGCCGTCTTACCGTGTTGTCCTGTCCTTACGTAGAAC
GTGAATGTTGAGATGCTGAGTTGCAAAAAACGCGTAGAGAACCCAACGAC
GGATTTGATTTGTTTTTGGTCTAGTTCATCTCTCCGCAGTGACCCAAATG
AAGTTGTTTCGGAACAAAATTGTCATAAGACGAGGCCGGGAGGGGGGGGG
TGCTTTTCGTAAGGGATGGAGGGATACAGGTTCGGTTTCGTGGTGCTAGA
GTACGACCAAGACATTTCAGTTGTGGCATGGGTCATTTCCACTCATAAAA
CGTTTAGTCACCTGAACCTATATAACTAGTTGACTTGTTTCGTTCAACCA
TCGATTGTAGAGTTAAATATCCTGAAGGATCGAACAAGGAAAAAATCCAC
AAGAGCTAACCAATGGCTTGACTGCATGTTCTGTGGGTGTATTGCGTCTA
CCATATTAACCGTGAAGGTGGTGCTTCGTTCGATTGCATGCCCTCCAAAA
AAAAATGCGGTTTGTGTGTCACACACCGCCGCACAGTCAGTCACTCAGTA
GTTTGAGTGTTATGTTCCTATCAAGAACTGCAGTCGTCGTGATGCGCACA
ACAATGCCAGTTCCTGTAATTTATTATTCATACTGTATACGACTGTCTGA
GAAGCAGCAGCACCTTTTTCCGTGTAGACATGTGATGCGCGTTATAGGAA
ACGTTCTGAGCTGTTTTTGTCCATTTTTCCATGTGAGGAATTGATCGGGA
TCGGCACTCCCAGGGGGTTAAAATATAATCTCCATCTCTGCTGCGTATTA
TGAGAACGCCTTGTCTATACAACTCCCCACAGTTATTGTGGACCTTAAAC
ACGAGGACATTCTGAGGATGCATGTCAAGGAAGGTATCCCAAATGCCTGT
TGTTTTTATCAAAGATTAGAGCACTATACTCTTACACGATAGTCAAGTGT
GACATGCACAATCAGCCGTTACACCCAACATCCAACCCTCGGTCATGAAC
CAAATTCATCGCCCGACCCCTCGCCTCCTATCGGTTGTTGTCAATGTATC
ACAAAGGTCTCCTGGCGAACCCGAGTGGCCACTGCAATTGATTGTTGTCG
GACATAACCCAAGCAACACGGCCTGGCAACAGGGACATTATTACGCCAAC
CCGTCGAACAGGATGTACAAACTGCTCGCGACTGCCAAGATAATCCCTGG
TGGTTTTAGTGCAATGGACGACGACAAATGTCCAATAATTTGTGGCGTTG
GATTCACAGACGTGGTGAGTAGTGCACTTACTGCACGTATAGCCGATAAT
GAGACATGCACGAAATATTGGGCTAATAATGTTTAGTGCGCCACGGTTAT
GTATTCAGAAATATTCAGCTGACAGTCCCGGCGTTTGAGGTGTGAGGGGG
AGCTAGGGCTATAACGCGCGTATAATGACTCCATCGTACCCAGTTGTGTG
TACTTATCAGCAAAATTAGATCAACAAGGGGGAGTCATTCGTAAGAGTGA
AAGGGTTCTCTAGCTCGGTGAAAATTATAAATTGTCATAGACTGTGCGTG
GCATCCACTTAGGATCCCCAAGTGACGGCAAATGTTTTCGTGGATCGTTC
TGTTGTGTCGAAAAACAACGCTAACCAATTGCGCTCGCCCAGACACGGAC
TGCGGCGTGTGATTTTGGCACCGGGCTGCTGTGCAGAACAGGGCATGGTG
GCATGGTTTGACGGGTTCCCCGAAAATACCATTTCTTCCTGTCGTGCAGT
CAGAAGACGAGGCAGCTAGATGATGGGCAAGGGCAATTCACCTCTCTTTC
TCTCTCTCTCTCTCTCATGGTATAAACTGTCCTTAGTAGGCATATTCTGT
CCTCCCTGTGATACAATACAACTTGATTGCCTGATGGACAAGACAGTGAG
CAGCTTGCCACATTTGCTACTAATTTTATCGCGATCGAAGGTTATAGTGG
CTGCTCTCCACACGTGATGGCAACAGCAACGGCCGGCTTGTGTATGTTGC
GTAAGTGCACAGGGAGGAGTATCACGCTATATAAACCTAGCACCAGGACC
CGTCTACCCCATTCCCGGTTGATGTACGCAAACGATGCTCTTCCGGCGCA
CTTTTTCGAATGAGGATTTTTGTTGCCCATTTGGAGGGCAATGGCGCTCT
ACGTGTTAAAATAGGGAGTTTGCTTCTAGGTATACACATGGTTTTCTTAT
CCAGCGGAAATCTCTACCAGTTAATGTCCTTTTCCGTACACATCCACTGT
CTACTCTAGAAGGCAGAAGTGACGCTTGCCTCCAAGGACGGATCGCACAT
GATCCAGTCGCGAAGGCATTCAAAACCTAGAATGTTCTCCTTGAACTGTG
TTCCCCCCTTCACCAGGGTTTTTCAGTCCCCGGAACCGTGTCCAGCGAGT
TCGCGAAGACTGACCTGCACGCCTGGAGGGAAGGATTTTTCAACCGTTTA
GAGGCGCACGCGAGGCGAGCAGCGGCTACAGCAGTGGCGGCAGAGGGCGC
GATAGGAGAAAAAACAGAGGCGACGGAGGAGACTGAAAGCACTGGATGCG
TTAGTTGTGGATACCCCAAAATTGTGACCTTTGCGGGAAAACGACAGGTG
AGGCTGCGAACGGCTGTTGCTTCTGTTTTGCGCAAGCCAGATGATGCTCG
CTTTTTTTATGCTCACTTTCCCACTCGTTTCCGTGGGTATTTGGACGTCT
CCCAATGGAACCACTGCAACAGTCTGACACGTAAGCCTTTTGTCATCTGC
TACGACTATCCACACCATCATTGCCCGTCTTTGTGTCTAGCACACTTGTT
CCGCATTTCGTGACACCCCCTCCCCCCCCCCCCTAATAAACAGTGGGAGG
AGCTATTTTACGACGCTTGCAAGGAGGCTAAGGCGCAGACAAGAGGAGGC
ATCAGGGGAACGTTTCGTTTTGGGCGGCAGCCATCAACGCTCCGACCCCC
CGGTTGGCCGTTCCCTTCTGAGTCCACGGAGATTTTCGTCGTGCCTAGCA
GCAGCGGGGCGGCAGCAATGACGTCGGCTGCCCGTACGGATCCCTATATT
GAGCTGGGCAAGCATCTCGAGGAGCTGGGCGGATGGAACCGCAAAATCAG
TTACCGCAGTATGTCAGTTGACACGTGAAGCCTGAGCTCGACTGTACCGG
CGGGGAATTAGTACAAGCACATATGCTGCTGTATATTACCAGTGTAAACG
GCCGGTGTTGATAACAAATTTGTAGTCGAGTCCAGAGTATGTGATACGTA
TGTTCCTTACACAAGTGGGTCTGGGGTGGGCGAAGTTGCGCGGTTGGCCG
ACCAGATCGTTATTTTTGCCTACAGGGGATCGCGAAAGTGCACTCGGAAG
AAAATGAATTTCTATGCGCCGTCACTTGTAATATATTGTCAATTGCGCCA
TACGCAGTCAGGGGTGTGCAGTACAATGATGTAGTGGAATAGCCTGTTAC
CAACCATGTAGCTTAAGTACAGCATAGCTATTCGGCAGAGTTGGGGTAGA
CTTCGATACTCACGGGGCTCAAACGGGGTTATGTAATATAATCTTACACT
GTAATGAGCCTAAACTAGAATGGAGGGCACTTAGTTTTGGAGACACAATA
TGTTTGTTTGGCCATGGGAGAAACGGGTTTCAGCGTTACCCTTCGGGTAG
ACAATTGAACTACTCTCGGGCAAAGGAGGGAAGTCATAATTCTTAATCCA
GCTCTGTACGAGGAAATAATGCTGTTTTTTTCCTATGCCTATCCAGTATT
TGAGCAGCGGACAGGAAAGGGTATATATACCCTGTTCGTTTTGGATAGCT
ATCGGAAAAGTGGCACACAAACACATCGAACATCTGGAAACCACGAAATT
GACAGCTACGCAGAAGACCGATTATCCTGTCTGAACGTTTGCTCGATGGT
TACTTCTAGTTTATTCGGCGTGGGAAACATGTCGTCACAGCCTAAATGAA
CCTCTGTGTTACCTGCCGCCACCGTCGGACAGCAAACTATGGCTGGCTTG
CAGTTAGCGCAACATCTCGACTATCAATGTTGTGCCGTGGAATGTGCCAG
GTCGTAGTAGGAGTGGATGTCAATAATGGGACCAGTGAAAGTAGTGGGCG
AGAACGTGTTGATGTTAGATGATGTTCGCAAGTATGCCACCAAAGATACT
CATGTCTGACGCACATATTTGTTGTCGATCGCTAGCGTCAACGACCAATT
TGTTGCTAACTACCACAGTATAGACATCGATCGGCCGACTTTGACAGAGG
TCACTGCAGTAGAGAGCAGTGGGCAGAAACTCGTACGAAATTTGACATTT
TCGGCAAAAAATGGACAAGAAAAGGTGACGTCTTTCACAAGTAGAATCGA
ATGAGTTCGCGTCCCGTGCTGTGACCACTTATGGCACAGAAGGCCCTCCT
TCGGAATACATCATACTGTGTGGCAGTGCTTCGCCTGATCTCTCTTATTT
CTCGTATTTCATGGGCGTTTAGAAGAGAAGCATCAATTGGTCTACAGTGA
CAACGCGACAGAGTTCTTGGCATTCAAGCGCCGGCTACACATGCCATGTG
TTGCTGTACCGGGAAGTGTCCAAAATGGAAAGAGGTGTGCCCTCTCCTGT
CCCTTAACCTTAGTTGTATGCCCTACAGAGGGGAGGAGCCCCCTATAATC
CTGAACACATCTGAAAAAAAGTACACACTCGAGACAACACGGCTACTCTC
ATTCCTCCAGCCGACCTGTTGTCTCCCGAGGACCCAACAAACTGCAACGT
AAGATCACGAAGTCTATGAGCATGAATCAGTCTTGCCCTGCAGCAAGCAA
ATTTACGATGTCGGAGGGACTGCACCAAAGTATAACCTACAGTCAAAACT
AGTCAAAATTGGAGGCAACCACCTCATTGTCCTACTATCAAAATGGTGGC
CATATAGCGCGCCTACTCCAGCATGCCCGTCAGTCTCTGCAACAGAAGGA
AAGAAACACTCATTGATCTAATTTTGCTCCCCCTGAGGTTGTCGGTCGGT
GTTGTCTCGATTAGTTCAAGAATTTCATTACTTCCTCGTACACTACGAAA
GTGATGGCAGAGGCCGGGGCTGCCCTCACGGCGTAAGGCACGCAGCCCTT
GAAAAATCCGCGCATGCCTTCCCTTCGAGCGATAGTTGTCGCGCAATGTA
TGACCCCGCGATAGCGAGAGACGCTTGTTCTTATCTCACTTTGTGTTCCC
CGCTGTTGCAGGCGAGATTTGATAACCTGGCGGATGGGTCACCACGGGCC
GGCGGGCGCAGCGGCAAGGGGGGAATGGGGGCGAAACATTCAACGCTCAG
CAGTGAACACTGTTCAATCGTAGACACACCGAGTGTGTCTTTTACTACAA
CGACTACTTTTGTAGAAGAAGGGGGACGGGGCAACAGCAAAAGCTGAAGT
GGAGTCGTTCACAGAGCCTGAGGCACGTGTGTAACAGCGCATTTAGGTCA
AATGGATGAAAACACTTTGTGGCGGTGTTCTCGCAGCCACGGACACAATG
CCTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig2346:7567..13622+

>mRNA_H-paniculata_contig2346.6333.1 ID=mRNA_H-paniculata_contig2346.6333.1|Name=mRNA_H-paniculata_contig2346.6333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig2346:7567..13622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGGGCTTCCAAGCGTCATGTCTTCGCCGAGTAGTGCTGTAAATCC
GTTCGAGAGGTTTGCGCTAGGTTCGACCGCGGTAGCGGTGGCACCAGCAG
CTGTTCAACTAGACAACGAAAGACATCGCAGGAAGAAAAGGATGCGAACG
ATCAAGGACAGCGAGGTTGCGAATGCTGCCGAGTCGAGGGAACCGAAGGG
ACTCGTTGAGAAATACAAATGCGTGGGCTTCCAAGCGTCATGTCTTCGCC
GAGTAGTGCTGTAAATCCGTTCGAGAGGTTTGCGCTAGGTTCGACCGCGG
TAGCGGTGGCACCAGCAGCTGTTCAACTAGACAACGAAAGACATCGCAGG
AAGAAAAGGATGCGAACGATCAAGGACAGCGAGGTTGCGAATGCTGCCGA
GTCGAGGGAACCGAAGGGACTCGTTGAGAAATACAAGTCTCCTGGCGAAC
CCGAGTGGCCACTGCAATTGATTGTTGTCGGACATAACCCAAGCAACACG
GCCTGGCAACAGGGACATTATTACGCCAACCCGTCGAACAGGATGTACAA
ACTGCTCGCGACTGCCAAGATAATCCCTGGTGGTTTTAGTGCAATGGACG
ACGACAAATGTCCAATAATTTGTGGCGTTGGATTCACAGACGTGGTCTCC
TGGCGAACCCGAGTGGCCACTGCAATTGATTGTTGTCGGACATAACCCAA
GCAACACGGCCTGGCAACAGGGACATTATTACGCCAACCCGTCGAACAGG
ATGTACAAACTGCTCGCGACTGCCAAGATAATCCCTGGTGGTTTTAGTGC
AATGGACGACGACAAATGTCCAATAATTTGTGGCGTTGGATTCACAGACG
TGGGTTTTTCAGTCCCCGGAACCGTGTCCAGCGAGTTCGCGAAGACTGAC
CTGCACGCCTGGAGGGAAGGATTTTTCAACCGTTTAGAGGCGCACGCGAG
GCGAGCAGCGGCTACAGCAGTGGCGGCAGAGGGCGCGATAGGAGAAAAAA
CAGAGGCGACGGAGGAGACTGAAAGCACTGGATGCGTTAGTTGTGGATAC
CCCAAAATTGTGACCTTTGCGGGAAAACGACAGGGTTTTTCAGTCCCCGG
AACCGTGTCCAGCGAGTTCGCGAAGACTGACCTGCACGCCTGGAGGGAAG
GATTTTTCAACCGTTTAGAGGCGCACGCGAGGCGAGCAGCGGCTACAGCA
GTGGCGGCAGAGGGCGCGATAGGAGAAAAAACAGAGGCGACGGAGGAGAC
TGAAAGCACTGGATGCGTTAGTTGTGGATACCCCAAAATTGTGACCTTTG
CGGGAAAACGACAGTGGGAGGAGCTATTTTACGACGCTTGCAAGGAGGCT
AAGGCGCAGACAAGAGGAGGCATCAGGGGAACGTTTCGTTTTGGGCGGCA
GCCATCAACGCTCCGACCCCCCGGTTGGCCGTTCCCTTCTGAGTCCACGG
AGATTTTCGTCGTGCCTAGCAGCAGCGGGGCGGCAGCAATGACGTCGGCT
GCCCGTACGGATCCCTATATTGAGCTGGGCAAGCATCTCGAGGAGCTGGG
CGGATGGAACCGCAAAATCAGTTACCGCAGTATTGGGAGGAGCTATTTTA
CGACGCTTGCAAGGAGGCTAAGGCGCAGACAAGAGGAGGCATCAGGGGAA
CGTTTCGTTTTGGGCGGCAGCCATCAACGCTCCGACCCCCCGGTTGGCCG
TTCCCTTCTGAGTCCACGGAGATTTTCGTCGTGCCTAGCAGCAGCGGGGC
GGCAGCAATGACGTCGGCTGCCCGTACGGATCCCTATATTGAGCTGGGCA
AGCATCTCGAGGAGCTGGGCGGATGGAACCGCAAAATCAGTTACCGCAGT
ATGCGAGATTTGATAACCTGGCGGATGGGTCACCACGGGCCGGCGGGCGC
AGCGGCAAGGGGGGAATGGGGGCGAAACATTCAACGCTCAGCAGTGAACA
CTGTTCAATCGTAGGCGAGATTTGATAACCTGGCGGATGGGTCACCACGG
GCCGGCGGGCGCAGCGGCAAGGGGGGAATGGGGGCGAAACATTCAACGCT
CAGCAGTGAACACTGTTCAATCGTAG
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