mRNA_H-paniculata_contig2340.6319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2340.6319.1
Unique NamemRNA_H-paniculata_contig2340.6319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 2.430e-72
Identity = 302/774 (39.02%), Postives = 367/774 (47.42%), Query Frame = 3 
Query:  135 FPKEATCDVECAMKVESLRILSKKRKQSQRTEPTTGNNGPPAS------SGKGVKRALPVAGDPGRGNNSSRP---------------------------PGCKSSSGSTPNHTKLHSGGSSPGXXXSKES-QRRRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKVGCGASCACEGGAQMASDGGIDEKAPIPGSSPNVGAIRRGPNGESCDSKGLPKWTVKTASGECDHGDKGGQGSMGVAVGSQ----GKSTRVGIAGDITPGHVPPGAGALPVVTSVLLQSHLELLAKGIDIQIQFHDHLREVVNSQKALQAQLLGQSGNCSGVPLHPG--------------------------------GFASPTLAATAGIVRGVMQNQHVDLAEGRGNALHNLQRGLLMMNGVTAGESVLPAPVTRRDTSVEGMVTAG-----ITVQESPVQGGLTGETAGDT--RRGRNGSDIHVASTK-----PAVVAVTTSPQVSAHAHPTHNACVHQSTAGKNQREGSSMANSLSRFSLAAIRAAVSVRPDVGGNSPRSAPPSLSVMADIGR---RAYVPGDYTLKNKSAEVGG-------VQDRRAEEGSLEVGGAGEGEVGGKGGDAPRCDQVEARISAHGNDL--VEPALAVADGQDPRMLQRCMQAQMEMQRAMLEACVDQATLFKTQRTWGG 2174
             PKEATCDVECAMKVE +RI+SKKRKQSQR     G NG  AS      S K  KR L  +   G G  S++                                                    XXXSK +  RRRF WS PLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY YLTDLDGGK LGXXXXXXXXXXXXXXXXXXXXX              +   CG+SC C   ++++   GI       G   N  A   G  GE+  SK        T   +   GD+G +GS G A  S     G +  VG A  +    +P  A A  VV   LL SHLELLAKGID+Q++FH+HLREVV SQ+ LQAQL+ Q G    VP HP                                 GF  P+    AG + G   N  V         +H      L+  G  +G S         D+S   +V +G     +       + G  G  A +   RR R G   H  +++      A V++ ++   ++ A P  +   H    G  +R G        +F  AA+R A SV+   G     S    LS     G    R Y+ GDYTL  K+ E GG        + + A  G+  +  AGEG +G            EAR++     L  V      ++GQ+   LQR MQAQM MQ++ML AC DQAT F  QR W G
Sbjct:    1 MPKEATCDVECAMKVEEIRIMSKKRKQSQRVG---GGNGALASEEGANISAKAAKRPLSNSNGCGAGTQSAKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGXXXXXXXXXXXXXXXXXXXXXDDVKDFSPGRGRDAETPECGSSCDCVDTSKLSGGSGI-------GGGSNSLAETDG-RGEAARSKST------TGFAQAASGDEGAKGSGGGAKASAQLAGGGTEAVGGAQRL---QLPGEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGR-EHVPQHPAEFSGXXXXXXXXXXXXXXXXXXXXXXXAASAVGFCPPSDLQYAGSIVGAEGNIRVP------KEVH------LVGGGCGSGVSTAGYSSNLSDSS--SLVWSGGGEDKLAGSPKEAEQGGRGAAAAERPRRRERPGVLNHAGASQLEGAAAADVSMDSARAAASKARP--SVADHMRGDGTGERLGDGQQQQ--QFDPAAMREAFSVQAVAGRVVAPSHSQGLSGRQGAGLAPPRGYMAGDYTLTPKAPEDGGSGRLAPHARGQPAVLGAELL--AGEGALGAHKSIFAARSPAEARVALASATLAPVTSTGNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFG-QRGWCG 732
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 2.500e-48
Identity = 255/762 (33.46%), Postives = 307/762 (40.29%), Query Frame = 3 
Query:   99 MTRANGEPSSLRFPKEATCDVECAMKVESLRILSKKRKQSQRTEPTTGNNGPPASSGKGVKRALPVAGDPGRGNNSSRPPGCKSSSGSTPNHTKLHSGGSSPGXXXSKE--------------SQRRRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKVGCGASCACEGGAQMASDGGIDEKAPIPGSSPNVGAIRRGPNGESCDSKGLPKWTVKTASGECDHGDKGGQGSMGVAVGSQ----GKSTRVGIAGDITPGHVPPGAGALPVVTSVLLQSHLELLAKGIDIQIQFHDHLREVVNSQKALQAQLLGQSGNCSGVPLHPGGFASPTLA---------------------ATAGIVRGVMQNQHVDLAEGRGNALHNLQRGL---LMMNGVTAGESVLPAPVTRRDTSVEGMVTAGITVQESPV-------QGGLTGETAGDTRRGRNGSDIHV--ASTKPAVVAVTTSPQVSAHAHPTHNACVHQSTAGKNQREGSSMANSLSRFSLAAIRAAVSVRPDVGGNSPRSAPPSLSVMADIGRRA---YVPGDYTLKNKSAEVGGVQDRRAEE--GSLEVGGA----GEGEVGGKGGDAPRCDQVEARISAHGNDLVEPALA-------VADGQDPRMLQRCMQAQMEMQRAMLEACVDQATLFKTQRTWGGQSG 2183
            M +A GE SSLR PKEATCDVECAMKVE +RI+SKKRKQSQR                                    P      S                 XXX                 + RRRF WS PLHQDFVAAVFD+GLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R                L D   G+G                                     +  GCG+SC C   + ++   G+                    +GE+  SK        T   +  + D+G +GS G A  S     G +  VG A  +      PG  A  VV   LL SHLELLAKGID+Q++FH+HLREVV SQ+ LQAQL+ Q G    +P HP  F+                           TA  V GV     +  A     A  N +      L+  G  +G S      T  D+S       G   ++ P        QGG     A   RR      ++   AS   A  A   S   +          V     G    E    A    +F  AA+R A SV+   G   P S    LS     G  A   YVPGDYTL  K+ + GG   R A +  G   V GA    GEG +G            EAR +     L   ALA        ++GQ+   LQR MQAQM MQ++ML AC DQAT F  +R W G  G
Sbjct:    1 MKKAKGE-SSLRMPKEATCDVECAMKVEEIRIMSKKRKQSQRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPADQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPRX--AAXXXXXXXXXXDLKDFSPGRG----------------------------------RDAETPGCGSSCDCVDTSNLSGGSGVXXX--------XXXXXXXXGSGEAARSKST------TGFAQTANRDEGAEGSGGGAKASAQLAGGGTEAVGGAQRLQ----LPGEAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGT-EHLPKHPAEFSGXXXXXXXXXXXXRAFPXXXXXXXXXTTASAV-GVCPPSDLQYAGSNVGAEANNRAPKEVHLVGGGCGSGVSTAGCSSTLSDSSSLVWSRGG---EDRPAGSPKEAEQGGKDAAPAERPRRRERPCALNYEGASQLEAAAAADVSMDAARATASKARQSVADHIRGDGTGEHLGDAQQQQQFDPAAMREAFSVQAGAGRVGP-SHSQGLSGRQGAGLAAPQRYVPGDYTLTPKAPKNGGA-GRVAPQPRGQPAVLGAELLGGEGALGAHKAIFAARSPAEARAA-----LAAAALAPVTSTDNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFD-RRGWCGGGG 694
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.570e-20
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 3 
Query:  432 RRRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYG 638
            R+RF W + LH+DFVAA+FD+GLKCASPK +LEMM     LT +HIKSHLQKYRLHR+R+REEFL+ +G
Sbjct:   76 RKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFG 144
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.250e-20
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:  432 RRRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLDGGKGLG 674
            ++RF W + LH+DFVAA+FD+GLKCASPK ++EMM     LT +HIKSHLQKYRLHR+R+REEFL+ +G    + G  G G
Sbjct:   55 KKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVAGAAGTG 135
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.610e-20
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:  438 RFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 635
            RF W + LH  FV A+FD+GLK ASP++LL+MMP   GLT+EH+KSHLQK+RLHR +SREEFL  +
Sbjct:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKH 66
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.140e-17
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 3 
Query:  435 RRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 635
            RRFAW + LH+DFV+AVFD+GLK +SP  LLE MP  + +TSE IKSHLQKYRLHRQ+S++EF+ SY
Sbjct:  158 RRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSY 224
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BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.710e-17
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3 
Query:  390 GGSSPGXXXSKESQRR---RFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 635
            GGSS     +K++  R   RF W + LH+DFVAA+FD+GLK +SP  +LE MP  + +TSE +KSHLQKYR+HR +S++EF+ SY
Sbjct:   66 GGSSKARRKAKDTDPRWSKRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSY 150
[Close]
BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.080e-15
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 3 
Query:  435 RRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 635
            +RF W E LH+DFV+A+FD+GLK +SP  LLE MP  + +T+E IKSHLQKYRLHR +S++EF+ +Y
Sbjct:  193 KRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTY 259
[Close]
BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: K3X7I1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7I1_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-15
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 3 
Query:  387 SGGSSPGXXXSKESQRR--RFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVV---DGLTSEHIKSHLQKYRLHRQRSREEFLKSYGY 641
            SGG +P     ++ +R+  RF W + LH+ FVAA+FD+GLK ASPK LL +M V     GLT+EH+KSHLQKYRL+ +RSR EFL+ Y +
Sbjct:   75 SGGGTPNAARQRKYERKTKRFIWPDELHRLFVAAIFDVGLKNASPKALLGLMGVAGPDSGLTTEHLKSHLQKYRLNYERSRAEFLEFYDH 164
[Close]
BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Match: A0A7S2KY53_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KY53_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.260e-15
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:  435 RRFAWSEPLHQDFVAAVFDIGLKCASPKLLLEMMPVV--DGLTSEHIKSHLQKYRLHRQRSREEFLKSY 635
            +RFAW +  H+DFV+AVFD+GLK +SP  LLE M     + +TSE +KSHLQKYR+HR +S++EF+ SY
Sbjct:   49 KRFAWPDEAHRDFVSAVFDVGLKQSSPAALLEQMGSNKNEAITSERVKSHLQKYRIHRAKSKQEFMTSY 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2340.6319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE9_ECTSI2.430e-7239.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUD1_9PHAE2.500e-4833.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S6I5N2_9STRA4.570e-2068.12Phosphorus starvation response 1 n=1 Tax=Nannochlo... [more]
W7U4E9_9STRA5.250e-2059.26Two-component response regulator arr12 n=2 Tax=Mon... [more]
A0A835YR85_9STRA5.610e-2063.64Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3QDX4_9STRA1.140e-1767.16Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3LD31_9STRA1.710e-1752.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2YNK9_9STRA2.080e-1559.70Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
K3X7I1_GLOUD2.310e-1553.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2KY53_9STRA4.260e-1556.52Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2340contigH-paniculata_contig2340:7362..10255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog65071.PYU1_T013180
Preferred namePCL1
Hectar predicted targeting categoryother localisation
GOsGO:0000156,GO:0000160,GO:0001101,GO:0001763,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007623,GO:0008150,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009723,GO:0009725,GO:0009735,GO:0009736,GO:0009755,GO:0009873,GO:0009888,GO:0009889,GO:0009909,GO:0009933,GO:0009966,GO:0009987,GO:0010014,GO:0010015,GO:0010016,GO:0010033,GO:0010035,GO:0010073,GO:0010074,GO:0010075,GO:0010082,GO:0010119,GO:0010150,GO:0010223,GO:0010346,GO:0010380,GO:0010468,GO:0010492,GO:0010556,GO:0010646,GO:0019219,GO:0019222,GO:0019827,GO:0022622,GO:0023051,GO:0023052,GO:0031323,GO:0031326,GO:0031537,GO:0032501,GO:0032502,GO:0032870,GO:0035556,GO:0040008,GO:0042221,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048532,GO:0048580,GO:0048583,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051193,GO:0051239,GO:0051252,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071368,GO:0071369,GO:0071495,GO:0080022,GO:0080036,GO:0080050,GO:0080090,GO:0080113,GO:0090056,GO:0090506,GO:0090693,GO:0098727,GO:0099402,GO:0140110,GO:1901401,GO:1901463,GO:1901700,GO:1903506,GO:1905392,GO:1905393,GO:2000026,GO:2000112,GO:2000241,GO:2000280,GO:2001141
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGs1MGPT@121069,2C4RN@1,2RIEW@2759
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-12_002320.1
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size2280
Cds size2223
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2340.6319.1prot_H-paniculata_contig2340.6319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2340 7418..10255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.9850826-UTR-H-paniculata_contig2340:7361..74171622929663.9850826-UTR-H-paniculata_contig2340:7361..7417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2340 7362..7417 +
1691480957.232032-UTR-H-paniculata_contig2340:7361..74171691480957.232032-UTR-H-paniculata_contig2340:7361..7417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2340 7362..7417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.0101469-CDS-H-paniculata_contig2340:7417..74801622929664.0101469-CDS-H-paniculata_contig2340:7417..7480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2340 7418..7480 +
1691480957.2416794-CDS-H-paniculata_contig2340:7417..74801691480957.2416794-CDS-H-paniculata_contig2340:7417..7480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2340 7418..7480 +
1622929664.0228214-CDS-H-paniculata_contig2340:8095..102551622929664.0228214-CDS-H-paniculata_contig2340:8095..10255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2340 8096..10255 +
1691480957.2491698-CDS-H-paniculata_contig2340:8095..102551691480957.2491698-CDS-H-paniculata_contig2340:8095..10255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2340 8096..10255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2340.6319.1

>prot_H-paniculata_contig2340.6319.1 ID=prot_H-paniculata_contig2340.6319.1|Name=mRNA_H-paniculata_contig2340.6319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=741bp
MASLGQVTPEGCAMMTRANGEPSSLRFPKEATCDVECAMKVESLRILSKK
RKQSQRTEPTTGNNGPPASSGKGVKRALPVAGDPGRGNNSSRPPGCKSSS
GSTPNHTKLHSGGSSPGGSSSKESQRRRFAWSEPLHQDFVAAVFDIGLKC
ASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYGYLTDLD
GGKGLGGGSAVAAIKAAAAAAGDLSGSVDVKGAVPCSAAVPDKVGCGASC
ACEGGAQMASDGGIDEKAPIPGSSPNVGAIRRGPNGESCDSKGLPKWTVK
TASGECDHGDKGGQGSMGVAVGSQGKSTRVGIAGDITPGHVPPGAGALPV
VTSVLLQSHLELLAKGIDIQIQFHDHLREVVNSQKALQAQLLGQSGNCSG
VPLHPGGFASPTLAATAGIVRGVMQNQHVDLAEGRGNALHNLQRGLLMMN
GVTAGESVLPAPVTRRDTSVEGMVTAGITVQESPVQGGLTGETAGDTRRG
RNGSDIHVASTKPAVVAVTTSPQVSAHAHPTHNACVHQSTAGKNQREGSS
MANSLSRFSLAAIRAAVSVRPDVGGNSPRSAPPSLSVMADIGRRAYVPGD
YTLKNKSAEVGGVQDRRAEEGSLEVGGAGEGEVGGKGGDAPRCDQVEARI
SAHGNDLVEPALAVADGQDPRMLQRCMQAQMEMQRAMLEACVDQATLFKT
QRTWGGQSGVVPVQAGALAKGGAAGSSAQGSGEGGDGGGRI
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mRNA from alignment at H-paniculata_contig2340:7362..10255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2340.6319.1 ID=mRNA_H-paniculata_contig2340.6319.1|Name=mRNA_H-paniculata_contig2340.6319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2894bp|location=Sequence derived from alignment at H-paniculata_contig2340:7362..10255+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGATGTTCAGCAGTTGATGACGGAATTCCGATGACACGTGCAGTTCT
AGTTGAATGGCAAGCCTGGGTCAAGTAACACCCGAGGGATGCGCGATGAT
GACCAGAGCTAATGGGGAGGTGAGCTCCATGTAAATGCCCTTTACCCGTC
AGGGATGGGGAATTGAGATCTGTTTTGACTGAGAGCAGGGCAATTGCTGC
GATTTGCGTCATCTTTCGTACCCTTGCCATCACCAGCGACACTAGTTTAG
TAGTACAACTTGAGAGCAACTCATGCTTGGTACCGGTTCTCAAAAGAGTA
GAGCAGTGCTAGCAGTGTTGATAGACATCAGTATACATGATGCCCCAAGA
TGGGCGTTTTCTGCTATGTCCAATTGAGGTCATGTTTGTGGTTGGGGGCG
AATATCTCTCTGCTCATGTATTGGGAATATGATGTTGCTAATCGCTCTTC
TATCTTGCAGGAGTTTGTGAAGTTTCCTCTTGAGATGCTACGCCTACTCA
GTGGTGATACACGTTTTGGAAGATTTATGTTGGAGAAAAATTGTTCTCCC
CACGAGGTCACTTCAAGTCAACTATAAATGGACAAGTCAATACAGTAATA
CTATCATATGTCCTGTTCCAGCGGTGTTGCCACAGGCAGTGCTTGACCTT
GATCGTCCTTGGCTCATTTTGCATCAGATTTGTAAGTTCGCACCTGTCGC
TGTCCGCTGTTTGTTAACTCATTGATTTGTGCAGCCGTCGTCTCTTCGCT
TCCCTAAGGAGGCGACATGTGACGTGGAGTGCGCCATGAAAGTAGAGTCC
CTTCGCATTCTTAGCAAAAAGCGCAAACAGTCACAAAGAACTGAACCCAC
TACGGGGAACAACGGCCCGCCAGCCAGCAGCGGGAAAGGCGTCAAACGCG
CGTTGCCAGTCGCCGGAGACCCAGGCAGGGGCAACAATTCGAGCCGCCCA
CCAGGTTGCAAATCGTCGTCAGGCTCGACTCCAAACCATACCAAGTTGCA
TTCAGGGGGGTCATCGCCTGGAGGGTCATCTAGCAAGGAGTCTCAGCGGC
GTCGATTTGCCTGGTCGGAGCCCCTGCACCAAGACTTTGTTGCGGCCGTG
TTCGACATCGGGCTAAAGTGCGCCTCACCCAAGCTCCTTCTAGAAATGAT
GCCCGTGGTGGATGGGCTTACCTCAGAGCACATCAAGAGTCACTTGCAGA
AGTACCGGTTGCATCGACAGCGTTCACGGGAGGAGTTCTTGAAGAGCTAT
GGGTACTTGACGGACCTCGACGGGGGCAAGGGGCTTGGAGGGGGGTCGGC
CGTAGCTGCTATCAAGGCGGCGGCTGCCGCTGCGGGAGACTTGAGCGGCT
CAGTGGATGTTAAGGGAGCAGTCCCCTGTTCCGCAGCGGTACCGGACAAG
GTAGGCTGCGGAGCGAGCTGCGCCTGCGAAGGAGGTGCGCAAATGGCGTC
GGATGGTGGGATTGACGAGAAGGCACCGATCCCCGGGAGTTCTCCTAACG
TTGGTGCGATTAGGCGAGGGCCCAATGGTGAGAGTTGTGATTCCAAGGGC
CTGCCCAAGTGGACCGTCAAAACGGCTTCCGGTGAGTGTGACCACGGTGA
CAAGGGTGGCCAAGGCAGCATGGGCGTTGCGGTGGGCAGTCAAGGTAAAT
CGACTAGGGTGGGAATTGCCGGGGATATAACACCGGGCCACGTACCACCA
GGTGCTGGTGCCTTGCCAGTGGTGACGAGTGTGCTACTGCAATCGCATCT
CGAACTCTTGGCCAAGGGCATCGATATACAGATACAGTTTCATGATCACC
TGAGGGAGGTGGTCAACAGCCAGAAGGCACTACAGGCACAGTTGCTTGGG
CAGTCTGGAAACTGTAGCGGTGTGCCGCTTCATCCTGGAGGTTTCGCAAG
TCCAACTCTCGCTGCCACTGCAGGTATCGTCCGTGGGGTGATGCAGAACC
AACACGTGGATCTAGCCGAAGGTCGAGGGAATGCGCTTCATAATTTGCAG
CGGGGATTGTTGATGATGAACGGCGTGACCGCAGGTGAGAGTGTCTTGCC
CGCTCCTGTCACCAGACGAGATACATCTGTCGAAGGTATGGTAACGGCGG
GCATTACAGTACAAGAATCACCGGTGCAGGGCGGTTTGACAGGAGAAACT
GCGGGCGATACTCGGCGAGGACGGAACGGTAGCGACATTCATGTGGCAAG
CACGAAACCGGCGGTGGTCGCCGTGACTACTTCACCTCAAGTGTCCGCTC
ATGCTCATCCCACACATAATGCCTGCGTGCATCAGTCAACGGCCGGCAAG
AACCAGCGTGAGGGGAGCAGCATGGCTAATTCTTTGTCGCGCTTTAGTCT
GGCAGCTATCCGGGCTGCAGTGTCGGTTCGTCCGGATGTAGGTGGAAATT
CGCCGAGGTCCGCGCCTCCAAGCCTGTCAGTGATGGCAGATATTGGACGG
CGGGCTTACGTCCCAGGTGATTACACACTCAAAAACAAGAGCGCGGAGGT
GGGAGGGGTACAAGATAGGCGTGCAGAAGAAGGTTCGTTAGAAGTAGGTG
GGGCAGGCGAGGGAGAAGTAGGGGGCAAAGGTGGTGACGCACCAAGGTGC
GATCAGGTCGAGGCACGCATCAGTGCGCACGGTAACGATCTTGTGGAGCC
GGCGTTGGCGGTTGCCGATGGGCAGGATCCGCGCATGCTTCAGCGCTGCA
TGCAGGCACAGATGGAGATGCAGAGAGCAATGTTGGAGGCGTGCGTGGAT
CAGGCGACACTATTCAAGACACAACGGACGTGGGGCGGGCAATCGGGGGT
TGTTCCTGTCCAGGCGGGAGCGTTGGCGAAAGGCGGTGCAGCGGGCTCTA
GTGCACAAGGCAGTGGGGAGGGTGGGGATGGAGGTGGCAGGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig2340:7362..10255+

>mRNA_H-paniculata_contig2340.6319.1 ID=mRNA_H-paniculata_contig2340.6319.1|Name=mRNA_H-paniculata_contig2340.6319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4446bp|location=Sequence derived from alignment at H-paniculata_contig2340:7362..10255+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGCCTGGGTCAAGTAACACCCGAGGGATGCGCGATGATGACCAG
AGCTAATGGGGAGATGGCAAGCCTGGGTCAAGTAACACCCGAGGGATGCG
CGATGATGACCAGAGCTAATGGGGAGCCGTCGTCTCTTCGCTTCCCTAAG
GAGGCGACATGTGACGTGGAGTGCGCCATGAAAGTAGAGTCCCTTCGCAT
TCTTAGCAAAAAGCGCAAACAGTCACAAAGAACTGAACCCACTACGGGGA
ACAACGGCCCGCCAGCCAGCAGCGGGAAAGGCGTCAAACGCGCGTTGCCA
GTCGCCGGAGACCCAGGCAGGGGCAACAATTCGAGCCGCCCACCAGGTTG
CAAATCGTCGTCAGGCTCGACTCCAAACCATACCAAGTTGCATTCAGGGG
GGTCATCGCCTGGAGGGTCATCTAGCAAGGAGTCTCAGCGGCGTCGATTT
GCCTGGTCGGAGCCCCTGCACCAAGACTTTGTTGCGGCCGTGTTCGACAT
CGGGCTAAAGTGCGCCTCACCCAAGCTCCTTCTAGAAATGATGCCCGTGG
TGGATGGGCTTACCTCAGAGCACATCAAGAGTCACTTGCAGAAGTACCGG
TTGCATCGACAGCGTTCACGGGAGGAGTTCTTGAAGAGCTATGGGTACTT
GACGGACCTCGACGGGGGCAAGGGGCTTGGAGGGGGGTCGGCCGTAGCTG
CTATCAAGGCGGCGGCTGCCGCTGCGGGAGACTTGAGCGGCTCAGTGGAT
GTTAAGGGAGCAGTCCCCTGTTCCGCAGCGGTACCGGACAAGGTAGGCTG
CGGAGCGAGCTGCGCCTGCGAAGGAGGTGCGCAAATGGCGTCGGATGGTG
GGATTGACGAGAAGGCACCGATCCCCGGGAGTTCTCCTAACGTTGGTGCG
ATTAGGCGAGGGCCCAATGGTGAGAGTTGTGATTCCAAGGGCCTGCCCAA
GTGGACCGTCAAAACGGCTTCCGGTGAGTGTGACCACGGTGACAAGGGTG
GCCAAGGCAGCATGGGCGTTGCGGTGGGCAGTCAAGGTAAATCGACTAGG
GTGGGAATTGCCGGGGATATAACACCGGGCCACGTACCACCAGGTGCTGG
TGCCTTGCCAGTGGTGACGAGTGTGCTACTGCAATCGCATCTCGAACTCT
TGGCCAAGGGCATCGATATACAGATACAGTTTCATGATCACCTGAGGGAG
GTGGTCAACAGCCAGAAGGCACTACAGGCACAGTTGCTTGGGCAGTCTGG
AAACTGTAGCGGTGTGCCGCTTCATCCTGGAGGTTTCGCAAGTCCAACTC
TCGCTGCCACTGCAGGTATCGTCCGTGGGGTGATGCAGAACCAACACGTG
GATCTAGCCGAAGGTCGAGGGAATGCGCTTCATAATTTGCAGCGGGGATT
GTTGATGATGAACGGCGTGACCGCAGGTGAGAGTGTCTTGCCCGCTCCTG
TCACCAGACGAGATACATCTGTCGAAGGTATGGTAACGGCGGGCATTACA
GTACAAGAATCACCGGTGCAGGGCGGTTTGACAGGAGAAACTGCGGGCGA
TACTCGGCGAGGACGGAACGGTAGCGACATTCATGTGGCAAGCACGAAAC
CGGCGGTGGTCGCCGTGACTACTTCACCTCAAGTGTCCGCTCATGCTCAT
CCCACACATAATGCCTGCGTGCATCAGTCAACGGCCGGCAAGAACCAGCG
TGAGGGGAGCAGCATGGCTAATTCTTTGTCGCGCTTTAGTCTGGCAGCTA
TCCGGGCTGCAGTGTCGGTTCGTCCGGATGTAGGTGGAAATTCGCCGAGG
TCCGCGCCTCCAAGCCTGTCAGTGATGGCAGATATTGGACGGCGGGCTTA
CGTCCCAGGTGATTACACACTCAAAAACAAGAGCGCGGAGGTGGGAGGGG
TACAAGATAGGCGTGCAGAAGAAGGTTCGTTAGAAGTAGGTGGGGCAGGC
GAGGGAGAAGTAGGGGGCAAAGGTGGTGACGCACCAAGGTGCGATCAGGT
CGAGGCACGCATCAGTGCGCACGGTAACGATCTTGTGGAGCCGGCGTTGG
CGGTTGCCGATGGGCAGGATCCGCGCATGCTTCAGCGCTGCATGCAGGCA
CAGATGGAGATGCAGAGAGCAATGTTGGAGGCGTGCGTGGATCAGGCGAC
ACTATTCAAGACACAACGGACGTGGGGCGGGCAATCGGGGGTTGTTCCTG
TCCAGGCGGGAGCGTTGGCGAAAGGCGGTGCAGCGGGCTCTAGTGCACAA
GGCAGTGGGGAGGGTGGGGATGGAGGTGGCAGGATTCCGTCGTCTCTTCG
CTTCCCTAAGGAGGCGACATGTGACGTGGAGTGCGCCATGAAAGTAGAGT
CCCTTCGCATTCTTAGCAAAAAGCGCAAACAGTCACAAAGAACTGAACCC
ACTACGGGGAACAACGGCCCGCCAGCCAGCAGCGGGAAAGGCGTCAAACG
CGCGTTGCCAGTCGCCGGAGACCCAGGCAGGGGCAACAATTCGAGCCGCC
CACCAGGTTGCAAATCGTCGTCAGGCTCGACTCCAAACCATACCAAGTTG
CATTCAGGGGGGTCATCGCCTGGAGGGTCATCTAGCAAGGAGTCTCAGCG
GCGTCGATTTGCCTGGTCGGAGCCCCTGCACCAAGACTTTGTTGCGGCCG
TGTTCGACATCGGGCTAAAGTGCGCCTCACCCAAGCTCCTTCTAGAAATG
ATGCCCGTGGTGGATGGGCTTACCTCAGAGCACATCAAGAGTCACTTGCA
GAAGTACCGGTTGCATCGACAGCGTTCACGGGAGGAGTTCTTGAAGAGCT
ATGGGTACTTGACGGACCTCGACGGGGGCAAGGGGCTTGGAGGGGGGTCG
GCCGTAGCTGCTATCAAGGCGGCGGCTGCCGCTGCGGGAGACTTGAGCGG
CTCAGTGGATGTTAAGGGAGCAGTCCCCTGTTCCGCAGCGGTACCGGACA
AGGTAGGCTGCGGAGCGAGCTGCGCCTGCGAAGGAGGTGCGCAAATGGCG
TCGGATGGTGGGATTGACGAGAAGGCACCGATCCCCGGGAGTTCTCCTAA
CGTTGGTGCGATTAGGCGAGGGCCCAATGGTGAGAGTTGTGATTCCAAGG
GCCTGCCCAAGTGGACCGTCAAAACGGCTTCCGGTGAGTGTGACCACGGT
GACAAGGGTGGCCAAGGCAGCATGGGCGTTGCGGTGGGCAGTCAAGGTAA
ATCGACTAGGGTGGGAATTGCCGGGGATATAACACCGGGCCACGTACCAC
CAGGTGCTGGTGCCTTGCCAGTGGTGACGAGTGTGCTACTGCAATCGCAT
CTCGAACTCTTGGCCAAGGGCATCGATATACAGATACAGTTTCATGATCA
CCTGAGGGAGGTGGTCAACAGCCAGAAGGCACTACAGGCACAGTTGCTTG
GGCAGTCTGGAAACTGTAGCGGTGTGCCGCTTCATCCTGGAGGTTTCGCA
AGTCCAACTCTCGCTGCCACTGCAGGTATCGTCCGTGGGGTGATGCAGAA
CCAACACGTGGATCTAGCCGAAGGTCGAGGGAATGCGCTTCATAATTTGC
AGCGGGGATTGTTGATGATGAACGGCGTGACCGCAGGTGAGAGTGTCTTG
CCCGCTCCTGTCACCAGACGAGATACATCTGTCGAAGGTATGGTAACGGC
GGGCATTACAGTACAAGAATCACCGGTGCAGGGCGGTTTGACAGGAGAAA
CTGCGGGCGATACTCGGCGAGGACGGAACGGTAGCGACATTCATGTGGCA
AGCACGAAACCGGCGGTGGTCGCCGTGACTACTTCACCTCAAGTGTCCGC
TCATGCTCATCCCACACATAATGCCTGCGTGCATCAGTCAACGGCCGGCA
AGAACCAGCGTGAGGGGAGCAGCATGGCTAATTCTTTGTCGCGCTTTAGT
CTGGCAGCTATCCGGGCTGCAGTGTCGGTTCGTCCGGATGTAGGTGGAAA
TTCGCCGAGGTCCGCGCCTCCAAGCCTGTCAGTGATGGCAGATATTGGAC
GGCGGGCTTACGTCCCAGGTGATTACACACTCAAAAACAAGAGCGCGGAG
GTGGGAGGGGTACAAGATAGGCGTGCAGAAGAAGGTTCGTTAGAAGTAGG
TGGGGCAGGCGAGGGAGAAGTAGGGGGCAAAGGTGGTGACGCACCAAGGT
GCGATCAGGTCGAGGCACGCATCAGTGCGCACGGTAACGATCTTGTGGAG
CCGGCGTTGGCGGTTGCCGATGGGCAGGATCCGCGCATGCTTCAGCGCTG
CATGCAGGCACAGATGGAGATGCAGAGAGCAATGTTGGAGGCGTGCGTGG
ATCAGGCGACACTATTCAAGACACAACGGACGTGGGGCGGGCAATCGGGG
GTTGTTCCTGTCCAGGCGGGAGCGTTGGCGAAAGGCGGTGCAGCGGGCTC
TAGTGCACAAGGCAGTGGGGAGGGTGGGGATGGAGGTGGCAGGATT
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