mRNA_H-paniculata_contig23359.6298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 174 bits (441), Expect = 4.260e-47 Identity = 89/201 (44.28%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 4 FTYLGCFVDAGSDRVLTGTSFKN-QAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYTESPLGY---------------TGCFVDSNVDRVLTGNSLKN-EPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
+++ GC+VD+ DRVL+G S + + +T CA CEGS YFG +F ECFC S + PD LG++ C M+C+GD SE CGG AI VYEY++ GCFVD + DRVL+G+S+ + MT+ CA+FC G+ ++GTE+ ECF +GD D LG+++ C MTC+GD SE CGG NAI ++
Sbjct: 177 YSFAGCYVDS-PDRVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYESVGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVY 376
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 140 bits (353), Expect = 4.850e-37 Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 1
Query: 4 FTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEY-TESP---LGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
F+Y+GCF D DR++ + +++T ++C C GS YF T++ +EC+CGP+ + ++ G++T C C G+ ETCGG A SVY Y T P Y GCF D DR++ +L +MT+E+C C G+ ++ T++G+EC+ G G D+++ G+ST CT C G+ E CGG A S++
Sbjct: 126 FSYVGCFQD-DQDRIME-LALTESSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQ-DRIME-LALTESSSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVY 309
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A0F4ZFK6_9PEZI (Uncharacterized protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZFK6_9PEZI) HSP 1 Score: 141 bits (356), Expect = 6.590e-36 Identity = 81/194 (41.75%), Postives = 116/194 (59.79%), Query Frame = 1
Query: 1 GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVY-------EYTESPLGYT--GCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
G YLGCF +A + RVL + QA +T ++C + C G YFGTE+ EC+CG +N+PD L DAT C+M C GD+ + CGG + ++VY + S GY GC+ DS RVLTG+ +E MT E+CA C ++G E+G +C+ G + + + T+CTMTC G+ SE CGGS+ IS++
Sbjct: 164 GTPYLGCFQEAAT-RVLPNRALA-QANMTAEICLANCVGYLYFGTEYGNECWCG--NNKPDLLADATDCSMVCAGDDEQLCGGPDRLTVYGPQAIKQDTLPSIAGYAYQGCYSDSATARVLTGSFYYDE-AMTLEMCATDCSLYEYFGVEYGTQCYCGTSVSNTSAIMPPTSCTMTCGGNSSETCGGSDRISLY 352
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 136 bits (343), Expect = 6.020e-35 Identity = 75/185 (40.54%), Postives = 109/185 (58.92%), Query Frame = 1
Query: 7 TYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDATCNMSCTGDESETCGGRNAISVYEYTESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHYGV 561
+YLGCF D RV T + + A +T VC+ LC S ++GT++S EC+CG + + D G+ C+M+C+GD S+TCGG A+SVYE + GY GC+ D R+ + MTSE+C CG +YGT++ +C+ G N D +D G + C M C+GD SEICGG +S++ V
Sbjct: 15 SYLGCFSDPADSRVFD-TQYSDSA-MTAAVCSVLCASSAFYGTQYSSECWCGDNVDY-DANGEGVCDMACSGDSSQTCGGFYAMSVYENPDDS-GYLGCYSDPADSRIF--ELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNAD-YDANG-AGECDMACSGDASEICGGFYTMSVYENV 191
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: C5G163_ARTOC (Uncharacterized protein n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5G163_ARTOC) HSP 1 Score: 137 bits (346), Expect = 2.710e-34 Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 4 FTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPS-SNEPDRLGDATCNMSCTGDESETCGGRNAISVYEY-----TESP----LGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
+T+ GC+ D+ R LTG +F + +T+ C+SLC+G +FG E+ EC+CG S SN + ++ CN C GD SETCG + +Y+ T +P Y+GCF DS R L+ + + NE MT E+CA FC G ++GTE+ EC+ G N L C++ C+G++++ CGGSN I+++
Sbjct: 545 YTFDGCYTDSPESRTLTGAAFVD-GNMTVTACSSLCKGYQFFGLEYGIECYCGNSRSNATMQAPESECNQPCGGDNSETCGASYRVGIYKDNTWIPTTNPQIPGYDYSGCFNDSASARALSDSFVYNEK-MTVELCATFCNGTKYFGTEYFSECYCGANLSPESTLKAEADCSLFCSGNNTQYCGGSNRINLY 735
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A1Y2FN79_PROLT (WSC domain-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FN79_PROLT) HSP 1 Score: 134 bits (338), Expect = 3.290e-34 Identity = 84/192 (43.75%), Postives = 109/192 (56.77%), Query Frame = 1
Query: 13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGD---ATCNMSCTGDESETCGGRNAISVY-----EYTESPLGYTGCFVDSNVD-RVLTGNSLKNEPTMTSEVCAEFCGGAPF--YGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHY 555
LGC+ D + R L G SF ++I+ CA LC+G T +G E+S EC+CG RLG A CNM+C+G +E CGG NA+SVY + + GCF D RVL G + ++ MT VC+ FC F +GTEFG+ECF G S+ CT +CAGD SEICGGSNAIS++Y
Sbjct: 146 LGCYEDQINYRSLNGASFS-APDMSIEKCAGLCQGFTNYGVEYSNECYCGNGL----RLGPTAAANCNMACSGSPNEICGGSNALSVYGAPVVASDVNNVTSIGCFTDFYPQSRVLDGANTASDE-MTEAVCSAFCAQRAFTLFGTEFGRECFCGNTLPTVS----SSGCTQSCAGDSSEICGGSNAISVYY 327
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 134 bits (337), Expect = 6.220e-34 Identity = 68/194 (35.05%), Postives = 112/194 (57.73%), Query Frame = 1
Query: 13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYT-------------ESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
LGC+ D DR++ + + + +T ++C C GSTYF T++ +EC+CG + + G++T C +C+GD S+TCGG NA +VY Y E P GC+ D DR++ L ++ +MT+E+C C G+ ++ T++G+EC+ G G D+ G+ST CT C+GD + CGG +A +++
Sbjct: 200 LGCYEDDPEDRIMDNLALSDSS-MTTELCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVL-SDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVY 391
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A6A6P5T9_9PEZI (Uncharacterized protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P5T9_9PEZI) HSP 1 Score: 136 bits (343), Expect = 8.240e-34 Identity = 71/201 (35.32%), Postives = 114/201 (56.72%), Query Frame = 1
Query: 1 GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPS-SNEPDRLGDATCNMSCTGDESETCGGRNAISVYEYT---ESPLG----------YTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHYGV 561
G+ Y GC+ D+ RVLT S ++T ++C+S C G+ YFG E++ EC+CG + + ++ CNM+C+GD + CGG N +++++ T E P G Y GC DS RVL +L + +T E+CA+FC G+ ++GTE+G+EC+ G + T C+ CAGD+ ++CG N +S++ V
Sbjct: 814 GWAYQGCYTDSVGARVLTSKS-TTSGSMTYEMCSSFCGGNVYFGVEYAGECYCGDRFTGSTEEADESDCNMACSGDANANCGGPNRLTLFKSTSNEEPPAGPANAEIPGYSYVGCKTDSVGARVLDAMTLF-DAQLTVEMCADFCDGSTYFGTEYGQECYCGDGFSNPTSDAPETDCSFACAGDEQQLCGAGNRLSLYEKV 1012
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: T0KYV9_COLGC (WSC domain-containing protein n=3 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=T0KYV9_COLGC) HSP 1 Score: 131 bits (330), Expect = 3.840e-33 Identity = 78/206 (37.86%), Postives = 113/206 (54.85%), Query Frame = 1
Query: 10 YLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCG---PSSNEPDRLGDATCNMSCTGDESETCGGRNAISVY---------------------EYTESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPF--YGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISI 549
Y+GCF D G+ RVL F + + +T CAS C G TYFGT++S+EC+CG P+ + PD A C+M+CTG SETCGG +SVY T S Y GC+ D+ RVL+G ++K + MT E+CA FC + + +G E+ EC+ G + D + T CTM C G+++E+CG N +++
Sbjct: 111 YVGCFAD-GNTRVLPSKQFTSDS-MTAAACASNCAGYTYFGTQWSRECWCGNTLPTVSAPD----AECSMTCTGSSSETCGGSLRLSVYGPNANAAYNPGSTSNTGTTSFPTTVSNFAYQGCYTDNVPQRVLSG-AVKFDGAMTLEMCASFCSSSNYGVFGVEYSGECYCGNSLDTASKKVAETECTMKCKGNNAELCGDGNRLNV 309
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 130 bits (328), Expect = 4.630e-33 Identity = 63/184 (34.24%), Postives = 108/184 (58.70%), Query Frame = 1
Query: 13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYTESPLG---YTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
LGC+ D DR++ + + + +T ++C C GSTYF T++ +EC+CG + + G++T C +C GD +TCGG +A +VY YT+ + GC+ D + R++ +L + +M+ E+C C G ++G ++G+ECF G + D G+S+AC C GD ++CGG A+S++
Sbjct: 207 LGCYGDDREDRIMDDLALSDYS-MTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAFVGCYQDESGSRIME-LALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVY 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23359.6298.1 >prot_H-paniculata_contig23359.6298.1 ID=prot_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKEback to top mRNA from alignment at H-paniculata_contig23359:2287..3663+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23359.6298.1 ID=mRNA_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig23359:2287..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23359:2287..3663+ >mRNA_H-paniculata_contig23359.6298.1 ID=mRNA_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig23359:2287..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |