mRNA_H-paniculata_contig23315.6285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23315.6285.1
Unique NamemRNA_H-paniculata_contig23315.6285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23315.6285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23315contigH-paniculata_contig23315:1068..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.4968822-CDS-H-paniculata_contig23315:1067..16491622929660.4968822-CDS-H-paniculata_contig23315:1067..1649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23315 1068..1649 +
1691480955.7080555-CDS-H-paniculata_contig23315:1067..16491691480955.7080555-CDS-H-paniculata_contig23315:1067..1649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23315 1068..1649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23315.6285.1prot_H-paniculata_contig23315.6285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23315 1068..1649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23315.6285.1

>prot_H-paniculata_contig23315.6285.1 ID=prot_H-paniculata_contig23315.6285.1|Name=mRNA_H-paniculata_contig23315.6285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
VLQEAEGSLLPLRSSPGEIDGDAARVYRHASDDALLSAHRQRRDKACQPD
SVSRRFGVTAPPASAGVVDEMSTDAGGKSWRAAAATAAGVGTAASITATR
GGGRGISIGSWADAPGSAGEGLFGDDAEDDRGEIPGDDGVGISGMPRGTP
DHSRLGAAAPDGDFWRHRLVGAGANFSRDKSAAGVGISSDKFGG
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mRNA from alignment at H-paniculata_contig23315:1068..1651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23315.6285.1 ID=mRNA_H-paniculata_contig23315.6285.1|Name=mRNA_H-paniculata_contig23315.6285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at H-paniculata_contig23315:1068..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCCAGGAAGCAGAAGGATCGTTACTGCCGCTGCGTTCCTCCCCCGG
CGAAATTGATGGTGACGCGGCTAGGGTGTACCGACACGCGTCCGATGATG
CGTTGTTGTCGGCGCACCGGCAGCGAAGAGACAAGGCTTGCCAGCCAGAT
TCAGTGTCTCGACGATTCGGTGTAACTGCTCCTCCGGCGAGCGCTGGAGT
TGTCGACGAGATGTCGACGGACGCGGGAGGAAAGAGTTGGCGGGCGGCGG
CGGCGACGGCGGCGGGGGTCGGCACAGCAGCATCAATTACAGCGACGAGG
GGCGGTGGGCGCGGTATCTCCATTGGGAGCTGGGCTGATGCACCGGGATC
GGCGGGAGAAGGGTTATTCGGTGACGACGCCGAAGATGACCGAGGAGAGA
TCCCGGGTGATGATGGTGTTGGCATCTCTGGCATGCCCAGGGGAACGCCC
GATCATTCTCGGCTTGGTGCGGCAGCGCCGGACGGGGACTTTTGGCGGCA
TCGGTTGGTTGGTGCCGGTGCAAATTTTTCTCGGGATAAGAGTGCCGCCG
GAGTAGGCATCAGTAGCGATAAATTTGGGGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23315:1068..1651+

>mRNA_H-paniculata_contig23315.6285.1 ID=mRNA_H-paniculata_contig23315.6285.1|Name=mRNA_H-paniculata_contig23315.6285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig23315:1068..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCCAGGAAGCAGAAGGATCGTTACTGCCGCTGCGTTCCTCCCCCGG
CGAAATTGATGGTGACGCGGCTAGGGTGTACCGACACGCGTCCGATGATG
CGTTGTTGTCGGCGCACCGGCAGCGAAGAGACAAGGCTTGCCAGCCAGAT
TCAGTGTCTCGACGATTCGGTGTAACTGCTCCTCCGGCGAGCGCTGGAGT
TGTCGACGAGATGTCGACGGACGCGGGAGGAAAGAGTTGGCGGGCGGCGG
CGGCGACGGCGGCGGGGGTCGGCACAGCAGCATCAATTACAGCGACGAGG
GGCGGTGGGCGCGGTATCTCCATTGGGAGCTGGGCTGATGCACCGGGATC
GGCGGGAGAAGGGTTATTCGGTGACGACGCCGAAGATGACCGAGGAGAGA
TCCCGGGTGATGATGGTGTTGGCATCTCTGGCATGCCCAGGGGAACGCCC
GATCATTCTCGGCTTGGTGCGGCAGCGCCGGACGGGGACTTTTGGCGGCA
TCGGTTGGTTGGTGCCGGTGCAAATTTTTCTCGGGATAAGAGTGCCGCCG
GAGTAGGCATCAGTAGCGATAAATTTGGGGGTGTGCTCCAGGAAGCAGAA
GGATCGTTACTGCCGCTGCGTTCCTCCCCCGGCGAAATTGATGGTGACGC
GGCTAGGGTGTACCGACACGCGTCCGATGATGCGTTGTTGTCGGCGCACC
GGCAGCGAAGAGACAAGGCTTGCCAGCCAGATTCAGTGTCTCGACGATTC
GGTGTAACTGCTCCTCCGGCGAGCGCTGGAGTTGTCGACGAGATGTCGAC
GGACGCGGGAGGAAAGAGTTGGCGGGCGGCGGCGGCGACGGCGGCGGGGG
TCGGCACAGCAGCATCAATTACAGCGACGAGGGGCGGTGGGCGCGGTATC
TCCATTGGGAGCTGGGCTGATGCACCGGGATCGGCGGGAGAAGGGTTATT
CGGTGACGACGCCGAAGATGACCGAGGAGAGATCCCGGGTGATGATGGTG
TTGGCATCTCTGGCATGCCCAGGGGAACGCCCGATCATTCTCGGCTTGGT
GCGGCAGCGCCGGACGGGGACTTTTGGCGGCATCGGTTGGTTGGTGCCGG
TGCAAATTTTTCTCGGGATAAGAGTGCCGCCGGAGTAGGCATCAGTAGCG
ATAAATTTGGGGGT
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