mRNA_H-paniculata_contig233.6274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig233.6274.1
Unique NamemRNA_H-paniculata_contig233.6274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig233.6274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig233contigH-paniculata_contig233:14077..16678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size795
Cds size795
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.171581-CDS-H-paniculata_contig233:14076..146671622929659.171581-CDS-H-paniculata_contig233:14076..14667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig233 14077..14667 -
1691480955.0695577-CDS-H-paniculata_contig233:14076..146671691480955.0695577-CDS-H-paniculata_contig233:14076..14667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig233 14077..14667 -
1622929659.1912353-CDS-H-paniculata_contig233:16474..166781622929659.1912353-CDS-H-paniculata_contig233:16474..16678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig233 16475..16678 -
1691480955.0859497-CDS-H-paniculata_contig233:16474..166781691480955.0859497-CDS-H-paniculata_contig233:16474..16678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig233 16475..16678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig233.6274.1prot_H-paniculata_contig233.6274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig233 14077..16678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig233.6274.1

>prot_H-paniculata_contig233.6274.1 ID=prot_H-paniculata_contig233.6274.1|Name=mRNA_H-paniculata_contig233.6274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MDDERDADSQTSNFISLSLSCWMMRSLWQKGVSEDRHIRVGIADTVLLED
GHLVCWYFTSSKSGLVLKRDQKRCTWDELFRFLVRRAKGMWGSGNDQWTP
GVIATARRLRGGQTSAVMLSASDIKSLREKHNLHLLDEIVAIQPYITRTP
FSGCGLFETKFTRKEQSRKAQVASVTYELVHWNEMSNSGDNLQQPDNSHI
LPRDIPDMRYGQGRGGHQETLPCGNIVSGSRQRVHGVLHRVLAATTKDIV
KHVEREVSEPVSEC*
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mRNA from alignment at H-paniculata_contig233:14077..16678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig233.6274.1 ID=mRNA_H-paniculata_contig233.6274.1|Name=mRNA_H-paniculata_contig233.6274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2602bp|location=Sequence derived from alignment at H-paniculata_contig233:14077..16678- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGATGAAAGAGATGCTGACAGTCAGACATCGAACTTTATCTCGTT
GTCTCTTTCGTGCTGGATGATGCGCAGCCTGTGGCAGAAGGGAGTGTCTG
AAGACCGACACATCCGAGTTGGAATTGCTGACACTGTGCTGCTGGAGGAC
GGGCACTTGGTATGCTGGTACTTCACAAGCTCCAAGTCTGGGCTCGTGCT
AAAGGTATTACATTGTGCATGAAACGATTTCTGTCAACAATAGTTTGTGC
TCGAGATTGTGGGCAGTGGCGGGACTTACTCACTAATACCGTCGTAGTGT
GTACCTTCAAGATGCATGCAAGCAACCAGGCTGCTCGTTGCAAATAGACC
ATCATGACCGTCAAGTTACAACACTGCCTGTAGAGTTTGCGTGAGCTAGA
CGAAATGAAAACCGTTAGACTTACAACGTCGATATTAACTATAGCCATTC
CTATACACACACGCAGGGACCACCGAATGAGAGCCCTAGGGTACCGACTG
TAGTATTGAAGACAATCAACTATTGGCTACGCGAGACGGTGGTACATGGT
ATGTATGTATGTATGTGCTGCGCTCATTCCTTGCGATCTCCCTTAAAGTG
TAAACACCTGAAAGGGAGTCAAAGTATCCCCAAATATTGCTGCCACTGTT
GACTGGAAACTCTATATCACAGGATATACACAGACTAGCGACGTCCATGT
TTATCGGTGTCTACTACATCCGCTGACTACAATAATCCAACAACAGTTAT
TCTCCGGAAGTTCCATGTATCGACAGTACAGCGGCCGTGCGAGAAGAACA
GTCGTTATCATTTTGCTAAGAAAGAGATACCATTGGCGATGGCGCGTCGT
CGACGACTCCAAACTGATCCCAGCGCCGAAAGTCCCCAACCGTATTTGCT
GTTGAGCATGCCATGATCGATTTATCACGAATGACTTGCTATTAGTTAAA
AACTTTCCGTGCTTTTTTTTCTCGCCCCAGCACCAGAAGTAGCTGGAGAG
TCGATGCACAGGCGTGTGCGACAGGTGTGATGCGTTACGCCGTAAAAAAT
AGATCCTGTTTAATCATTTAGTAACTATATGCATCACGGAATTAGTTGTA
TTTTGAAGGCATTTTCTGTCTACTAACGACCCATTTGGGGGAAAATCAAC
ATCTACCTCACCCACCAGGTTAAATCACAGAGCACATCACAACAGTCCGC
GCACGGTTTCGCGTTGTTTTCGACGAGAAAATTCACGCAAAGTTAGCATG
GCTTGATGTGACGCCAAGTTTTTAATGCTAATTTCAAATGTAAAATTGAT
GTTGCAGGACTGGGCAACGTTCCAGACACTTATGAGAGACAGGAGAAACA
AGTGTCCCAGACTGCAGGGTTAGGACGTGCCCACATCAGAATGTAATCGC
TTAAGGCACAGCAATCACCTTGCACGTGGTGAACAATCGAGGCAGTGCAC
CAGATTAAATCAGATATATTTTGGGCTAGCCGTGTGTCGGTGTTGCAGTA
CGCTCTGTGCAGCGTATGAATGTGGGTACTACATTGTTCACAATCGTTGT
CTTGATCCCTCTGTTGGGACACACTCATGGGTGTGTATCACACATAAAAC
AAAGATGTAGCACCATAATTGCTGTGCACATCATGCAGACATCACTCTAG
AACTCTTGGAGATGTCGACCTCGAGCCGCCTGGTTAGCATGGATGACCAG
TGAGCATGTTTAATGTTGCATAAGCGCAACTGTCGTCAAATGCACCAAAC
TCTTTTCAATCCGAAACTTATAGCCTCGACGGATGGGACACAGTTTGTTA
AGGGTGCCTAGGATCTCTTCAACAAGATAAATGGAGAACATAACTTGACA
ACTTGATGCTATCGTACCGTGGTTTGTGACCAAAGAATGCCAATGATACC
ATCCTCGAACCAACATCTGAATCCCCTATCCCACGATCTCAGATCCGTAA
CCACTGTCGATACTCAGAATCACCAACAAACGAAGTGTGGCCTTCTCTAT
ATTAACGGCAGCGCGACCAAAAACGCTGCACCTGGGATGAGCTGTTTCGG
TTCCTCGTTCGTCGAGCAAAAGGAATGTGGGGATCCGGAAACGACCAGTG
GACACCGGGAGTTATCGCCACGGCTAGAAGACTGCGTGGGGGGCAAACTA
GTGCTGTGATGCTCAGTGCTTCAGATATAAAGTCTCTACGCGAGAAACAC
AACTTGCATCTTTTGGATGAGATTGTTGCTATTCAGCCGTATATTACCCG
AACACCTTTCTCGGGTTGTGGTTTGTTCGAGACCAAGTTTACGCGCAAGG
AGCAGTCTCGAAAAGCGCAAGTAGCATCTGTGACGTACGAGCTGGTTCAT
TGGAATGAGATGAGCAACAGCGGCGACAATCTGCAGCAACCGGATAATAG
CCACATATTACCTCGCGATATTCCAGATATGCGTTATGGGCAAGGAAGGG
GGGGGCATCAAGAAACGTTGCCGTGCGGAAATATTGTTAGTGGATCGAGA
CAACGCGTACACGGTGTTCTTCACCGGGTGTTGGCGGCTACGACCAAGGA
TATCGTCAAACACGTTGAACGGGAGGTAAGCGAGCCCGTTTCTGAGTGTT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig233:14077..16678-

>mRNA_H-paniculata_contig233.6274.1 ID=mRNA_H-paniculata_contig233.6274.1|Name=mRNA_H-paniculata_contig233.6274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig233:14077..16678- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGATGAAAGAGATGCTGACAGTCAGACATCGAACTTTATCTCGTT
GTCTCTTTCGTGCTGGATGATGCGCAGCCTGTGGCAGAAGGGAGTGTCTG
AAGACCGACACATCCGAGTTGGAATTGCTGACACTGTGCTGCTGGAGGAC
GGGCACTTGGTATGCTGGTACTTCACAAGCTCCAAGTCTGGGCTCGTGCT
AAAGATGGACGATGAAAGAGATGCTGACAGTCAGACATCGAACTTTATCT
CGTTGTCTCTTTCGTGCTGGATGATGCGCAGCCTGTGGCAGAAGGGAGTG
TCTGAAGACCGACACATCCGAGTTGGAATTGCTGACACTGTGCTGCTGGA
GGACGGGCACTTGGTATGCTGGTACTTCACAAGCTCCAAGTCTGGGCTCG
TGCTAAAGCGCGACCAAAAACGCTGCACCTGGGATGAGCTGTTTCGGTTC
CTCGTTCGTCGAGCAAAAGGAATGTGGGGATCCGGAAACGACCAGTGGAC
ACCGGGAGTTATCGCCACGGCTAGAAGACTGCGTGGGGGGCAAACTAGTG
CTGTGATGCTCAGTGCTTCAGATATAAAGTCTCTACGCGAGAAACACAAC
TTGCATCTTTTGGATGAGATTGTTGCTATTCAGCCGTATATTACCCGAAC
ACCTTTCTCGGGTTGTGGTTTGTTCGAGACCAAGTTTACGCGCAAGGAGC
AGTCTCGAAAAGCGCAAGTAGCATCTGTGACGTACGAGCTGGTTCATTGG
AATGAGATGAGCAACAGCGGCGACAATCTGCAGCAACCGGATAATAGCCA
CATATTACCTCGCGATATTCCAGATATGCGTTATGGGCAAGGAAGGGGGG
GGCATCAAGAAACGTTGCCGTGCGGAAATATTGTTAGTGGATCGAGACAA
CGCGTACACGGTGTTCTTCACCGGGTGTTGGCGGCTACGACCAAGGATAT
CGTCAAACACGTTGAACGGGAGGTAAGCGAGCCCGTTTCTGAGTGTTGAC
GCGACCAAAAACGCTGCACCTGGGATGAGCTGTTTCGGTTCCTCGTTCGT
CGAGCAAAAGGAATGTGGGGATCCGGAAACGACCAGTGGACACCGGGAGT
TATCGCCACGGCTAGAAGACTGCGTGGGGGGCAAACTAGTGCTGTGATGC
TCAGTGCTTCAGATATAAAGTCTCTACGCGAGAAACACAACTTGCATCTT
TTGGATGAGATTGTTGCTATTCAGCCGTATATTACCCGAACACCTTTCTC
GGGTTGTGGTTTGTTCGAGACCAAGTTTACGCGCAAGGAGCAGTCTCGAA
AAGCGCAAGTAGCATCTGTGACGTACGAGCTGGTTCATTGGAATGAGATG
AGCAACAGCGGCGACAATCTGCAGCAACCGGATAATAGCCACATATTACC
TCGCGATATTCCAGATATGCGTTATGGGCAAGGAAGGGGGGGGCATCAAG
AAACGTTGCCGTGCGGAAATATTGTTAGTGGATCGAGACAACGCGTACAC
GGTGTTCTTCACCGGGTGTTGGCGGCTACGACCAAGGATATCGTCAAACA
CGTTGAACGGGAGGTAAGCGAGCCCGTTTCTGAGTGTTGA
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