mRNA_H-paniculata_contig23244.6261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23244.6261.1
Unique NamemRNA_H-paniculata_contig23244.6261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23244.6261.1 vs. uniprot
Match: A0A6H5JDT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.380e-39
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:   10 PRAAERKLNGWEAVQAEAERMRIARETLGHSTAVGNLRLEVEVHVDHWVLGERDVMCLWRVVTRNAAMCGGRKEVETTGMMTISLWTSEDGQAPCVDPIPSPTTWAILRSP 342
            PRA ER+L G  AV+ EAER+R+  ETLG  TA GNL+L+ ++HVDHW  GER++MC WRV TRNA +CGGR+E+ET GMM + LWTSEDG+AP V+P    +TWAIL SP
Sbjct:   96 PRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFQLHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKTSTWAILGSP 206
[Close]
BLAST of mRNA_H-paniculata_contig23244.6261.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 7.350e-35
Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   10 PRAAERKLNGWEAVQAEAERMRIARETLGHSTAVGNLRLEVEVHVDHWVLGERDVMCLWRVVTRNAAMCGGRKEVETTGMMTISLWTSEDGQAPCVDP 303
            PRA ER+L G  AV+ EAER+R+  ETLG  TA GN++L+ E+HVDHW  GER++MC WRV TRN  +CGGR+E+ET GMM + LWTSEDG+AP V+P
Sbjct:  976 PRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNIKLKFELHVDHWAFGERELMCQWRVFTRNVGVCGGRRELETRGMMALRLWTSEDGEAPVVEP 1073
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23244.6261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDT9_9PHAE1.380e-3962.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR6_ECTSI7.350e-3562.24Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23244contigH-paniculata_contig23244:1594..2538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.445919-CDS-H-paniculata_contig23244:1593..17341622929657.445919-CDS-H-paniculata_contig23244:1593..1734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23244 1594..1734 +
1691480954.2614546-CDS-H-paniculata_contig23244:1593..17341691480954.2614546-CDS-H-paniculata_contig23244:1593..1734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23244 1594..1734 +
1622929657.4646208-CDS-H-paniculata_contig23244:2337..25381622929657.4646208-CDS-H-paniculata_contig23244:2337..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23244 2338..2538 +
1691480954.2729347-CDS-H-paniculata_contig23244:2337..25381691480954.2729347-CDS-H-paniculata_contig23244:2337..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23244 2338..2538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23244.6261.1prot_H-paniculata_contig23244.6261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23244 1594..2538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23244.6261.1

>prot_H-paniculata_contig23244.6261.1 ID=prot_H-paniculata_contig23244.6261.1|Name=mRNA_H-paniculata_contig23244.6261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MVVPRAAERKLNGWEAVQAEAERMRIARETLGHSTAVGNLRLEVEVHVDH
WVLGERDVMCLWRVVTRNAAMCGGRKEVETTGMMTISLWTSEDGQAPCVD
PIPSPTTWAILRSP
back to top

mRNA from alignment at H-paniculata_contig23244:1594..2538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23244.6261.1 ID=mRNA_H-paniculata_contig23244.6261.1|Name=mRNA_H-paniculata_contig23244.6261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig23244:1594..2538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGTGCCGCGAGCAGCCGAACGGAAGTTGAATGGGTGGGAAGCGGT
GCAGGCGGAGGCGGAGAGGATGCGGATTGCGCGGGAGACGTTGGGGCACT
CGACGGCCGTGGGTAATTTGCGGCTGGAGGTGGAGGTTCACGTGAGTGCT
TTTTTTGTACGTATAGGGGTGTGGGTGCATGCGTCCATAACATATTTCAG
TCACAGTGAGTGGTATGTCATACCATCGTAAGTGTTTATTGTAGATTCCG
CTTTGATTATACTTTTCCCAGTGGTTATGTGTCATACCCAAGTGTTGGGC
GCAATCCAGTGTCTGTGGAAGTGTGGGTTGTCGCGACTGGCACCCACGCG
AAATTGCTTGGCTTTTCCTCTTGGGGGTAAACACGCATTGATTGGGCGGT
GATTCTTGACGCTTTCTTCTAGAGAAGTTGCTTTGTCGTTTTGTTTACAT
GTAACCTGCAACGGCAAGCAGATAATCCATCCTGATCACATCAAAGCCTA
GTAACGAACGTTGTAGCAGAACGGTTGCCCCCAATCTGTGCGACACGAGC
CGAAGGGAAAAACCGGCTCCATTCGGTGTGGTGAGGTACGAACGAAATGC
TTCGTCGCACTCGGAGAGATGCCATGAAACCCCGCGATAATATTTCACCC
AAAAAACAGGTGCACGAGTGAGAACGCGCTGAAACCTATCTTTGAAACCA
CCTGTCCTCCACTCGTGCTGCACCCATTCGCCACCCATACGAAGGTGGAT
CATTGGGTTCTCGGAGAGCGAGATGTGATGTGTCTGTGGCGCGTGGTCAC
GCGCAACGCTGCCATGTGCGGTGGCCGGAAAGAAGTTGAAACGACCGGGA
TGATGACGATTTCCCTGTGGACGAGCGAAGATGGCCAAGCACCATGTGTG
GACCCGATTCCTTCACCGACCACCTGGGCCATCCTCCGCTCTCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23244:1594..2538+

>mRNA_H-paniculata_contig23244.6261.1 ID=mRNA_H-paniculata_contig23244.6261.1|Name=mRNA_H-paniculata_contig23244.6261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig23244:1594..2538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGTGCCGCGAGCAGCCGAACGGAAGTTGAATGGGTGGGAAGCGGT
GCAGGCGGAGGCGGAGAGGATGCGGATTGCGCGGGAGACGTTGGGGCACT
CGACGGCCGTGGGTAATTTGCGGCTGGAGGTGGAGGTTCACATGGTAGTG
CCGCGAGCAGCCGAACGGAAGTTGAATGGGTGGGAAGCGGTGCAGGCGGA
GGCGGAGAGGATGCGGATTGCGCGGGAGACGTTGGGGCACTCGACGGCCG
TGGGTAATTTGCGGCTGGAGGTGGAGGTTCACGTGGATCATTGGGTTCTC
GGAGAGCGAGATGTGATGTGTCTGTGGCGCGTGGTCACGCGCAACGCTGC
CATGTGCGGTGGCCGGAAAGAAGTTGAAACGACCGGGATGATGACGATTT
CCCTGTGGACGAGCGAAGATGGCCAAGCACCATGTGTGGACCCGATTCCT
TCACCGACCACCTGGGCCATCCTCCGCTCTCCAGTGGATCATTGGGTTCT
CGGAGAGCGAGATGTGATGTGTCTGTGGCGCGTGGTCACGCGCAACGCTG
CCATGTGCGGTGGCCGGAAAGAAGTTGAAACGACCGGGATGATGACGATT
TCCCTGTGGACGAGCGAAGATGGCCAAGCACCATGTGTGGACCCGATTCC
TTCACCGACCACCTGGGCCATCCTCCGCTCTCCA
back to top