mRNA_H-paniculata_contig23218.6252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23218.6252.1
Unique NamemRNA_H-paniculata_contig23218.6252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23218.6252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23218contigH-paniculata_contig23218:1523..2031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.5537407-UTR-H-paniculata_contig23218:1522..16831622929656.5537407-UTR-H-paniculata_contig23218:1522..1683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23218 1523..1683 +
1691480953.9320946-UTR-H-paniculata_contig23218:1522..16831691480953.9320946-UTR-H-paniculata_contig23218:1522..1683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23218 1523..1683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.5688996-CDS-H-paniculata_contig23218:1683..20311622929656.5688996-CDS-H-paniculata_contig23218:1683..2031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23218 1684..2031 +
1691480953.9411197-CDS-H-paniculata_contig23218:1683..20311691480953.9411197-CDS-H-paniculata_contig23218:1683..2031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23218 1684..2031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23218.6252.1prot_H-paniculata_contig23218.6252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23218 1684..2031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23218.6252.1

>prot_H-paniculata_contig23218.6252.1 ID=prot_H-paniculata_contig23218.6252.1|Name=mRNA_H-paniculata_contig23218.6252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MNDFASGNGSFDLVIIGLAIHIRVSALTCHRASIKKKPRRPAPLGNSVLS
WAKSPGRYYDTLTRTSEASERHASAMVLGDGHRVEVPLLEAARRSLHISL
REFIVPHSAVQDFRHQ
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mRNA from alignment at H-paniculata_contig23218:1523..2031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23218.6252.1 ID=mRNA_H-paniculata_contig23218.6252.1|Name=mRNA_H-paniculata_contig23218.6252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at H-paniculata_contig23218:1523..2031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGACTGTTAAGACCGGGGTGGGGGGGGGTTGAGTGATCGAGGGACGTG
TCGAGTCATAATTAGTGACGGTGGGCGACGAAAATAAGAGCCTCTACACA
ACATGCACCAGTGAATCAATCCCCGGCAGGAATTGAAGACGCTGCTGTCG
CGCACCAAGTCATGAACGACTTTGCATCCGGTAACGGCAGCTTCGATTTG
GTTATCATCGGCCTCGCAATTCATATTCGGGTGTCAGCACTAACATGCCA
CAGGGCAAGCATAAAAAAAAAACCTAGGCGGCCTGCTCCTCTTGGGAATT
CTGTCTTGAGCTGGGCAAAGTCGCCAGGGCGCTACTACGACACGTTGACA
CGAACAAGTGAGGCGAGTGAGAGACATGCTAGCGCCATGGTCTTGGGTGA
TGGGCATCGAGTAGAAGTACCTCTACTTGAAGCTGCGCGGCGATCTCTAC
ATATATCCCTTCGGGAGTTCATCGTCCCCCACTCAGCTGTGCAGGACTTT
CGTCATCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23218:1523..2031+

>mRNA_H-paniculata_contig23218.6252.1 ID=mRNA_H-paniculata_contig23218.6252.1|Name=mRNA_H-paniculata_contig23218.6252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig23218:1523..2031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGACTTTGCATCCGGTAACGGCAGCTTCGATTTGGTTATCATCGG
CCTCGCAATTCATATTCGGGTGTCAGCACTAACATGCCACAGGGCAAGCA
TAAAAAAAAAACCTAGGCGGCCTGCTCCTCTTGGGAATTCTGTCTTGAGC
TGGGCAAAGTCGCCAGGGCGCTACTACGACACGTTGACACGAACAAGTGA
GGCGAGTGAGAGACATGCTAGCGCCATGGTCTTGGGTGATGGGCATCGAG
TAGAAGTACCTCTACTTGAAGCTGCGCGGCGATCTCTACATATATCCCTT
CGGGAGTTCATCGTCCCCCACTCAGCTGTGCAGGACTTTCGTCATCAAAT
GAACGACTTTGCATCCGGTAACGGCAGCTTCGATTTGGTTATCATCGGCC
TCGCAATTCATATTCGGGTGTCAGCACTAACATGCCACAGGGCAAGCATA
AAAAAAAAACCTAGGCGGCCTGCTCCTCTTGGGAATTCTGTCTTGAGCTG
GGCAAAGTCGCCAGGGCGCTACTACGACACGTTGACACGAACAAGTGAGG
CGAGTGAGAGACATGCTAGCGCCATGGTCTTGGGTGATGGGCATCGAGTA
GAAGTACCTCTACTTGAAGCTGCGCGGCGATCTCTACATATATCCCTTCG
GGAGTTCATCGTCCCCCACTCAGCTGTGCAGGACTTTCGTCATCAA
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