mRNA_H-paniculata_contig23.6162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23.6162.1
Unique NamemRNA_H-paniculata_contig23.6162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: D8LSW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.690e-49
Identity = 97/170 (57.06%), Postives = 135/170 (79.41%), Query Frame = 2 
Query: 3296 MNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKA-AKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDW-VEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEFLPPKEEDE 3799
            M+L++LEKQWE+GDE+ EL++E + + E LER+R +A A    FDP SL +M   ++GAMAAG KD +GPTM+FA+V    + + G SG  N   ++KEET+KVGGRL++LAQLG LEV+VY ++ GSVLVS+Q+GWEG++I+DFLLSRPEV+KV+WN+++F PPKE +E
Sbjct:   34 MDLNELEKQWEDGDEDEELKTEEQAKFENLERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVRSGGLGETGGSGD-NGGSISKEETEKVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQILDFLLSRPEVSKVTWNSRDFYPPKEGEE 202
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A7S2RHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.490e-14
Identity = 53/162 (32.72%), Postives = 92/162 (56.79%), Query Frame = 2 
Query: 3296 MNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEFLP 3781
            ++ D LE++W+ GDEE+EL ++ E+    ++R+R +           +KN+D + +       +  +GPTM+F E+      R   G   +E+L       + G  ++L   GGL VT + IE   VL S QKGW+G ++ +FLL++ +V KV+W+NQ+++P
Sbjct:   29 VDFDALEEEWKYGDEEDELITDDELLFREMQRRREQGI--------DIKNLDVERV----KHQQSMAGPTMMFIEL------RPREGGYAEEELYN-----ITGIWKDLMYTGGLTVTFFNIENDKVLCSMQKGWDGIQVKEFLLTQSQVAKVTWDNQDYVP 167
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A7S1G5Y1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5Y1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.280e-12
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2 
Query: 3284 RMRQMNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEF----LPPKEEDEL 3802
            + R+ + + ++  W EGDEE EL +E E+E  R+E +R   A      P  L+ M  + +  +    +  +GPTM+FA + D         +   +  T +E +++  + R+L    G+ VT Y I    VL + Q GW G E++ FLL +P+ T+V WN   +    + P++ DE 
Sbjct:   48 KFRESDWEAVDNDWREGDEEEELVTEDELEVRRMEARR---AAAPNVSPEQLEVMPTEALEYIKQS-EAQAGPTMMFAALTD-------VNAATGKPWTDDERNELAFQWRDLLATNGVTVTCYDIGDNRVLTTLQHGWRGFELLRFLLDQPDATEVEWNQHTYRAGDMVPEDWDEF 213
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A7S2H4A6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4A6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.300e-10
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2 
Query: 3575 LTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEFLPPK 3787
            LT E+   + G+ +EL    G++V +Y IE+ S++VS QKGW+G+ +  FLL R EV KV+W+NQ+  P +
Sbjct:   11 LTNEDIMTLSGQWKELLFTAGVQVQIYSIEENSLIVSLQKGWDGEIVRSFLLERMEVVKVTWDNQDSYPER 81
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: K3X437_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X437_GLOUD)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-8
Identity = 55/176 (31.25%), Postives = 78/176 (44.32%), Query Frame = 2 
Query: 3272 LEPCRMRQMNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEFLPPKEEDE 3799
            ++  R  Q++ D LEK WE GD E ELRS                      D +     ++ E  A A G      P M+F  + D  +  GA+         K+ TD +  R +EL   GGL+V +Y IE   +LV  QKG +  ++  FLL +PEV +  WN Q F      +E
Sbjct:   26 VQAARKPQIDYDALEKAWEAGDTEQELRS--------------------VGDEQVQSLAEKSEADAKALG------PQMVFVTLRD--DSHGAA--------QKDLTD-LASRWKELLWNGGLDVNIYEIEHAKLLVGLQKGIQVDDLHRFLLEQPEVHEFEWNGQTFSASSSRNE 164
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: W2JU84_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JU84_PHYPR)

HSP 1 Score: 58.9 bits (141), Expect = 7.650e-6
Identity = 49/168 (29.17%), Postives = 75/168 (44.64%), Query Frame = 2 
Query: 3272 LEPCRMRQMNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEF 3775
            LE  R R ++ D LEK WE GDEE ELR+E +                     R L + +++E  A+        GP MIFA + D            + +L  E    +  R +E+   GG+EV +Y +    +LV  QKG    +++ FL  + EV +  WN + +
Sbjct:   19 LECGRARTIDYDALEKAWEAGDEEQELRTEGDE------------------HYRQLTDKNEEEAKAL--------GPQMIFATLTD------------EHELLSE----IASRWKEMMWNGGIEVNIYEVANSKLLVGLQKGIFLSDVMRFLDEQNEVKEYEWNGKAY 144
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A7S2L517_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L517_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.630e-6
Identity = 47/164 (28.66%), Postives = 79/164 (48.17%), Query Frame = 2 
Query: 3296 MNLDDLEKQWEEGDE-------ENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNN 3766
             +L++LE+QWEEGD+       ++E    +E  +E   R+     KG      S + +++ E     AG      P MIF ++              + + T  E D V    +  +++   ++  YPIE   ++V+  KGW GKE+  FLL+R EV +V+WN+
Sbjct:   30 QDLEELERQWEEGDDPGDLIAPDDEFHKLVEKVQESSRRKLEYFRKGYDTGKYSRQTLEKMETEYSNAGK-----PAMIFVKL--------------RSEFT--EVDGVSTFCQSWSEMIAHDIKCYPIESNDLMVTVAKGWVGKEVHKFLLTRTEVLEVTWND 172
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A2R5GJ56_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ56_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.660e-5
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 2 
Query: 3572 KLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNN 3766
            KL ++ET   G RL+ LA+ GG++V+VY +E G ++V+ QKGW    I D +  +PEV  V W +
Sbjct:  105 KLDEQETIGFGDRLKRLAKTGGVDVSVYKLEPGKLVVTLQKGWVATGIYDLISDQPEVDNVHWQD 169
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A0W8CI85_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CI85_PHYNI)

HSP 1 Score: 58.2 bits (139), Expect = 1.660e-5
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 2 
Query: 3272 LEPCRMRQMNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEF 3775
            LE  R R ++ D LEK WE GDEE ELR+E +    +L          K    +   + +++E  A+        GP MIFA + D            + +L  E    +  R +E+   GG+EV +Y +    +LV  QKG    +++ FL  + EV +  WN + +
Sbjct:   19 LECGRARTIDYDALEKAWEAGDEEQELRTEGDEHYRQL--------TDKYVHKQQKYSRNEEEAKAL--------GPQMIFATLTD------------EHELLSE----IASRWKEMMWNGGIEVNIYEVANSKLLVGLQKGIFLSDVMRFLDEQNEVKEYEWNGKAY 154
[Close]
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Match: A0A482SP59_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP59_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 7.900e-5
Identity = 43/170 (25.29%), Postives = 84/170 (49.41%), Query Frame = 2 
Query: 3272 LEPCRMRQMNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKNMDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETDKVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEVTKVSWNNQEFLP 3781
            L+     +++ +DL+KQWE GD++ EL  + E  ++  E++R K       D  +++N  QQ+    + G        M+F ++     D         ++  K  T+ +  R   L + GG+  TVY I++  +L++  K W+ K+++ FL  + EV   + N++ + P
Sbjct:   19 LKNKNWNKIDYNDLDKQWESGDDQEELEHDFEHIRKIQEKKRPKL---NMEDGHAIRNAYQQDPFLFSGG------GMMVFVDLKPKQPDG--------KEWDKRSTELLSKRYSTLLRSGGVVGTVYNIDEKRLLINVDKSWQTKDMLTFLAKQAEVESFTANSKTYSP 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23.6162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LSW7_ECTSI2.690e-4957.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHB1_9STRA8.490e-1432.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1G5Y1_9STRA9.280e-1229.94Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2H4A6_9STRA4.300e-1043.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3X437_GLOUD1.020e-831.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2JU84_PHYPR7.650e-629.17Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A7S2L517_9STRA8.630e-628.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2R5GJ56_9STRA1.660e-543.08Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
A0A0W8CI85_PHYNI1.660e-529.17Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A482SP59_9ARCH7.900e-525.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23contigH-paniculata_contig23:15284..23385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue9e-07
Seed eggNOG ortholog65071.PYU1_T011986
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chaperone for wingless signalling and trafficking of LDL receptor
EggNOG OGs1MHRZ@121069,2E3G1@1,2SAIN@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001680.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons5
Model size1568
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23.6162.1prot_H-paniculata_contig23.6162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23 18579..22397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.0328286-UTR-H-paniculata_contig23:15283..153531622929644.0328286-UTR-H-paniculata_contig23:15283..15353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23 15284..15353 +
1691480948.5631483-UTR-H-paniculata_contig23:15283..153531691480948.5631483-UTR-H-paniculata_contig23:15283..15353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23 15284..15353 +
1622929644.1337864-UTR-H-paniculata_contig23:22397..233851622929644.1337864-UTR-H-paniculata_contig23:22397..23385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23 22398..23385 +
1691480948.6270552-UTR-H-paniculata_contig23:22397..233851691480948.6270552-UTR-H-paniculata_contig23:22397..23385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23 22398..23385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.0498726-CDS-H-paniculata_contig23:18578..187151622929644.0498726-CDS-H-paniculata_contig23:18578..18715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 18579..18715 +
1691480948.5750704-CDS-H-paniculata_contig23:18578..187151691480948.5750704-CDS-H-paniculata_contig23:18578..18715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 18579..18715 +
1622929644.0686545-CDS-H-paniculata_contig23:20427..206141622929644.0686545-CDS-H-paniculata_contig23:20427..20614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 20428..20614 +
1691480948.5958705-CDS-H-paniculata_contig23:20427..206141691480948.5958705-CDS-H-paniculata_contig23:20427..20614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 20428..20614 +
1622929644.0913322-CDS-H-paniculata_contig23:21551..216441622929644.0913322-CDS-H-paniculata_contig23:21551..21644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 21552..21644 +
1691480948.6071465-CDS-H-paniculata_contig23:21551..216441691480948.6071465-CDS-H-paniculata_contig23:21551..21644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 21552..21644 +
1622929644.108251-CDS-H-paniculata_contig23:22304..223971622929644.108251-CDS-H-paniculata_contig23:22304..22397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 22305..22397 +
1691480948.6159663-CDS-H-paniculata_contig23:22304..223971691480948.6159663-CDS-H-paniculata_contig23:22304..22397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23 22305..22397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23.6162.1

>prot_H-paniculata_contig23.6162.1 ID=prot_H-paniculata_contig23.6162.1|Name=mRNA_H-paniculata_contig23.6162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MNLDDLEKQWEEGDEENELRSEMEIEKERLERQRNKAAKGKAFDPRSLKN
MDQQEIGAMAAGMKDTSGPTMIFAEVHDWVEDRGASGSGNKEKLTKEETD
KVGGRLRELAQLGGLEVTVYPIEQGSVLVSTQKGWEGKEIVDFLLSRPEV
TKVSWNNQEFLPPKEEDEL*
back to top

mRNA from alignment at H-paniculata_contig23:15284..23385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23.6162.1 ID=mRNA_H-paniculata_contig23.6162.1|Name=mRNA_H-paniculata_contig23.6162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8102bp|location=Sequence derived from alignment at H-paniculata_contig23:15284..23385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTATCGTGGCTACGCTAGGGGTGTTACTGCCATGCGCTGCCAAACGCA
CTACCAAGGATTGGAGTAAGGTGTGTACTGTAGCAGGGTTCTTTCTGACA
GAGGACGGCAGATCACCCGTGTAAATAGAAGTATAACCAAACTGTCCCCC
GTTCAAATAAGAAAGAGCAGCTAATATGTACTGAGGGGTGTCCGTATCTG
GACTGTCGATGTCGCATGTACTCACTCTTTATCTTGTATATTCAAGGCGC
AGACACTCGAGGATGTGCGCTGTTGTTTCGAGAACACACACTTGCTTCGA
GGTGCGGCTAGCTGCAGTTCTGGTTGCTGTGTCATGTAACAGTGCCTCCA
CCAGCGCGTGGGTTTGCCACTATAGCATGGTTAGCGTTGCGCCTCAGTTA
TCCTCGCTAGATGGTAGCGATACCGTGGTTCCTTTCTTGTTCAAGCCATC
TGTTTCATCCTTTTTTGGATCCCTCTTCGATTTTCAAATATTTTTGTTTT
GGTATTGCTGCGCAGGAAGCACGCAGCGCGGTTTGTTTGGCCCGCAATCG
AAATATTGTCCTTACTGGCTGTCTCTCTGTGAGTCGTTCGCGGCGGTGAG
GGCATTTGATGCTTGCGCTCTGTACTACTTTTGCGTACCCCAAGTGCACC
ACGTCATTCGACATTGCATCATATACCAAGTAGCTTTGCATGATGAGCAT
GTAACCAGGTGCTTGAAAGTTCAGGGTTTAAGGCGTTGTTTGCACAAAAA
ATGATACGCAGCCTTCCGACAGTCGAAACGTTAAAACGGTGTCTTGTCGA
GGAGATGAAAAATATACTTGCAAGAAACCAAAAGTGAGAAAGCTCTGTTG
ACCAATGACAGAGCTTCTTCCGTTTAGTTTCTTGCCAATTTCATCCAACC
CTTTTCAAAAAGCCCGAGTGCCGCCGACGTGAACCAGGCACTAGTATCTT
CAGCCCAAGGTTATATCCTGACGAATCCACAACTACTGCCCTTTTCAGAG
GGAATGAGTCAAGAATCAACCGACGGATTCGCCTGTATTGCGATTTTCCA
TTTTCCACTATGTAGCGCTTGTATTACATAAACAATAAACATTGGTCCTA
GAAAACAGGTTTTCAAGGGGTGAGCACCACGAATAACGCCCCTCCGAGAC
GGCTATTCCTCACTTGATGTGTCCTCCCCAAGCCTAACGAAGTGTAAGCA
AACAATGCCAACAAAATGCTATAGTTTGTTCGAGCAGCCGGAAGACATTG
ACTTTACTGCCTATTGCAAGAGTCCTTCTGTTGACGTGTCTCAATGAGAT
ATATCCAACGTCCATTTGGGAGTGACTACAATTTTAACCCCCATTTCTGT
GCCTCCGGATGCCGTTTCAGGCGAAACGTCATCAAACAAAAAATGTGGAG
TGGACTTGCACAAAACAGTGCCAGCTGCCTCTCTGTGCTGCATATACCGC
CTGCACTGAAACATTATGTGAACAGTGGCCTCTCCTTATCCCCGTAGTCA
CGTCATCAGATGGGCTTCATTTTTCGCTGTCTTTGAGTTGGGGATTAGAC
GGGGAATGAAGTCCGGTGGTAAATGGGGTTATGGTAGCACCAGAGTATAA
TCTGCTTCTCTTACGAAACAATCAACATTTCACCCCAGATGCCTGAGGTC
GGTTCTCAGTCGAATGCAAGCATGGGGCTTTGCGAGAGATTTTCACGACC
GGTGAACCGAGTGCTAGTCGGGTGTTCGTAGATGTCACCAATCGCAGTGA
TGTGTGGATGCTAACTGTTTCTCGACATTGCCGCTCTCCGCGCCGCTTCC
TGCGCAGTCGCGTGAGTTGTGCTATTGTTCGTCACGACATAGTTGCATTC
TCTTGACGAAATCCTCAGACTGAGAGGCCCACCCCATGTCGGTTGTTTTG
CCCGGTCTGATGACGCTCGTTTTCATCACCCAGCATGCAAGCGTTCCTGT
CCGCTATTCTCGAGTACGACATCCTTACTATCGTAGTTGCAGTACAAGCT
GGGCTAACAAAAAAACACCGGAAAGGTTCCGCAGGCCAAATGTCACTATC
CAAAGCGAAAACTGCCACAAACATGGAACTGCCTGTAACCGTGTAAGCAC
CACGGAGTGAGCCGTGTGCTCTGATCGGCTATCCGGGCACTTTCAGCGTT
TCAAAGTGTATGACGATACGAAATATGGACTGCTATAAGTTATTTTCCAA
ATGTGTTGGTACAATCAAGTATGTTACATATTTGCCCAATTCGTGTCCGA
TTGTTCTCAAAATTGGTCTACCTATTGCTGAAACCACGACGAGGACTGTG
ATACCGATTTGGGTTCCCAACTCGCCACCGTTCCAAAGTAATCGTTGCAG
AAAAAGTGGGGTATAATATATACGTTTTTTTATCGGATTAGGACATAAGT
AGTATTTCTACGAAACGGGCATTTCTCTATGTAGACGTACTTCGGTATGG
AAGCATCGAATAGAAGTTTTTGCCTTAGCCTTTCAAGAGGTATAAAAAAT
AAAATAAAAACGGGCATTTCTCACTTGGTTTTTTGGAGTTTGGACCTGAA
ATTTTGAGGGTAGGTGTGCATCAAATTTTCGAAGGTCTCTAACGATAATA
CTTTTTGATTTTATCCTTATTCCGAAGATAAAATCGGGTCTTTGAACCCC
TAAAATCGTCCAAGAACCGTTATGTTCGGAACGAAATAACCAAAAGGTAT
CATCGTTAGAGACCTCCGAAAAATTGATGCGCACCTACCCTCAAGATTTC
AGGTCTAACCTCCAAAAAATCAAGTGAGAAATACCCAGAGAATGTTTTTG
GTCTCTCTTGGTGGGCCCAGCGAGTACTATAGCTCTGAAGCCACGGCTAC
GCGTGCGCGGTCCGTGTTTTGTCCTCGGCTGACACACAGCGACTCGATGT
GCACGCAAAAAACGTAGGCACACTATCCATCAAGGTTCGCTGTTGCACAT
ATTCCTGAAGTACGGGCTTGGAATCCTCCCACGAACGACGGTCATCACCA
GCCTACGATATAAAAAGACATATCCACACATGTTTTTCAGATGAATCAAG
TGAACAGTTTTGCGGGAAAACACACAAACCACACCCACTGCAACGCACAG
GTTTGGAGCGAACGTTGATTCATCGTAATTACTGTCCCAAAAAATGACGC
CGGACGGTTCAGTTACTACGATGCACCCGTAACCATGACCCACCACCATA
AGTTCGCACAACAAAAGTAACAGTCAGTCGGTGGAATTGATGAAGATGTG
CATAGTACCAAATAGTAGTGTTTGGAACCATGCCGTATGCGCCAGATGAA
CCTTGACGATCTAGAGAAACAGTGGGAAGAAGGCGACGAAGAAAACGAGC
TCAGGAGCGAGATGGAGATCGAGAAAGAAAGGCTGGAGCGCCAGCGCAAC
AAGGCCGCGAAGGGCAAGGCCTTCGATCCAAGGTAAACAATAATTTCCGT
GTTTTTTTATCCAGCTTCAGCGGCAGGTAATCATTTTTTTTGTCAACCAT
AGAAATAGGAAAATGATCATCTCCGGGCGATATAGGGATCTTCCCTTTGG
GCATCGGTCTCGACCCCATCTGACAACTAAAAAGAACTTTTCAAAGATGT
GATGAATGCAGGACCCGCCGCTGTTCAGACAGGCAGTCCAGTACAGACAG
TAAATAGAGTGCGGACAGCGAGATGGTATGGTTCTGCGCGATGACTGCTG
AAACGCCCGATATTCGTTTCTTCCCAATGATCTAATCTAGCGACGCCCTA
AGGAAGAAGTCCCAGCAATTGGTCAATTTGGCTTGATTGTTTGCGGCGGC
GGCGGTGGCAGCGGGGGGGGGGATCGTATTGTTGTTGCGAGAAAACGGGA
AACACGCAAGAGTGTCAGTGTTGCCCTGTTTGGCCACGAACGAGGTACGT
ACCGATATTGTTTGTGTATCACCTTGTCTGTTGTATCGTGGGTGTTTTTG
AATATGTGACGTGGCCACTACTGTGCTGTGCCATTCAACTATTCCAACGC
TTGTATCCATCCGCGAACACGTTGCCATCGTTTCCACGCATTGTAGAGTG
GGGAGTGTTCGAGAGCGCTACAATAACGGAGCCTCTCATGTCCACCATTC
TGAAGTCATGTTTTCGATGTTTTCATGCATGAAACTGTATAACAGTAGTT
TCCGCCCTAGAGAGGACTTCAGTATTAACTGTAACCTCATTACCCCGTTA
GCGCTCAGTGTGTGCTTGCTATCTCTACCTTTTTAGTAGGCATCCGCTGT
TGATATGAAAATTGCCTCGACCTGAACTGGTCCCTTGTACAGTTGGGTAT
GTGCGAAATGAGTGAGTCTTCGGCACATCTTTGGGATGTCGCAACTCTGC
TACTGTAGGCCATTCGTTGACACCGAAATGTGTGATATGCAGCAACTCCA
TCTGCTAAACTACCCCTCAAGGTGCTGTTGGAAGGGACCCTTTCGGCAAA
AAATAAAATTGACAATATATTGTCAAGAGTGCCGCGTTCGTTTGCACGAG
ACCATGCCAATGCCCTTCTTGTATTTGTGCTTTTTGCACACCCCGGACGA
AGATACATGCTTCAAGCACTCGCCACGAAAATGTGAAGCTATCCGCCTGT
GTTGCAGAGGAGGCGAGCACATGAACTAAAGTGGTCGAGCCCTGCTTATT
CGTTTGGCTATTATTATCTGGACCAATGGTATGGTGGATGGTCTGGAGCA
CATAGAGGAAACGTGCTCATGCTGAATTTTCAGACGAACTATTTTCAATT
TCTCGGCGAGATCGCTCGAAGTAGTCGTAGTCACCCGGAGAGTGGCTGTC
TGTGCTCTCTGTAAGAGTTGGACTAGCTGTCTAAACAGCGGTGGCCTAAT
CTCCCGTAATTACGTCATTTAGACGTCGTTTCTCCCTTTTTTTTTCAAGC
AGAAATCATGTGAAGATTCCGCGGAGACCAACACCCGAAGGGCTACAATT
GGTCAATTCCAACAAGTCATCATTTTTCGTGTGCAATCGTTACGTACATG
TAGTTTCGAGTGAACAGCATCCCCCCCCGAATTCTACAGCATCGCCCTTC
AAACTTCTGATAATGGCACAATAACCCACCACCTTGATCCCCTTCGCCGG
CTTTTATGCGCCTGAAATCGTACGCCATTTTGGGGCGGGAAAAGATCCTT
AAAGAACATGGATCAGCAGGAGATAGGAGCCATGGCGGCGGGAATGAAGG
ACACGTCTGGTCCTACCATGATCTTCGCCGAGGTCCACGATTGGGTTGAA
GACAGAGGGGCGTCGGGCAGCGGGAACAAGGAGAAGCTCACGAAAGAGGA
AACGGATAAAGTCGGTGGTCGTCTGAGGGAGGTATGGTGTGGATATTCGC
CGTGGTGTACGCTGCGTAGGTGTTGGAGTGAACATGAATTTCTCGGTCAG
CAGAGAACAAGCTGGAGTAGGGTCGTGCCACGACAGGGAGGTACATTTTG
GAGCATGACATTCTTTCAAGAGTTGGTACTAAACATCTTGGCCATGTCAG
CTCTAGTCCTGGTGTGTACGAAAGCCGTCTGTGTATTTTGTTGAACAGCC
GCTGTCAACTCCAACAACAGGGGTCCCTTACCGCAGAAGACAGAGTACTC
CATATCTTGGGACGAGAGCTATTGAGCATCGTCGCGTGTGTGCACCATGG
CCTCCTCTAATGCTGCATAGATCAGACGGTAACTTCTCTGAGATTATGTC
AGAAAGGAAACGATAGCCTCAAAGTTTAGCAGTCAGCACTAGCTGTTAGG
TTGAATGGGTATTATTCCTTCTTCTGAGATTTTTTTGCCGGAGTTCGGCA
GGTGTAACGCCCAGCACCCTAAGCGTCACAACATGTGCCGCTTTGTTGAA
ATACAAGCGACACTTCACCCCATCGAAGCACTCGTATGTGTAAGAGCAAA
TCGCATTCGATTCAAGTATCGTCTGATATATTCAGGAATTGTGCCAAGTA
TTGTCTCGTGTCCGGTTCTGCAGCTTATACCGAATTCGCTTTTTTCGGTG
CTCACCTTTTGTTGACCTTTCCCAACAACACATGTGTTTGTCCAGCCCGC
CGCATCATCAGCACTCGGTAGGTAGTACATAATACGAGGATGTGGTTGTG
TTTTTGGTTCCATCCCTTCCCCCTAGTTTTTTCAGTTTGTGGACAAGTAA
CTTAGTAACTTGAAGATACTAAACATACCTCCATTTTGTTCCAACCCCTA
TCCCCCCCTCCTCCTCCGCTCCCCTGACATATCAAACATGAACCATGCTT
GTTGTGTCCATTTCACAGCTAGCTCAACTGGGCGGACTAGAGGTGACGGT
GTATCCGATCGAACAGGGGTCTGTGCTAGTCTCCACACAGAAAGGGTGGG
AAGGCAAAGAGGTGTGTACATGTGGTGATGAAATTGTTTGTGTTGGACAG
GTGGTGGACTGGAAAAGGTTATGCACTTATTTATTTTATCACTTGTCATT
TTTTGGACATCTTCAGGTATACACAAGCTTTGCGACAACTTTCGAACCGT
CATTAACACGCTGGAATGAATCGAGACCAGGTTTTGCGCGTAAGGCTGAC
TTTTCGTTCCCTCGGACACCCCAATGGAGGTAGAAGTGAAAATAGTGCAA
GACTGCTCAAAGATATCGGGTAATCATCCAGGTTCCTCCTGTACTGGATC
CGGCCCAGAGCGTTTTAGCCCTCGTGTTGTCCACCTGTGCCGAGCGAACT
GGTAATGACATTACTACTGGCAGTCAGTAGAAATGAGCGTTGCGTTGTGG
TTATTCATCTACATTATTTCATGGCGATGCTTTCGTATCTCGGAGCAGGT
TTTGGGTACTTTATTCAAGATGGTTTTCACAGCGTAGCCATGGCTTATTA
CACCTTTCACTACTACCACCAATTTAGGTGTTCGAATTCATCTATGAATC
CAGTACATATCCCCCCCCCCCCCTGCCCTCGGTTGGAAGATAAATAATTT
TTGTTCGCCCTCTCGATTTTTTTATTCGCCGTCTTTTCGTTGTGTTGTGC
GATGTTTTTTTTTTCCCTCAGATCGTGGACTTCCTCTTGTCACGCCCTGA
AGTGACCAAGGTATCTTGGAATAATCAAGAATTTCTACCTCCGAAAGAGG
AAGATGAACTGTGATGTATGCCAACGCTCCTTTAACCCAAAGGAGAGAGA
AAGTCTCTGTGATTGCACCCGGAGGAAATGTAACGCACGTAGCATTTGGC
GATGGGGCTCAGTCAGGGGCGAAGGGGGTGGTGGGTGAAGGAAGACGATC
TTCCGAATCTTGAATATTTTTTTGTCCCATGTCGAGTGACCTGAGACAAA
CGAGACAGGTAGGCTGTAATTTGTGATGTTCTTTTCGTTCATGTCTTGTT
TTGGTCGAGCTATTGGATTAGCTTCATTGTACTGCTAATAGTAGCATGCC
GTATGCAGTGGAGTTCGTTTTGGTTATATCATAGGGGTTTCGTTTCCGTC
GTTGTTGCTGTTGGTTCTGGTACTATTGCTGAAGGGTTGCAGTCGTACTA
CTCTCCACAACGCATGACCATGTTTGTTTTTCGGGGGCATCTTTTGCTTG
TGTAATGTGCTCACCTGTGCCGCGGGGTTCACCGCGATGTATGTGTATGA
CGAGCTGCTTAGACAGTGCTGTACTGTATTGTGTCCGACAACATTTAGAC
GATGTGCTGCACGTGCAATATTTCGGTACCTCGAGAGGGCATGCAGGTGT
ACGGTTACCCAGCCCACCTTTTTGTATTAAACTATAGCGCGGATGAGTTG
GTAGTGGAGACAGTAAAATGTTTACCGTGAGCAAACCAGCACTTTAGTCT
AGGGTAAATGAATGCCCCATGAGCCTTTCAGATGATGCATTTCTGTGCTG
TCGACTTGCTCGATACCATCGACAGCACAACATGCCAGTTCTACCGCGGT
CGCTGCGCTCTTGGATATGCAAGCTAGTGCATTACTCTTATTTATTCTGA
GGGCTACGCTTATCAGAGCACCCGGAATCTTTTCCCCCTACATCTGTCCG
ATTGGCACTCTGAAAATCGGAAAGTAATAAAATATACCATGCTATGATTG
TAAGGTGCAGGCGCTATAGTTCTGTTATGCCAGCTTTCGTTTCACCCCGA
CT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23:15284..23385+

>mRNA_H-paniculata_contig23.6162.1 ID=mRNA_H-paniculata_contig23.6162.1|Name=mRNA_H-paniculata_contig23.6162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig23:15284..23385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCTTGACGATCTAGAGAAACAGTGGGAAGAAGGCGACGAAGAAAA
CGAGCTCAGGAGCGAGATGGAGATCGAGAAAGAAAGGCTGGAGCGCCAGC
GCAACAAGGCCGCGAAGGGCAAGGCCTTCGATCCAAGATGAACCTTGACG
ATCTAGAGAAACAGTGGGAAGAAGGCGACGAAGAAAACGAGCTCAGGAGC
GAGATGGAGATCGAGAAAGAAAGGCTGGAGCGCCAGCGCAACAAGGCCGC
GAAGGGCAAGGCCTTCGATCCAAGATCCTTAAAGAACATGGATCAGCAGG
AGATAGGAGCCATGGCGGCGGGAATGAAGGACACGTCTGGTCCTACCATG
ATCTTCGCCGAGGTCCACGATTGGGTTGAAGACAGAGGGGCGTCGGGCAG
CGGGAACAAGGAGAAGCTCACGAAAGAGGAAACGGATAAAGTCGGTGGTC
GTCTGAGGGAGATCCTTAAAGAACATGGATCAGCAGGAGATAGGAGCCAT
GGCGGCGGGAATGAAGGACACGTCTGGTCCTACCATGATCTTCGCCGAGG
TCCACGATTGGGTTGAAGACAGAGGGGCGTCGGGCAGCGGGAACAAGGAG
AAGCTCACGAAAGAGGAAACGGATAAAGTCGGTGGTCGTCTGAGGGAGCT
AGCTCAACTGGGCGGACTAGAGGTGACGGTGTATCCGATCGAACAGGGGT
CTGTGCTAGTCTCCACACAGAAAGGGTGGGAAGGCAAAGAGCTAGCTCAA
CTGGGCGGACTAGAGGTGACGGTGTATCCGATCGAACAGGGGTCTGTGCT
AGTCTCCACACAGAAAGGGTGGGAAGGCAAAGAGATCGTGGACTTCCTCT
TGTCACGCCCTGAAGTGACCAAGGTATCTTGGAATAATCAAGAATTTCTA
CCTCCGAAAGAGGAAGATGAACTGTGAATCGTGGACTTCCTCTTGTCACG
CCCTGAAGTGACCAAGGTATCTTGGAATAATCAAGAATTTCTACCTCCGA
AAGAGGAAGATGAACTGTGA
back to top