mRNA_H-paniculata_contig22997.6160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22997.6160.1
Unique NamemRNA_H-paniculata_contig22997.6160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22997.6160.1 vs. uniprot
Match: D7FZA8_ECTSI (Ascorbate peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA8_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.300e-5
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 3 
Query:    3 VRLAWHDAGTFNKDSPEPWPR 65
            +RLAWHDAGTFNKDS EPWPR
Sbjct:   14 IRLAWHDAGTFNKDSAEPWPR 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22997.6160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZA8_ECTSI1.300e-590.48Ascorbate peroxidase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22997contigH-paniculata_contig22997:3614..4048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size246
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22997.6160.1prot_H-paniculata_contig22997.6160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22997 3635..3952 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.6658921-UTR-H-paniculata_contig22997:3613..36341622929643.6658921-UTR-H-paniculata_contig22997:3613..3634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22997 3614..3634 +
1691480948.4434676-UTR-H-paniculata_contig22997:3613..36341691480948.4434676-UTR-H-paniculata_contig22997:3613..3634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22997 3614..3634 +
1622929643.7589958-UTR-H-paniculata_contig22997:3952..40481622929643.7589958-UTR-H-paniculata_contig22997:3952..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22997 3953..4048 +
1691480948.469017-UTR-H-paniculata_contig22997:3952..40481691480948.469017-UTR-H-paniculata_contig22997:3952..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22997 3953..4048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.7144117-CDS-H-paniculata_contig22997:3634..36401622929643.7144117-CDS-H-paniculata_contig22997:3634..3640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22997 3635..3640 +
1691480948.45239-CDS-H-paniculata_contig22997:3634..36401691480948.45239-CDS-H-paniculata_contig22997:3634..3640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22997 3635..3640 +
1622929643.7327247-CDS-H-paniculata_contig22997:3829..39521622929643.7327247-CDS-H-paniculata_contig22997:3829..3952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22997 3830..3952 +
1691480948.4607332-CDS-H-paniculata_contig22997:3829..39521691480948.4607332-CDS-H-paniculata_contig22997:3829..3952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22997 3830..3952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22997.6160.1

>prot_H-paniculata_contig22997.6160.1 ID=prot_H-paniculata_contig22997.6160.1|Name=mRNA_H-paniculata_contig22997.6160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MPAPSTKTAQSRGLGESTASAVYHLLAFYLASSRLWLSRWRV*
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mRNA from alignment at H-paniculata_contig22997:3614..4048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22997.6160.1 ID=mRNA_H-paniculata_contig22997.6160.1|Name=mRNA_H-paniculata_contig22997.6160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig22997:3614..4048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGCGCCTCGCATGGCACGATGCCGGTGAGAGATGGTGTTACTTGTGA
TGCGTCGACAGTTATGATGTGTCTATTATACGTTTTTGTGCAGGCAGATT
GTTCATCAAAGGTCGCTAATGGTTGGTCTAATCAAGGGGAAAACCGCGTT
CTCCTCCTGTTGTCTCTTCGTACTGTTGAAAACCGCTGGACTGCTTTGCG
TTTCCTGACTGTACAGGCACCTTCAACAAAGACAGCCCAGAGCCGTGGCC
TAGGTGAGAGCACTGCGTCCGCGGTGTACCATCTACTTGCCTTCTATTTG
GCGAGTAGTAGGCTATGGCTATCCCGGTGGCGTGTATAACTCGAACCCTC
GAAAAGCACATGAACGTGTTTTCGCCTATTGTTCTTTTGCATCAATAACA
TACCATGTTCGTTTTACTCGCAATTTTGATGGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig22997:3614..4048+

>mRNA_H-paniculata_contig22997.6160.1 ID=mRNA_H-paniculata_contig22997.6160.1|Name=mRNA_H-paniculata_contig22997.6160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig22997:3614..4048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGATGCCGGCACCTTCAACAAAGACAGCCCAGAGCCGTGGCCTAGG
TGAGAGCACTGCGTCCGCGGTGTACCATCTACTTGCCTTCTATTTGGCGA
GTAGTAGGCTATGGCTATCCCGGTGGCGTGTATAAGCACCTTCAACAAAG
ACAGCCCAGAGCCGTGGCCTAGGTGAGAGCACTGCGTCCGCGGTGTACCA
TCTACTTGCCTTCTATTTGGCGAGTAGTAGGCTATGGCTATCCCGGTGGC
GTGTATAA
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