mRNA_H-paniculata_contig22946.6141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22946.6141.1
Unique NamemRNA_H-paniculata_contig22946.6141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: D8LDY8_ECTSI (Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.970e-25
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRESG+R+ STFSSGALFVFFVPY+IM CLTYG+AVPSGLFVPSLLSGAAFG
Sbjct:  360 QLFHFRESGRREISTFSSGALFVFFVPYTIMGCLTYGIAVPSGLFVPSLLSGAAFG 415
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A7S2YMG2_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMG2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.610e-21
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+G  D STFSSGALF+FF+PY ++A LTYG+AVPSGLFVPSLLSGAAFG
Sbjct:  383 QLFHFREAGADDVSTFSSGALFMFFIPYIMLATLTYGIAVPSGLFVPSLLSGAAFG 438
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 8.600e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+G  D STFSSGALF FFVPY  MA +TYG+AVPSGLFVPSLLSGAAFG
Sbjct:  512 QLFHFREAGASDMSTFSSGALFFFFVPYIAMATITYGIAVPSGLFVPSLLSGAAFG 567
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A7R9U7Y3_9STRA (Chloride channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRESG  + +TFSSGAL +FF PY IM C+TYG+AVPSGLFVPSLLSGAAFG
Sbjct:  496 QLFHFRESGDDENNTFSSGALLLFFFPYIIMGCVTYGLAVPSGLFVPSLLSGAAFG 551
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A7S2UST4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UST4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-20
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE G+ D  TFSSGALFVFF+PY  +AC TYG+ VPSGLFVP LLSGAAFG
Sbjct:  142 QLFHFREGGEADVQTFSSGALFVFFLPYICLACWTYGLGVPSGLFVPCLLSGAAFG 197
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: B8LCA7_THAPS (Chloride channel protein (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8LCA7_THAPS)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-20
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+G+ DTSTFSS ALF+FF+PY  +A L YG+AVPSGLFVPSLLSGAAFG
Sbjct:  360 QLFHFRETGETDTSTFSSAALFLFFIPYITLASLVYGIAVPSGLFVPSLLSGAAFG 415
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: K0R8R8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8R8_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-20
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+G+ DTSTFSS ALF+FF+PY  +A L YG+AVPSGLFVPSLLSGAAFG
Sbjct:  641 QLFHFRETGETDTSTFSSAALFLFFIPYITLASLVYGIAVPSGLFVPSLLSGAAFG 696
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A7S4S7C7_9STRA (Chloride channel protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7C7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-20
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+GQ D+STFSS ALF+FFVPY  MA + YG+A+PSGLFVPSLLSGAAFG
Sbjct:  526 QLFHFREAGQDDSSTFSSAALFLFFVPYVFMATIVYGIAIPSGLFVPSLLSGAAFG 581
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BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 90.9 bits (224), Expect = 4.640e-20
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE+G  D+STFSS ALF+FFVPY  +A +TYG+AVPSGLFVPSLLSGAAFG
Sbjct:   85 QLFHFREAGADDSSTFSSAALFLFFVPYIALASITYGIAVPSGLFVPSLLSGAAFG 140
[Close]
BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-19
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLLSGAAFG 168
            QLFHFRE G  D STFSSGALF+FFVPY +M+ + YG+AVPSGLFVPSLL+GAAFG
Sbjct:  445 QLFHFREGGGEDNSTFSSGALFLFFVPYIMMSSVVYGIAVPSGLFVPSLLAGAAFG 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22946.6141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDY8_ECTSI6.970e-2589.29Phatr1_ua_kg.chr_17000030 n=1 Tax=Ectocarpus silic... [more]
A0A7S2YMG2_9STRA4.610e-2180.36Chloride channel protein n=1 Tax=Amphiprora paludo... [more]
A0A1Z5JAK4_FISSO8.600e-2182.14Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A7R9U7Y3_9STRA1.170e-2078.57Chloride channel protein n=1 Tax=Pinguiococcus pyr... [more]
A0A7S2UST4_9STRA1.180e-2076.79Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B8LCA7_THAPS1.600e-2078.57Chloride channel protein (Fragment) n=2 Tax=Thalas... [more]
K0R8R8_THAOC1.600e-2078.57Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4S7C7_9STRA1.600e-2078.57Chloride channel protein n=3 Tax=Ditylum brightwel... [more]
A0A7S1D5H2_CYCTE4.640e-2078.57Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]
A0A1E7FXI3_9STRA1.040e-1976.79Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22946contigH-paniculata_contig22946:3717..3884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.9e-20
Seed eggNOG ortholog2880.D8LDY8
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categorysignal anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.7913036-CDS-H-paniculata_contig22946:3716..38841622929641.7913036-CDS-H-paniculata_contig22946:3716..3884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22946 3717..3884 +
1691480947.7729266-CDS-H-paniculata_contig22946:3716..38841691480947.7729266-CDS-H-paniculata_contig22946:3716..3884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22946 3717..3884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22946.6141.1prot_H-paniculata_contig22946.6141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22946 3717..3884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22946.6141.1

>prot_H-paniculata_contig22946.6141.1 ID=prot_H-paniculata_contig22946.6141.1|Name=mRNA_H-paniculata_contig22946.6141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
QLFHFRESGQRDTSTFSSGALFVFFVPYSIMACLTYGMAVPSGLFVPSLL
SGAAFG
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mRNA from alignment at H-paniculata_contig22946:3717..3884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22946.6141.1 ID=mRNA_H-paniculata_contig22946.6141.1|Name=mRNA_H-paniculata_contig22946.6141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig22946:3717..3884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTTTCCACTTTCGAGAGTCGGGTCAGCGGGATACCTCGACCTTCTC
CTCCGGAGCCCTGTTCGTTTTTTTCGTGCCATATTCCATTATGGCCTGCC
TCACCTATGGCATGGCAGTGCCTAGTGGACTCTTCGTGCCTTCGCTGCTT
TCAGGCGCGGCGTTTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22946:3717..3884+

>mRNA_H-paniculata_contig22946.6141.1 ID=mRNA_H-paniculata_contig22946.6141.1|Name=mRNA_H-paniculata_contig22946.6141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig22946:3717..3884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTTTCCACTTTCGAGAGTCGGGTCAGCGGGATACCTCGACCTTCTC
CTCCGGAGCCCTGTTCGTTTTTTTCGTGCCATATTCCATTATGGCCTGCC
TCACCTATGGCATGGCAGTGCCTAGTGGACTCTTCGTGCCTTCGCTGCTT
TCAGGCGCGGCGTTTGGTCAGCTTTTCCACTTTCGAGAGTCGGGTCAGCG
GGATACCTCGACCTTCTCCTCCGGAGCCCTGTTCGTTTTTTTCGTGCCAT
ATTCCATTATGGCCTGCCTCACCTATGGCATGGCAGTGCCTAGTGGACTC
TTCGTGCCTTCGCTGCTTTCAGGCGCGGCGTTTGGT
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