mRNA_H-paniculata_contig22901.6124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22901.6124.1
Unique NamemRNA_H-paniculata_contig22901.6124.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22901.6124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22901contigH-paniculata_contig22901:2852..3310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22901.6124.1prot_H-paniculata_contig22901.6124.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22901 2959..3261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.4232903-UTR-H-paniculata_contig22901:2851..29581622929639.4232903-UTR-H-paniculata_contig22901:2851..2958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22901 2852..2958 +
1691480946.9664853-UTR-H-paniculata_contig22901:2851..29581691480946.9664853-UTR-H-paniculata_contig22901:2851..2958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22901 2852..2958 +
1622929639.444789-UTR-H-paniculata_contig22901:3261..33101622929639.444789-UTR-H-paniculata_contig22901:3261..3310Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22901 3262..3310 +
1691480946.9869852-UTR-H-paniculata_contig22901:3261..33101691480946.9869852-UTR-H-paniculata_contig22901:3261..3310Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22901 3262..3310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.4339206-CDS-H-paniculata_contig22901:2958..32611622929639.4339206-CDS-H-paniculata_contig22901:2958..3261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22901 2959..3261 +
1691480946.9772344-CDS-H-paniculata_contig22901:2958..32611691480946.9772344-CDS-H-paniculata_contig22901:2958..3261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22901 2959..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22901.6124.1

>prot_H-paniculata_contig22901.6124.1 ID=prot_H-paniculata_contig22901.6124.1|Name=mRNA_H-paniculata_contig22901.6124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MCPPQHTPTIISATSTCGHRTQHRETKADSEYGNAYGAATISNSDQRIQN
MCACVHMSTPKQKSASTFRAATKSNNDKNRDHSVCYTRRDNSMKTCVCPP
*
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mRNA from alignment at H-paniculata_contig22901:2852..3310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22901.6124.1 ID=mRNA_H-paniculata_contig22901.6124.1|Name=mRNA_H-paniculata_contig22901.6124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at H-paniculata_contig22901:2852..3310+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCCTTTTCGTGTAGGCACCGAATCCAGCACCGCGAAAAAATAAAGCAG
AATAACGGTGTGCAGACGATGTACTGTGCCATAGCTAACGGTGCTTTATG
AACATGCATGTGCCCACCGCAACACACCCCAACAATAATCAGCGCCACAT
CTACGTGCGGCCACCGAACCCAGCACCGGGAAACGAAAGCAGATTCAGAG
TACGGAAACGCGTACGGTGCTGCCACCATATCTAACTCTGACCAACGAAT
CCAAAACATGTGCGCGTGTGTCCATATGAGCACCCCGAAACAAAAATCAG
CATCAACTTTCAGAGCGGCCACCAAATCCAACAACGATAAAAACAGAGAC
CACAGTGTGTGCTACACCAGACGTGATAACTCTATGAAAACATGCGTATG
CCCTCCATAACACGCTAATATTAAAAAAAATCCACCAACCTCCCCCCGTG
GCCACCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22901:2852..3310+

>mRNA_H-paniculata_contig22901.6124.1 ID=mRNA_H-paniculata_contig22901.6124.1|Name=mRNA_H-paniculata_contig22901.6124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig22901:2852..3310+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCCACCGCAACACACCCCAACAATAATCAGCGCCACATCTACGTG
CGGCCACCGAACCCAGCACCGGGAAACGAAAGCAGATTCAGAGTACGGAA
ACGCGTACGGTGCTGCCACCATATCTAACTCTGACCAACGAATCCAAAAC
ATGTGCGCGTGTGTCCATATGAGCACCCCGAAACAAAAATCAGCATCAAC
TTTCAGAGCGGCCACCAAATCCAACAACGATAAAAACAGAGACCACAGTG
TGTGCTACACCAGACGTGATAACTCTATGAAAACATGCGTATGCCCTCCA
TAAATGTGCCCACCGCAACACACCCCAACAATAATCAGCGCCACATCTAC
GTGCGGCCACCGAACCCAGCACCGGGAAACGAAAGCAGATTCAGAGTACG
GAAACGCGTACGGTGCTGCCACCATATCTAACTCTGACCAACGAATCCAA
AACATGTGCGCGTGTGTCCATATGAGCACCCCGAAACAAAAATCAGCATC
AACTTTCAGAGCGGCCACCAAATCCAACAACGATAAAAACAGAGACCACA
GTGTGTGCTACACCAGACGTGATAACTCTATGAAAACATGCGTATGCCCT
CCATAA
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