mRNA_H-paniculata_contig229.6119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig229.6119.1
Unique NamemRNA_H-paniculata_contig229.6119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig229.6119.1 vs. uniprot
Match: D7FSG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.590e-6
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:  378 WDSRSKSDDTPVTKADDRADELIRTRSLQAYPDIPM 485
            W+SRSKSDDTPVTKAD  ADELI +R   AYPDIP+
Sbjct:   39 WESRSKSDDTPVTKADVMADELICSRLRSAYPDIPI 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig229.6119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSG3_ECTSI3.590e-675.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig229contigH-paniculata_contig229:8379..8867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig229.6119.1prot_H-paniculata_contig229.6119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig229 8418..8774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.4277058-UTR-H-paniculata_contig229:8378..84171622929638.4277058-UTR-H-paniculata_contig229:8378..8417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 8379..8417 +
1691480946.554108-UTR-H-paniculata_contig229:8378..84171691480946.554108-UTR-H-paniculata_contig229:8378..8417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 8379..8417 +
1622929638.4616897-UTR-H-paniculata_contig229:8774..88671622929638.4616897-UTR-H-paniculata_contig229:8774..8867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 8775..8867 +
1691480946.5724547-UTR-H-paniculata_contig229:8774..88671691480946.5724547-UTR-H-paniculata_contig229:8774..8867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 8775..8867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.4431155-CDS-H-paniculata_contig229:8417..87741622929638.4431155-CDS-H-paniculata_contig229:8417..8774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig229 8418..8774 +
1691480946.5642776-CDS-H-paniculata_contig229:8417..87741691480946.5642776-CDS-H-paniculata_contig229:8417..8774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig229 8418..8774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig229.6119.1

>prot_H-paniculata_contig229.6119.1 ID=prot_H-paniculata_contig229.6119.1|Name=mRNA_H-paniculata_contig229.6119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MKDSTYPSCPKFLKVGILHPSENVFYTKDRMSIIKVRVLTLCSPPFSYFS
LPLVPRKGIVRWPLTTQAVTAPGLRKSTKSKRDPLACAAFMFTSCMVSNT
QVLKSSQSILYARMGMSG*
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mRNA from alignment at H-paniculata_contig229:8379..8867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig229.6119.1 ID=mRNA_H-paniculata_contig229.6119.1|Name=mRNA_H-paniculata_contig229.6119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig229:8379..8867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCCCGGTACTACGTACTCTCCATCTTCACCCCTAATCATGAAGGATAG
TACGTATCCTTCATGTCCCAAATTTCTAAAAGTTGGCATCTTGCATCCTT
CCGAAAACGTGTTCTACACAAAGGATCGTATGTCAATAATAAAAGTTCGA
GTACTCACTTTATGTTCTCCGCCGTTCTCGTACTTCAGCCTGCCGCTCGT
GCCTCGTAAGGGTATCGTACGCTGGCCATTAACCACTCAAGCTGTAACAG
CACCAGGTCTTCGCAAATCAACAAAGAGCAAACGGGACCCGCTGGCATGT
GCTGCCTTCATGTTCACCAGCTGTATGGTTTCAAACACTCAAGTGTTAAA
GTCTTCACAGTCCATTTTATACGCTCGCATGGGAATGTCCGGGTAGGCCT
GAAGGGATCTCGTCCGGATAAGCTCGTCTGCCCTATCATCTGCTTTTGTG
ACCGGCGTATCGTCTGACTTAGATCGGCTGTCCCAACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig229:8379..8867+

>mRNA_H-paniculata_contig229.6119.1 ID=mRNA_H-paniculata_contig229.6119.1|Name=mRNA_H-paniculata_contig229.6119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig229:8379..8867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGATAGTACGTATCCTTCATGTCCCAAATTTCTAAAAGTTGGCAT
CTTGCATCCTTCCGAAAACGTGTTCTACACAAAGGATCGTATGTCAATAA
TAAAAGTTCGAGTACTCACTTTATGTTCTCCGCCGTTCTCGTACTTCAGC
CTGCCGCTCGTGCCTCGTAAGGGTATCGTACGCTGGCCATTAACCACTCA
AGCTGTAACAGCACCAGGTCTTCGCAAATCAACAAAGAGCAAACGGGACC
CGCTGGCATGTGCTGCCTTCATGTTCACCAGCTGTATGGTTTCAAACACT
CAAGTGTTAAAGTCTTCACAGTCCATTTTATACGCTCGCATGGGAATGTC
CGGGTAGATGAAGGATAGTACGTATCCTTCATGTCCCAAATTTCTAAAAG
TTGGCATCTTGCATCCTTCCGAAAACGTGTTCTACACAAAGGATCGTATG
TCAATAATAAAAGTTCGAGTACTCACTTTATGTTCTCCGCCGTTCTCGTA
CTTCAGCCTGCCGCTCGTGCCTCGTAAGGGTATCGTACGCTGGCCATTAA
CCACTCAAGCTGTAACAGCACCAGGTCTTCGCAAATCAACAAAGAGCAAA
CGGGACCCGCTGGCATGTGCTGCCTTCATGTTCACCAGCTGTATGGTTTC
AAACACTCAAGTGTTAAAGTCTTCACAGTCCATTTTATACGCTCGCATGG
GAATGTCCGGGTAG
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