mRNA_H-paniculata_contig22896.6116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22896.6116.1
Unique NamemRNA_H-paniculata_contig22896.6116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: D8LRE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.310e-7
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K VLELGCG+GLPGVAAA++GA+EVILTDM
Sbjct:   59 KRVLELGCGVGLPGVAAAVVGATEVILTDM 88
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A225WW48_9STRA (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WW48_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.970e-7
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDMV--SGPVLVEKIVL 126
            K V+ELGCGIG+PG+AAA LGA EV+LTDMV  +G +L+ ++++
Sbjct:  114 KRVIELGCGIGVPGLAAAALGAKEVVLTDMVRYAGDILLTRLMI 157
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A1V9YD64_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD64_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.530e-7
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG++AALLGASEV+LTDM
Sbjct:  122 KRVIELGCGIGVPGLSAALLGASEVVLTDM 151
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A067CTV1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTV1_SAPPC)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-6
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG++AALLGAS+V+LTDM
Sbjct:  108 KRVIELGCGIGVPGISAALLGASDVVLTDM 137
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A662WGH0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGH0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.440e-6
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDMV 93
            K V+ELGCGIG+PG+AAA+LGA EV+LTDMV
Sbjct:  118 KRVVELGCGIGVPGLAAAVLGAKEVLLTDMV 148
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A3F2RQW7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQW7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.270e-6
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG+AAA LGA EVILTDM
Sbjct:  119 KRVIELGCGIGVPGLAAAALGAKEVILTDM 148
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A3M6V6P9_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6P9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-6
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG+AAA LGA EVILTDM
Sbjct:  121 KRVIELGCGIGVPGLAAAALGAKEVILTDM 150
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BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A6A3LU63_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LU63_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.780e-6
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG+AAA LGA EV+LTDM
Sbjct:  117 KRVIELGCGIGVPGLAAAALGAKEVVLTDM 146
[Close]
BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A662YJ32_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ32_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.830e-6
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG+AAA+LGA EV+LTDM
Sbjct:  118 KRVVELGCGIGVPGLAAAVLGAEEVLLTDM 147
[Close]
BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Match: A0A0W8CG62_PHYNI (Lysine methyltransferase METTL21D protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CG62_PHYNI)

HSP 1 Score: 50.4 bits (119), Expect = 5.860e-6
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 KIVLELGCGIGLPGVAAALLGASEVILTDM 90
            K V+ELGCGIG+PG+AAA LGA EV+LTDM
Sbjct:  117 KRVIELGCGIGVPGLAAAALGAKEVVLTDM 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22896.6116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRE1_ECTSI2.310e-783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A225WW48_9STRA6.970e-759.092OG-FeII_Oxy_2 domain-containing protein n=1 Tax=P... [more]
A0A1V9YD64_9STRA8.530e-780.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CTV1_SAPPC1.110e-676.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A662WGH0_9STRA2.440e-677.42Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RQW7_9STRA4.270e-680.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6V6P9_9STRA4.570e-680.00Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A6A3LU63_9STRA5.780e-676.67Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A662YJ32_9STRA5.830e-676.67Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0W8CG62_PHYNI5.860e-676.67Lysine methyltransferase METTL21D protein n=8 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22896contigH-paniculata_contig22896:3532..3669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-21_002730.1
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.2444224-CDS-H-paniculata_contig22896:3531..36691622929638.2444224-CDS-H-paniculata_contig22896:3531..3669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22896 3532..3669 +
1691480946.5158067-CDS-H-paniculata_contig22896:3531..36691691480946.5158067-CDS-H-paniculata_contig22896:3531..3669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22896 3532..3669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22896.6116.1prot_H-paniculata_contig22896.6116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22896 3532..3669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22896.6116.1

>prot_H-paniculata_contig22896.6116.1 ID=prot_H-paniculata_contig22896.6116.1|Name=mRNA_H-paniculata_contig22896.6116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
KIVLELGCGIGLPGVAAALLGASEVILTDMVSGPVLVEKIVLSRR*
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mRNA from alignment at H-paniculata_contig22896:3532..3669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22896.6116.1 ID=mRNA_H-paniculata_contig22896.6116.1|Name=mRNA_H-paniculata_contig22896.6116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig22896:3532..3669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATCGTGTTGGAGTTGGGGTGTGGAATAGGCTTGCCAGGAGTGGCTGC
GGCGTTGCTGGGCGCGAGTGAGGTCATCCTCACGGACATGGTCAGTGGTC
CAGTACTCGTAGAAAAAATTGTGCTTTCTCGGCGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22896:3532..3669+

>mRNA_H-paniculata_contig22896.6116.1 ID=mRNA_H-paniculata_contig22896.6116.1|Name=mRNA_H-paniculata_contig22896.6116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig22896:3532..3669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATCGTGTTGGAGTTGGGGTGTGGAATAGGCTTGCCAGGAGTGGCTGC
GGCGTTGCTGGGCGCGAGTGAGGTCATCCTCACGGACATGGTCAGTGGTC
CAGTACTCGTAGAAAAAATTGTGCTTTCTCGGCGTTGAAAAATCGTGTTG
GAGTTGGGGTGTGGAATAGGCTTGCCAGGAGTGGCTGCGGCGTTGCTGGG
CGCGAGTGAGGTCATCCTCACGGACATGGTCAGTGGTCCAGTACTCGTAG
AAAAAATTGTGCTTTCTCGGCGTTGA
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