mRNA_H-paniculata_contig2285.6101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2285.6101.1
Unique NamemRNA_H-paniculata_contig2285.6101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2285.6101.1 vs. uniprot
Match: D8LKZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ0_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 2.190e-109
Identity = 159/245 (64.90%), Postives = 187/245 (76.33%), Query Frame = 3
Query:  276 PRVHPWCSVEDCTERPLRQFMASSSKQIMFMCKTHFTNVPSQTREGWKQYRGTRTFPETKIAVECRPGPNRGNGVTH---------SEADPGYTNPPEDDK-IRGTTKNSMWPGKLYNVLYQVWNAHAERRKMETGDSHFTSIDRAELVPEAARVLREQGHPDMAVILENTTEGARKVIHSRVIAKYLKHRENFILKLRSSQLDPQEIADWDVALTAAQHHVNLQPIREREREMHPTTSNSSITH 980
            P  +PWCSV  CTERPLRQ+ A+SSKQIMFMCKTHF  VP  TREGWKQYRGTRTFPE++IA  CRPGP RG G            SE DPGYTN P+D+K  RG TK+++WPGK+YNVLYQVWNA AE++K+ +GD + TS DRA LVP+AA VLREQGHP+MA+IL+NTTEGARKVIHSRV+AKYLK+RE F  KLR+  LDP EIA+WD AL AAQHH +L P   RER+   +    S+ H
Sbjct:    2 PECYPWCSVAGCTERPLRQYTAASSKQIMFMCKTHFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGLGAAXXXXXXXXXXSEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNVLYQVWNAQAEQKKISSGDGYMTSSDRAALVPQAANVLREQGHPEMAIILDNTTEGARKVIHSRVLAKYLKNREIFSAKLRNIGLDPTEIAEWDAALVAAQHHADLAP---RERDQPHSAVPLSLPH 243          
BLAST of mRNA_H-paniculata_contig2285.6101.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 3.410e-86
Identity = 135/214 (63.08%), Postives = 162/214 (75.70%), Query Frame = 3
Query:  360 MFMCKTHFTNVPSQTREGWKQYRGTRTFPETKIAVECRPGPNRGNGVTH------SEADPGYTNPPEDDK-IRGTTKNSMWPGKLYNVLYQVWNAHAERRKMETGDSHFTSIDRAELVPEAARVLREQGHPDMAVILENTTEGARKVIHSRVIAKYLKHRENFILKLRSSQLDPQEIADWDVALTAAQHHVNLQPIREREREMHPTTSNSSITH 980
            MFMCKT F  VP  TREGWKQYRGTRTFPE++IA  CRPGP RG+G         SE DPG+TN P+D+K  RG T +++WPGK+YNVLYQVWNA AE++K+ +GD + TS DRA LVP+AA VLR+QGHP+MA IL+NTTEGARKVI SRV+AKYLK+RE F  KLR+  LDP EIA+WDVAL AAQHH +L P   RER+   +    S+ H
Sbjct:    1 MFMCKTRFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGHGAAXXXXXXXSEVDPGHTNHPDDEKGNRGPTNSALWPGKVYNVLYQVWNAQAEQKKISSGDGYMTSSDRAALVPQAANVLRDQGHPEMATILDNTTEGARKVIRSRVLAKYLKNREVFSAKLRNIGLDPTEIAEWDVALVAAQHHADLAP---RERDQPHSAVPLSLPH 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2285.6101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKZ0_ECTSI2.190e-10964.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE3.410e-8663.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2285contigH-paniculata_contig2285:10933..18409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1039
Cds size867
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2285.6101.1prot_H-paniculata_contig2285.6101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2285 10933..18239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.8232882-CDS-H-paniculata_contig2285:10932..111521622929636.8232882-CDS-H-paniculata_contig2285:10932..11152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 10933..11152 -
1691480945.9022925-CDS-H-paniculata_contig2285:10932..111521691480945.9022925-CDS-H-paniculata_contig2285:10932..11152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 10933..11152 -
1622929636.8415368-CDS-H-paniculata_contig2285:11644..116851622929636.8415368-CDS-H-paniculata_contig2285:11644..11685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 11645..11685 -
1691480945.910208-CDS-H-paniculata_contig2285:11644..116851691480945.910208-CDS-H-paniculata_contig2285:11644..11685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 11645..11685 -
1622929636.856768-CDS-H-paniculata_contig2285:13527..136921622929636.856768-CDS-H-paniculata_contig2285:13527..13692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 13528..13692 -
1691480945.9199226-CDS-H-paniculata_contig2285:13527..136921691480945.9199226-CDS-H-paniculata_contig2285:13527..13692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 13528..13692 -
1622929636.8736737-CDS-H-paniculata_contig2285:14820..150751622929636.8736737-CDS-H-paniculata_contig2285:14820..15075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 14821..15075 -
1691480945.9349809-CDS-H-paniculata_contig2285:14820..150751691480945.9349809-CDS-H-paniculata_contig2285:14820..15075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 14821..15075 -
1622929636.8892848-CDS-H-paniculata_contig2285:18053..182391622929636.8892848-CDS-H-paniculata_contig2285:18053..18239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 18054..18239 -
1691480945.9475143-CDS-H-paniculata_contig2285:18053..182391691480945.9475143-CDS-H-paniculata_contig2285:18053..18239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2285 18054..18239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.9051049-UTR-H-paniculata_contig2285:18239..184091622929636.9051049-UTR-H-paniculata_contig2285:18239..18409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2285 18240..18409 -
1691480945.9631784-UTR-H-paniculata_contig2285:18239..184091691480945.9631784-UTR-H-paniculata_contig2285:18239..18409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2285 18240..18409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2285.6101.1

>prot_H-paniculata_contig2285.6101.1 ID=prot_H-paniculata_contig2285.6101.1|Name=mRNA_H-paniculata_contig2285.6101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
MMALNQLGSPLPGATHYHDIDDVDDDMSDRMSRNCPRVHPWCSVEDCTER
PLRQFMASSSKQIMFMCKTHFTNVPSQTREGWKQYRGTRTFPETKIAVEC
RPGPNRGNGVTHSEADPGYTNPPEDDKIRGTTKNSMWPGKLYNVLYQVWN
AHAERRKMETGDSHFTSIDRAELVPEAARVLREQGHPDMAVILENTTEGA
RKVIHSRVIAKYLKHRENFILKLRSSQLDPQEIADWDVALTAAQHHVNLQ
PIREREREMHPTTSNSSITHPHDDGTGMVSGVGPGGSGT
back to top

mRNA from alignment at H-paniculata_contig2285:10933..18409-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2285.6101.1 ID=mRNA_H-paniculata_contig2285.6101.1|Name=mRNA_H-paniculata_contig2285.6101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7477bp|location=Sequence derived from alignment at H-paniculata_contig2285:10933..18409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAGGGGTATCAAGGACGCGTGTGTGTGCTGCGGTGTCCAGCTTCGCC TGACACCTGAAGGTGTTTCTGTGGGCAGAAATTTACCGTGGTTGTCTTTT TCAATTGTCGGGGTTGGTCTCGTGTCCTTTTATTGTACCATTTGTCCGAG GTTTTTGAGAGCTAAGACATATGATGGCCCTCAACCAATTGGGAAGCCCG TTGCCTGGGGCGACCCATTATCACGACATCGACGATGTCGACGATGATAT GAGTGACAGAATGTCGCGGAACTGCCCAAGGGTGCATCCTTGGTGTTCGG TGGAGGACTGCACGGAGCGCCCTTTGAGACAGTTCATGGCATCCTCGAGC AAACAGGTACTGCTTATAGGCATAGTATTATCCCCGCACTGTGTGTACTG TCTATCGTTGTGCTGTCAGTGGCTAATTATGGGTACCAAGCTCCAGACGA TTCTCGCCTGCGTAGCTGCAGTGATTGATTATTGATTACACAACGTGACC TGTACCGGGCCAGAGACGATGCAGTACAGTATAGTAGTGTAACGTTGGTG CACACCAACAAAGACTTAATGGGCTTGATATGATTCGCGATGTGTGCTTG TTGTTGGGGCTCTTTTTTTGCTTTATATTGGTTCAGCTGTCCCGTCTCTT GAATTCGAATTGTTCTCGTGTAGCAGGTGTGTATACTCCCTTTGTATGTT CATGAAAAACTGAACCAGTCACTCCAACTCTAGAATATAGACTTCTTTTG TTCTCTATTAATACATACAGTAAGCGAGCCGGTGTCTCCGTTGGTGCAGT CCTTAGTCCTTGACATGATATGCAACCTTCCCACGAGCGAGTTCGACAAA CGCGCAGCCGTCTATCGTGGGATGCTATGTTCGACTTTAGTCGCGTGATC GGTTGCTGTACTGCCTCGCGCCGCGACTGCACGACCGAAGGGTATGGCGT TGTCCAGTCTGGTGAACTGAATTGATTTGAGAAACATGGCATGTCAGTGC GGAGTTTGTTTGGGAGAGGTCTGACTTGTATTACAGCGAACAGGTCTAAC ACCAAAAGGTAGATGGAAGAGCGATTATAGAGATCGGACGCGTAGTGATG TACCGGAAAAGCAGCGGGAAAGTCGTTGAGTTACGGGGTTGTCGTGAAGT TGTACTCAGCAGAGATAGATGCCAATGTCAACAGACACTGCAGTGAGTCC CACTTTTGATTATAATTTGAAGCATATCGGCTGTAGGCATATTGTTATCG ATGATCGATCGAGGAAGTGGCGAAAGTCACGTCTGTCGTTGTTTTTTCTA TCATCTCATGTTTGGCAGTGATTCTGGGACTGAAACCCTTGTTGTATGAA ATATCCCGTTTCCAGCTAGCGCTCCCTAATAGACGCCCGACATTTGGTAC ACTGTTGACTCGTTGCAGTCGAAACATCGATCTTATGTGGTTCGGAATAA TTTAAAATGGGGTTTTTCGAATTGTGCAAGGCGCCAACAACGAGTGTATT TACAGGTCAGGGCATACTCGAGAACCCTTTGCTGACTTGGACTGCAGCTT GCCTCTGAATGCGATATAAAAGCCAAAAGAAATGGAGTAATGATTCGGGA TCGTTTTTCGCATGAAACGTGCCAGTGTTTTTTCCAATGGTAAAGTTGTC ATTATCCAATTATTTTTTCACACTGTGGTCTCCTCCACAAGGTGGCTCTC TCTCTCCCTCTCGGCGTACCGCTTCGTTTAGAATATAGGCTCCGATCTTG GCCATGACGCTCAAAAATAAATTGCTGCAAACAATCAAGGCGTCTCTGCC TGACGGCGCTGAGTTTATCAGAGCTGAGCGGGGAACCAACGCCGCGAAAT GCATCTGCTTGAACATATCGATTAAGCTAGATTCGACGGAATACACGCGC GCGCTGCGGAGGGAACATGACCGCACCGAATCGTTGGGTAGAAGTCTTAA GAACAAACAAGGGCGGGTATTTGTCACACGCCTGAGCGTGTACGATTGGT GACAGTGTTCAAGATAGCGCAGTGGGTCGCCTTCCCAATACATTACACAG CTAACTGCAGTGTTCCATCCTTGTTGTTATACCACTAAATTGTAGTACAG ACAGTCGATTGGTGACGTTTGGTTGATAGCACCAGATTTTACAACGATCC ACTCAATTACAGTATAGACAGTCGATTTTTTATATTTCATTAGAAGTACC CAAATGAAAAGATGATATAAAATAATGGATTTCTCGGTGTCTGGCTATGA AAATAACTGAATCTCAGCATCACTCGTTAATATTTTTGCGCTCTATTTCA ACAAGAAAACGAAGACACATGTTCTGGAAAATTACACCTTCGTGGAAACC TCTAGAAACAGTTTCGAATATTCTACGACATTCGGAAGGCGTGGAGGTTT TTTACGAGGGCTCCATTTTTTTTTTCGATTTTTTTCGCCAATCCCATCGC AAGCTATGTTTGCTTAATTATTTTCTGCTACTTAACGATTAGTATATTAC TCGTCGTGACCATGAAAACCCTGAAAATCGGTGTATATCATTCCATGACA ATATCAATGTCACTCTGATATTTCGTCCGATATGACACATCATATCGGGT GATAGATGCCCTGATGTGGCCAGGATCCAATATGCGCCCCTGAGTTATGT GGCACTCTACTGTGGCATCGAGAGATGGCACCGTTTGTATCCAGTCCTTG ATGAAAAATGTTTCTATCGTGTCAGTATCATCTGGTATGATACCAAATGT TATTGACTTTTATTGAAATTGATTGGCTTGATTATGGCATGCTGTCTGTT GGTGTTGTGGATGTATAACACCCCTCACAGCACACACACCCAAACCCCCC AAAAACCTTCCCTTAAGTCTAGTCAAAAACGTTCCCTTACTGAAACCAAG TCAAGCATTTCGTATCATTGATCCGTAACCTTTTGTGTGATGCATCAGGT TGATACTGGCATGACACAAATATCATCAACGAAGCGATATGATTGAATCA ATACCATATATCATATCTTCATATTGGGCTAATTGTCGTGCCCGATATGC ATCAGTAATCGGCAGACTGGAGGCTATATTTTGTTGCACGAATTCAAGGT CAACACTTGGCGAACCAATACGTAACGTCTGTGATTTGGCGCAATTGCTG CGACTCAACCAACCCCCGCCGGGGACACCTCTCTTGATCAATTATATCGG TCGTTTGCATCTTCACCGCTACATAAAACATCAAGCCCTCAATCCTCGTT CAACCAAGCACGGCAATTTATTCCCTCCCTAAAGATATGTTTTCCACTTA AAATACGGCAATATCATTATTCACATACCTGCAGATAATGTTCATGTGCA AAACGCACTTCACCAACGTGCCGAGTCAGACACGCGAGGGTTGGAAGCAG TATCGCGGCACGCGCACGTTCCCCGAAACCAAAATTGCCGTCGAGTGCCG ACCAGGGCCGAATCGCGGAAACGGAGTGACGCATTCGGAGGCAGACCCAG GGTACACGAATCCACCTGAAGATGACAAGATCAGGGGCACCACGAAGAAT TCAATGTGGCCCGGGAAGCTATACAACGTTCTCTATCAGGTATAGACAGT CAGTACATACGTTGCGAGCATGACGAACATGATTTGATTCTTTGAGGTGT ATTTTTATTTGATATATATATGACTTGTGTCCACCTATCTCCTCCTTGTG CTACATTATATTTCTGAGGGTGTTGATGCTTTTATGTAATGTTAGAGTGA AGGGGTGCAGGCGGAACATATGTATACATATTATGTCGTATGTACATACT TGGGATTCCACACGGTTTGACACATTCCATGTCGGCGAGATAGGGAACGC CGTGTCTTGTCGTGTCACAAGCTATGGCGGCGCATGGATGGCCGGCGTTG TGTGAGGTGATGCTTCATGTTAGACAAAGTACCTCAGCTTACTTCACTTG TTCTCCTGTTACCATAGCCGGTGGAGGCATCCGTGCACCGAGAATGCTTG TTCGTTCTTTCCCAAGGTCGCATAGCTCGAGACTGTATATAGTCTTCAGT GTCCAAGATGTTTGCTTGAATTGCCGGAGTCTAACTGGTTTAGCTCGTGA ACTCATACCGTACACCTGTTGGTAATACCGCGTTACAACATCTTCATCCG TCGCCCGGGTATTTTATTTTTATTTTTCACGTCGGTTTTATCGAAAAATT GCACTATATTTAGGATTTCTCAGTACCTGCGTGACGAAAGCCTGCAGCCC CTCTTGTCACTGAACAAGAAGCACCACCTTTCCATCTCTATTTCCCATAA CGTAAAACAAAACAAAGCAAGAAATACGCTGGAATTGTCAATCGTCTAAG GTTTCCCCCTTTCCCTGAAATGTTCCCTGTCGATAGATAACATGCATGTA CTAAAAGGTATGATGTACAAGACGTTGCTACTGGTAGAGGCACGACATTT GTAAGCCCTTCACATTCGTGTTGTAATCCTCGACCCATGCAAAAACACAG CTCGCTACGCTCACAGTAGACATTTGCGTACAAGGCCCGTCAAGACTGTT GAAAAAGCAACTCTTTGTCAAAAGTGTAACTCGAGTGCAGAATTGAATAT ATATTCCGAAATTGCAATGACACTGTGCTTAGCGTGTTTGATCCATCAAT ACGGACTAACTATCATTGTCTTGTTGCAGATTGCTAATGCCCCTCCCTCC CCCCCCCGTCGCCCAAGGTGTGGAATGCTCATGCGGAGAGGAGGAAAATG GAGACAGGAGACTCGCACTTTACCTCTATCGATCGAGCGGAGCTGGTGCC CGAGGCGGCAAGGGTGTTACGTGAGCAAGGTCACCCAGACATGGCGGTCA TTTTGGAGAACACCACGGAGGGTGCCCGCAAGGTGTGCATGATCTCCGCG CTTAGCTGTGCTGTGGAAGTGAGCGTGAGGTGTTGGGTAGATGATGGTGC AGGTGATAGGTAGTGCAAGGCTATCGTGCTGCGGAGAGAGCGCATGGTTT CGTGAGAAATATTCAATCTTGTTCTCTTTTTAGCCACACTTGACATTGGA AAGAGCGATTGGCCATCGGAAAATCGCTTGACAGAAAAAATGCTCCGTCA TCCCGAGGACGCGTGGTCAATGGTATAACAGTAAAAATATCAACCACGGC ATGCAAAATATGAGTACCCCCCTACCCCTTACTTTGTTGACTTTGTAAAG ATGTAATCCGGCAGTTTGAAGGTGCTGTGCATATCTGCTTTTACTTTTGC CTTTTGACTTGTTCTGTTTTGTATGGTACTATTCCCAACCGCATTCTCAT ATTGGAGACACCTTCCTCCTGACGAAGCTGTCCTTGGTGATTGGTGCGTG TGGTGATGTCACTGTGTTATAGTTGGGGGTAGAATTTTGCTCCTGCATGA AGTGCACTACTGTCCATCTCGTCACTTGTGCATTTTGTTGCCACCACGTG TCATGTAGTATGTAGATTTTTCATATGTCTCGACCATCTGATGCACATCT GATGCACACGTAATATCAGATCCGATTCAAGTAATAATAGAGCGGTAGCG GGAGCACAGTGTAAGTGAGAGGGGAGCAGGCACTTATTCGTATGTATCAT CCTTGCCAAGCGGACAACAGTATTCAACAATAGCGCCGGTCTGAACGCTA GCTAGTAACTTTACACTTGTGGATTTTGTTTGCTAACATGGAGTGAGACA CACGAACAGGTTTTGCTTTTTGCTCCCTTATAGTTCACTCTTGAGCTAGT CATGTATCGCACTTTGGATCTTCATATATTCCAACCTGTGCAATATCAGT TCGGAATAATAATGAACAACAAAGGACTGTTCGTTTCTATTTCTGTTTGT CAGTAGAATTAATTACTTGAGCCCCTTCCCCCCCGCTCGCGAACGCATAC GAATGGATACTTGAAACGGTTTATGTGAAAGTTCGACTCATATCCGTGTG AGTTTTAGCGTGTGCGGGCACATATAATTGAAGTGATCACCCCCTGCTTA TTCGTTTTAATAGTGTCCGTCGCAGCCGTAGATGGTTCAAGATACATACA ATAAACGTGCTCGTGCTCATCCTTGAGGCACACATTTTTTGTTTTCGTCT GAACCATTTCAAGTATTCGATATTCGTCCAGGGGGTGAATATTGAACATT TTTAAGCCAAGAAATTTGTGGAAAATTGGGGGTTAATGTTATAGTGCAGC ACTTGGTGTTGTCATTTTTTTCTTGTTTTTCAGCGCCGAAAAATGGATAA TATCTAGGCTAACTAATTCGCCATGCTTTGCTTGCAAAAGTGGACTTGGT CTGTCGGGGTATTTAGCACCTTGCAAGTTGGGGAGATAGGGGATTCTGTG ATGGGATGGGTCAACATGGGTACTAGTCTTACTTGAAATAACACGATAGT ATTAGGGCTTTTGACTGTCTTTGCGCTGTTAGTTCGTGTTTCCTCGGGGG GGTTGTGTTGTGGATGATTGCGCTTTGGAGCTTTCAACCTTTGACTGTTT GTTCGCAAGGTGGTGTCAAGCGGAGCAATCCGAACCCGTCGTTTAGTGTG GTGTGACATGCGTTTCTTTTCAATACCATCATCCATCATGGTCAATGTCG GCTGTTCTTTTTTAAAAAACTGGTTTGCCTGCCTTGTGGTATGACGTTTT GACTTTTTTCGTGTTTTCTTTCGATTTCGTCCTATATTTCTTTACTGTCT ACTTACCTGTCTACTTGTCTTCAGGTCATCCACAGCCGGGTGATCGCAAA GTACCTCAAGCACAGGTGCGTTTACGTGAGGCAACAAACTGGTCGAGTTA AGTGCTGAATAAGAACTACTGCCTGCTGTTCGATGCTTGTGGCCTCTACA GTAGAATGAAGATTGCCGACCATTCTGCCGTGTCTTCGCACGAAACTGTT TTGTCCATTTTTTTCATAATCTGTGGACAGCAGGACGTGTGCAGAGACTA TCAACGAATTTGCAAAGACAAGTTAATAAAGCCAGGTTCGAGACATTTAA CGAATGACGGACAATGTATATCTTTGCAGTTAGTTCATCGAATAACCCGC CAGCCCGAGACCCCCAAAACATGTTGCTCTCTAAACGGATAGCAGGACCT CAACCAAACCCAACAGCAAGTTAATATTATATTATCAATTTACGCAGCCT CTAACGCGACGGCACCATCCCTGCCAACCCCCACAAAACCCCGAAATACA CATGCACAAATGCGGGCCCTTCCTGGATGACCGACCCATAACGACAATAA CTACTAGGGAGAACTTCATCTTGAAACTTCGCAGCTCGCAACTCGATCCG CAAGAGATTGCTGACTGGGACGTGGCCCTCACTGCCGCTCAGCACCACGT GAACCTACAGCCCATTCGAGAAAGAGAAAGAGAGATGCACCCCACCACTT CCAACAGTAGCATCACTCATCCTCACGACGACGGAACTGGTATGGTGTCA GGGGTCGGCCCTGGGGGGTCCGGGACT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2285:10933..18409-

>mRNA_H-paniculata_contig2285.6101.1 ID=mRNA_H-paniculata_contig2285.6101.1|Name=mRNA_H-paniculata_contig2285.6101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig2285:10933..18409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCCCTCAACCAATTGGGAAGCCCGTTGCCTGGGGCGACCCATTA
TCACGACATCGACGATGTCGACGATGATATGAGTGACAGAATGTCGCGGA
ACTGCCCAAGGGTGCATCCTTGGTGTTCGGTGGAGGACTGCACGGAGCGC
CCTTTGAGACAGTTCATGGCATCCTCGAGCAAACAGATGATGGCCCTCAA
CCAATTGGGAAGCCCGTTGCCTGGGGCGACCCATTATCACGACATCGACG
ATGTCGACGATGATATGAGTGACAGAATGTCGCGGAACTGCCCAAGGGTG
CATCCTTGGTGTTCGGTGGAGGACTGCACGGAGCGCCCTTTGAGACAGTT
CATGGCATCCTCGAGCAAACAGATAATGTTCATGTGCAAAACGCACTTCA
CCAACGTGCCGAGTCAGACACGCGAGGGTTGGAAGCAGTATCGCGGCACG
CGCACGTTCCCCGAAACCAAAATTGCCGTCGAGTGCCGACCAGGGCCGAA
TCGCGGAAACGGAGTGACGCATTCGGAGGCAGACCCAGGGTACACGAATC
CACCTGAAGATGACAAGATCAGGGGCACCACGAAGAATTCAATGTGGCCC
GGGAAGCTATACAACGTTCTCTATCAGATAATGTTCATGTGCAAAACGCA
CTTCACCAACGTGCCGAGTCAGACACGCGAGGGTTGGAAGCAGTATCGCG
GCACGCGCACGTTCCCCGAAACCAAAATTGCCGTCGAGTGCCGACCAGGG
CCGAATCGCGGAAACGGAGTGACGCATTCGGAGGCAGACCCAGGGTACAC
GAATCCACCTGAAGATGACAAGATCAGGGGCACCACGAAGAATTCAATGT
GGCCCGGGAAGCTATACAACGTTCTCTATCAGGTGTGGAATGCTCATGCG
GAGAGGAGGAAAATGGAGACAGGAGACTCGCACTTTACCTCTATCGATCG
AGCGGAGCTGGTGCCCGAGGCGGCAAGGGTGTTACGTGAGCAAGGTCACC
CAGACATGGCGGTCATTTTGGAGAACACCACGGAGGGTGCCCGCAAGGTG
TGGAATGCTCATGCGGAGAGGAGGAAAATGGAGACAGGAGACTCGCACTT
TACCTCTATCGATCGAGCGGAGCTGGTGCCCGAGGCGGCAAGGGTGTTAC
GTGAGCAAGGTCACCCAGACATGGCGGTCATTTTGGAGAACACCACGGAG
GGTGCCCGCAAGGTCATCCACAGCCGGGTGATCGCAAAGTACCTCAAGCA
CAGGTCATCCACAGCCGGGTGATCGCAAAGTACCTCAAGCACAGGGAGAA
CTTCATCTTGAAACTTCGCAGCTCGCAACTCGATCCGCAAGAGATTGCTG
ACTGGGACGTGGCCCTCACTGCCGCTCAGCACCACGTGAACCTACAGCCC
ATTCGAGAAAGAGAAAGAGAGATGCACCCCACCACTTCCAACAGTAGCAT
CACTCATCCTCACGACGACGGAACTGGTATGGTGTCAGGGGTCGGCCCTG
GGGGGTCCGGGACTGGAGAACTTCATCTTGAAACTTCGCAGCTCGCAACT
CGATCCGCAAGAGATTGCTGACTGGGACGTGGCCCTCACTGCCGCTCAGC
ACCACGTGAACCTACAGCCCATTCGAGAAAGAGAAAGAGAGATGCACCCC
ACCACTTCCAACAGTAGCATCACTCATCCTCACGACGACGGAACTGGTAT
GGTGTCAGGGGTCGGCCCTGGGGGGTCCGGGACT
back to top