mRNA_H-paniculata_contig22815.6090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22815.6090.1
Unique NamemRNA_H-paniculata_contig22815.6090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22815.6090.1 vs. uniprot
Match: D8LMY9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY9_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.410e-57
Identity = 86/122 (70.49%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 KAIAKNPTVQNANATMSPGMDVSLFDCFSDPTGCLVTYFCGCVVSGFNAARVDDRECVPCDIFSNDYQTRQAMRAKYDMGFAPAPDFFSMFCCRFCFIMQTAKEIALKRGDEPVYFGEVSMN 366
            +AIAKN  V  ANA MSPGM+ SLFDCFSDP GC+++  CGC V+GF AARVDDREC  CD FSN YQ RQ++RAKYDMGFAP PDF S++ C  CFIMQ AKE+AL++GDEPVYFGEV MN
Sbjct:   12 EAIAKNANVVRANAAMSPGMETSLFDCFSDPVGCIMSCCCGCFVAGFTAARVDDRECNLCDAFSNSYQVRQSLRAKYDMGFAPLPDFVSLYFCGCCFIMQNAKEVALQKGDEPVYFGEVGMN 133
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BLAST of mRNA_H-paniculata_contig22815.6090.1 vs. uniprot
Match: A0A6U1MVS5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MVS5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.840e-26
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   34 ANATMSPGMDVSLFDCFSDPTGCLVTYFCGCVVSGFNAARVDDRECVPCD-IFSNDYQTRQAMRAKYDMGFAPAPDFFSMFCCRFCFIMQTAKEIALKRGDEPVYFGEVSMNVMG 375
            A   ++PG +  LF C +DP GC+++  CG +V+ F  A V++REC PCD +  + + TRQ +R KY +G+    DF + + C  C + Q A+E+A K+G EPV+FG V  N+ G
Sbjct:    9 AGGFLTPGFNEPLFGCMNDPMGCVLSCCCGGIVNAFTQAEVEERECTPCDCLMGSAWFTRQTIRTKYSLGYNEIMDFVAAYFCGCCVVNQMAREVAKKKGKEPVWFGSVKTNLFG 123
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BLAST of mRNA_H-paniculata_contig22815.6090.1 vs. uniprot
Match: A0A6H5L3Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.860e-25
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 KAIAKNPTVQNANATMSPGMDVSLFDCFSDPTGCLVTYFCGCVVSGFNAARVDDRECVPCDIFSNDYQTR 210
            +AI+KN  V  ANA MSPGM+ SLFDCFSDP GC+++  CGC+V+GF AARVDDREC  CD FSN YQ R
Sbjct:   12 EAISKNANVVRANAAMSPGMETSLFDCFSDPVGCIMSCCCGCIVAGFTAARVDDRECNLCDAFSNSYQAR 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22815.6090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMY9_ECTSI1.410e-5770.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6U1MVS5_9STRA7.840e-2640.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5L3Y3_9PHAE2.860e-2567.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22815contigH-paniculata_contig22815:240..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.5
Seed ortholog evalue6e-07
Seed eggNOG ortholog72019.SARC_09039T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PLAC8 family
EggNOG OGs2E0DQ@1,2S6TH@2759,3ABUN@33154
Ec32 ortholog descriptionUncharacterised protein family Cys-rich
Ec32 orthologEc-02_004180.1
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size624
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22815.6090.1prot_H-paniculata_contig22815.6090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22815 285..623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.9672415-UTR-H-paniculata_contig22815:239..2841622929635.9672415-UTR-H-paniculata_contig22815:239..284Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22815 240..284 +
1691480945.5832305-UTR-H-paniculata_contig22815:239..2841691480945.5832305-UTR-H-paniculata_contig22815:239..284Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22815 240..284 +
1622929635.9974725-UTR-H-paniculata_contig22815:623..8631622929635.9974725-UTR-H-paniculata_contig22815:623..863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22815 624..863 +
1691480945.6098938-UTR-H-paniculata_contig22815:623..8631691480945.6098938-UTR-H-paniculata_contig22815:623..863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22815 624..863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.979445-CDS-H-paniculata_contig22815:284..6231622929635.979445-CDS-H-paniculata_contig22815:284..623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22815 285..623 +
1691480945.6018035-CDS-H-paniculata_contig22815:284..6231691480945.6018035-CDS-H-paniculata_contig22815:284..623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22815 285..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22815.6090.1

>prot_H-paniculata_contig22815.6090.1 ID=prot_H-paniculata_contig22815.6090.1|Name=mRNA_H-paniculata_contig22815.6090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MSPGMDVSLFDCFSDPTGCLVTYFCGCVVSGFNAARVDDRECVPCDIFSN
DYQTRQAMRAKYDMGFAPAPDFFSMFCCRFCFIMQTAKEIALKRGDEPVY
FGEVSMNVMGDR*
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mRNA from alignment at H-paniculata_contig22815:240..863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22815.6090.1 ID=mRNA_H-paniculata_contig22815.6090.1|Name=mRNA_H-paniculata_contig22815.6090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig22815:240..863+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCCATCGCCAAAAACCCCACCGTCCAAAATGCCAACGCGACCATGTC
GCCCGGCATGGATGTGAGCCTGTTCGACTGCTTCTCCGACCCTACAGGCT
GCCTGGTGACATACTTCTGCGGATGCGTGGTGTCGGGCTTCAACGCGGCT
CGCGTAGACGACCGCGAGTGCGTACCATGCGACATCTTTTCGAATGACTA
CCAGACGCGCCAGGCGATGCGCGCGAAATATGACATGGGCTTCGCGCCGG
CCCCTGACTTCTTTTCAATGTTCTGCTGCAGATTCTGCTTCATTATGCAG
ACGGCAAAGGAAATCGCGCTCAAGAGGGGAGATGAGCCGGTGTACTTTGG
GGAGGTCAGCATGAACGTCATGGGCGACCGCTAAAGGGAATTTGTCTATT
GGCATATGTATTATTTTTTAGTTGGGTTGAGGTTCTGCATGTTTGGTGCT
CGTAGGCGGAGTCTTCTAGTTTTGAGTTTTTGTTTTTGGGATAATCCTAT
CAGTCTGATGATTCTTTGGTGGTCGGTTTGAAGCAGACTTGTCTCGACCT
TACTTGTGAGTTGTGTTGGTGTGTCTTGACCAACCCACTTGGGAGCAATT
CATATCTCATGGGCGGATACTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22815:240..863+

>mRNA_H-paniculata_contig22815.6090.1 ID=mRNA_H-paniculata_contig22815.6090.1|Name=mRNA_H-paniculata_contig22815.6090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig22815:240..863+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCCCGGCATGGATGTGAGCCTGTTCGACTGCTTCTCCGACCCTAC
AGGCTGCCTGGTGACATACTTCTGCGGATGCGTGGTGTCGGGCTTCAACG
CGGCTCGCGTAGACGACCGCGAGTGCGTACCATGCGACATCTTTTCGAAT
GACTACCAGACGCGCCAGGCGATGCGCGCGAAATATGACATGGGCTTCGC
GCCGGCCCCTGACTTCTTTTCAATGTTCTGCTGCAGATTCTGCTTCATTA
TGCAGACGGCAAAGGAAATCGCGCTCAAGAGGGGAGATGAGCCGGTGTAC
TTTGGGGAGGTCAGCATGAACGTCATGGGCGACCGCTAAATGTCGCCCGG
CATGGATGTGAGCCTGTTCGACTGCTTCTCCGACCCTACAGGCTGCCTGG
TGACATACTTCTGCGGATGCGTGGTGTCGGGCTTCAACGCGGCTCGCGTA
GACGACCGCGAGTGCGTACCATGCGACATCTTTTCGAATGACTACCAGAC
GCGCCAGGCGATGCGCGCGAAATATGACATGGGCTTCGCGCCGGCCCCTG
ACTTCTTTTCAATGTTCTGCTGCAGATTCTGCTTCATTATGCAGACGGCA
AAGGAAATCGCGCTCAAGAGGGGAGATGAGCCGGTGTACTTTGGGGAGGT
CAGCATGAACGTCATGGGCGACCGCTAA
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