mRNA_H-paniculata_contig228.6083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig228.6083.1
Unique NamemRNA_H-paniculata_contig228.6083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig228.6083.1 vs. uniprot
Match: D7FPX6_ECTSI (Protein-serine/threonine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.380e-22
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  289 SNMSSANWVRHQSSS--GSVDYSTLMAGPGTPLHNDIMLSASRNQTGVSLQTLIDTGRGDLLSPEMGLAGQTSLSVKQKMLIQV 534
            SN+++ N  R Q SS  G VDYS+LMAGPGT LH+DIM SA+R QTGVSL+TLIDTGRGDLLS EMGL GQ SLS KQKMLIQV
Sbjct:   65 SNVATCNVSRRQLSSRGGDVDYSSLMAGPGTALHDDIMESAARKQTGVSLKTLIDTGRGDLLSGEMGLTGQDSLSTKQKMLIQV 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig228.6083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPX6_ECTSI8.380e-2273.81Protein-serine/threonine kinase n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig228contigH-paniculata_contig228:35242..37916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionpyruvate dehydrogenase kinase
Ec32 orthologEc-01_008280.1
Exons2
Model size2305
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig228.6083.1prot_H-paniculata_contig228.6083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig228 35260..36232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.1589077-UTR-H-paniculata_contig228:35241..352591622929635.1589077-UTR-H-paniculata_contig228:35241..35259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 35242..35259 +
1691480945.2007756-UTR-H-paniculata_contig228:35241..352591691480945.2007756-UTR-H-paniculata_contig228:35241..35259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 35242..35259 +
1622929635.202093-UTR-H-paniculata_contig228:36232..379161622929635.202093-UTR-H-paniculata_contig228:36232..37916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 36233..37916 +
1691480945.2372785-UTR-H-paniculata_contig228:36232..379161691480945.2372785-UTR-H-paniculata_contig228:36232..37916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig228 36233..37916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.1742587-CDS-H-paniculata_contig228:35259..356631622929635.1742587-CDS-H-paniculata_contig228:35259..35663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 35260..35663 +
1691480945.2125063-CDS-H-paniculata_contig228:35259..356631691480945.2125063-CDS-H-paniculata_contig228:35259..35663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 35260..35663 +
1622929635.1909244-CDS-H-paniculata_contig228:36033..362321622929635.1909244-CDS-H-paniculata_contig228:36033..36232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 36034..36232 +
1691480945.2257771-CDS-H-paniculata_contig228:36033..362321691480945.2257771-CDS-H-paniculata_contig228:36033..36232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig228 36034..36232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig228.6083.1

>prot_H-paniculata_contig228.6083.1 ID=prot_H-paniculata_contig228.6083.1|Name=mRNA_H-paniculata_contig228.6083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MARRVILTHAAEAAAARTTAGYGSSIQAPALVRRHGPRQRFGGATRTRGI
LSSSTSSAVSRAKVFLPQNVRCLWVPSTSTVDWGGGDVTTSNMSSANWVR
HQSSSGSVDYSTLMAGPGTPLHNDIMLSASRNQTGVSLQTLIDTGRGDLL
SPEMGLAGQTSLSVKQKMLIQVRNGHEFWIYWYVYSSTATCCIGLKGGKI
*
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mRNA from alignment at H-paniculata_contig228:35242..37916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig228.6083.1 ID=mRNA_H-paniculata_contig228.6083.1|Name=mRNA_H-paniculata_contig228.6083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2675bp|location=Sequence derived from alignment at H-paniculata_contig228:35242..37916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCTTCTGGTACATAGATGGCTCGGCGAGTGATCCTGACACATGCTGC
AGAAGCGGCTGCAGCAAGAACCACAGCAGGATACGGGTCTAGCATTCAGG
CGCCTGCTTTGGTGAGACGGCATGGACCCCGCCAACGCTTCGGTGGTGCT
ACCAGAACGCGAGGAATTTTGAGCTCTTCCACTAGCTCGGCTGTTTCACG
AGCAAAGGTCTTTTTGCCGCAAAATGTACGATGCTTGTGGGTACCGTCAA
CAAGCACAGTTGACTGGGGAGGAGGGGATGTCACAACAAGCAACATGAGT
AGTGCCAACTGGGTTCGGCATCAGTCTTCTTCGGGATCTGTAGACTACAG
CACGCTGATGGCCGGACCGGGGACGCCATTGCACAATGATATCATGCTGA
GCGCGTCTCGCAACCAAACCGGGTATGTACATGCCGCTGCAGTACATACC
GTGACAAATTATTGGGCAGTTTACTGTCCGTCTCAGGGCTGGGGATACAT
ACAGTCATACAGTACACTACATCTTAGAGCACTTGCGTATGCATTAATAT
AGCACGGCATAACTGTCAATATATACCATGTCCATTAGTTGTCCTTGATC
GATACACACGGCTCGCTGCGCTGTAAAAAATGTATGCACGAGGTCGATAA
AGATTCGTTTTCAAATTTCACTCGATTCCAGATTTGGAAAACTATTCCGA
GACGAAAGCGACGATGACCTTAGCGTAGACATGGGATCTTATACCTAGTT
TCAACTCAGCCGCTGCTGAACGTGTCCGTACTTGTTTACCAGCGTCAGTC
TGCAAACATTAATCGATACCGGCCGAGGAGACCTGCTCTCGCCGGAGATG
GGGCTCGCAGGGCAGACTAGTCTCTCCGTCAAGCAGAAAATGCTGATTCA
GGTAAGAAATGGCCACGAATTTTGGATATACTGGTATGTATACTCCAGTA
CCGCAACCTGCTGCATTGGTTTGAAAGGGGGGAAAATCTAACCTCAGGGT
GACGGACGCAATGGCGCTCCACGCCATATCGCTTGTTTGATTTTGTTTTC
TGTTATTCTACTTGACCCGTATCAGCACAGTGCTTACTCCGTGCCTATAT
TTAGGTTTCACAAGCTGCCTGTTCGAACGTGGTTCGTCAAGTTTGCTGAT
GGAGGTGGGGTGAAGCAAGATAAAAATAGAGGATGTAAAAAACGCACAGT
CGAGGTCCCACGTTGGGGCATGTATGTGTCAACCGATCCAATCGACCTTA
ACATGACCCTAATAGGGACACGATGCATAAAGAGCACCACTCACGGTACG
TGACGCCTTATTTACCCATTTTTATGGCCAGTGATGGCACGTACCGCGTT
ATTTATCACTGCCTGAGCGTCATTCATCAGGGAGAAGAGGAGGCTTTTTG
TGCCCATGTTGTTGTGTCGTTGATAAGACATTGTGCTGTATGTTCTGTTC
TGCTTCATCGTAGGTACTTGCAGTCGGCAAAGCCTGACTGTAGTGGACTG
ATCAAATAACCTCTATACCAAAAGGGACAAACACGCTTACGAAGATACAG
CTTTGTGTACGTTCACTTGCTAGCTTCTTTCACGAGTCACGCATATCTCT
GAACGAGCCAAGGTTTCTCTCGCGCTGTAAGGTATTATTATAGGGATGCA
AATGCACTAGTTTTACATCACTTGTACCGCCTGCTGGATAGATTTTAGCT
CGCATCAAGCTACTCTCGCGTTTTAAGGTCATATTATAGGTGTGCAAATG
CACGAGTTTTATGCCATTTGTACCGCCTTTCGGCTAGATTATAGCTGGGA
TTAAGCTTCTCTCGCGGTGTTCAGATCGTTGTTGACACAGTGCAAAGGTC
CTCACAGTACGGTACTAGTATACTGCCCATTTACTGAACTCGATTCCGGA
AAATGGACTTGATGAAAGATGGGCCCAAATATACTGGAAATTATCTCGCT
GTATGTACCCCCTTCTTTCACAATTTTATAGCAAGTCGAATATGCTGAAT
TAAGACCACTATCCTTGGTATTTACCGATGGTACAGAATTGCGACGATAT
TTGAAACAATGATGCAATGAGGCAAATGTACTGAAGCTGCAGGGGGTATG
TTTACTGAGCCCCCTGCGGTCTGATTAGACATGTCGATATGCCCGCTATC
GCTGGAGTACCTTCGTTGTGGGTAAATTACCTCCATTGTAATGCGTTTTG
GTGCGGCTTGTTTTGCTCACGACCTTTTTGTATCGAGGGTAAATACCTTA
CAGTGGCATGGTTTCGAACAAGCAGGATCACTCATACCATGTCGATGGCA
TCAAATCCTGTCCGCTCTGTGAAGTCGAATGGCGCCGGACCAGGCTCGTA
TCACGACGTGAGACCGCGCGGGAAGCTCCAGTGCTGTTTTATGTTTTTTT
GCTCTTATTTTGACCCTTTCGCCGATCCTTGATTTAGAGTACAGCACAGT
TTTGTGTACGTTTAATTGCTAGCTTCTTCCGTGTGTCCCATATCACACAT
CACCCTACATTGCTATGGACTAAGGGCTTGTTACCCTCCGCTCCATCGCA
ATATAGCATTTTTATAAACCACGTACGGTACAATCATGGTAGTTTCAGGC
CATATACATAGCCTTCACTTGCATAAGCCCTTCCCATAGATAATGGGGCC
ACCTGCTCGTAAGTGCACCTGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig228:35242..37916+

>mRNA_H-paniculata_contig228.6083.1 ID=mRNA_H-paniculata_contig228.6083.1|Name=mRNA_H-paniculata_contig228.6083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig228:35242..37916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGGCGAGTGATCCTGACACATGCTGCAGAAGCGGCTGCAGCAAG
AACCACAGCAGGATACGGGTCTAGCATTCAGGCGCCTGCTTTGGTGAGAC
GGCATGGACCCCGCCAACGCTTCGGTGGTGCTACCAGAACGCGAGGAATT
TTGAGCTCTTCCACTAGCTCGGCTGTTTCACGAGCAAAGGTCTTTTTGCC
GCAAAATGTACGATGCTTGTGGGTACCGTCAACAAGCACAGTTGACTGGG
GAGGAGGGGATGTCACAACAAGCAACATGAGTAGTGCCAACTGGGTTCGG
CATCAGTCTTCTTCGGGATCTGTAGACTACAGCACGCTGATGGCCGGACC
GGGGACGCCATTGCACAATGATATCATGCTGAGCGCGTCTCGCAACCAAA
CCGGATGGCTCGGCGAGTGATCCTGACACATGCTGCAGAAGCGGCTGCAG
CAAGAACCACAGCAGGATACGGGTCTAGCATTCAGGCGCCTGCTTTGGTG
AGACGGCATGGACCCCGCCAACGCTTCGGTGGTGCTACCAGAACGCGAGG
AATTTTGAGCTCTTCCACTAGCTCGGCTGTTTCACGAGCAAAGGTCTTTT
TGCCGCAAAATGTACGATGCTTGTGGGTACCGTCAACAAGCACAGTTGAC
TGGGGAGGAGGGGATGTCACAACAAGCAACATGAGTAGTGCCAACTGGGT
TCGGCATCAGTCTTCTTCGGGATCTGTAGACTACAGCACGCTGATGGCCG
GACCGGGGACGCCATTGCACAATGATATCATGCTGAGCGCGTCTCGCAAC
CAAACCGGCGTCAGTCTGCAAACATTAATCGATACCGGCCGAGGAGACCT
GCTCTCGCCGGAGATGGGGCTCGCAGGGCAGACTAGTCTCTCCGTCAAGC
AGAAAATGCTGATTCAGGTAAGAAATGGCCACGAATTTTGGATATACTGG
TATGTATACTCCAGTACCGCAACCTGCTGCATTGGTTTGAAAGGGGGGAA
AATCTAACGTCAGTCTGCAAACATTAATCGATACCGGCCGAGGAGACCTG
CTCTCGCCGGAGATGGGGCTCGCAGGGCAGACTAGTCTCTCCGTCAAGCA
GAAAATGCTGATTCAGGTAAGAAATGGCCACGAATTTTGGATATACTGGT
ATGTATACTCCAGTACCGCAACCTGCTGCATTGGTTTGAAAGGGGGGAAA
ATCTAA
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