mRNA_H-paniculata_contig2278.6070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2278.6070.1
Unique NamemRNA_H-paniculata_contig2278.6070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2278.6070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2278contigH-paniculata_contig2278:17824..19126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.0590684-CDS-H-paniculata_contig2278:17823..179941622929634.0590684-CDS-H-paniculata_contig2278:17823..17994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 17824..17994 +
1691480944.6350844-CDS-H-paniculata_contig2278:17823..179941691480944.6350844-CDS-H-paniculata_contig2278:17823..17994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 17824..17994 +
1622929634.0802627-CDS-H-paniculata_contig2278:19097..191241622929634.0802627-CDS-H-paniculata_contig2278:19097..19124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 19098..19124 +
1691480944.6466165-CDS-H-paniculata_contig2278:19097..191241691480944.6466165-CDS-H-paniculata_contig2278:19097..19124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 19098..19124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2278.6070.1prot_H-paniculata_contig2278.6070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2278 17824..19124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2278.6070.1

>prot_H-paniculata_contig2278.6070.1 ID=prot_H-paniculata_contig2278.6070.1|Name=mRNA_H-paniculata_contig2278.6070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
TRAAPSASTTAGAMSRKRTQRTEEAEPQRKRHRAGGEGEAEASRTVPDRG
KATGRRTAVAVATEND
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mRNA from alignment at H-paniculata_contig2278:17824..19126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2278.6070.1 ID=mRNA_H-paniculata_contig2278.6070.1|Name=mRNA_H-paniculata_contig2278.6070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1303bp|location=Sequence derived from alignment at H-paniculata_contig2278:17824..19126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGCGCAGCACCATCAGCATCGACGACCGCGGGAGCGATGTCGAGGAA
GCGGACTCAGCGAACTGAGGAAGCGGAACCGCAGCGCAAGCGTCACCGGG
CCGGAGGCGAGGGAGAAGCCGAGGCATCTCGCACCGTGCCGGACAGGGGG
AAAGCTACCGGACGGCGTACGGTAAATGCAGATACCATGTATTGCGCGTG
TTGCATTCTTCTACAATGTACTATTGGCGTCGGAGGGTGCTTGTTATACG
CGTGCGTCGCTGTTGGCTTTGTGTGGAAGTCGTTGTTCCTAAGGTCGGCT
GGGTGGCTTGTCATATGCGTGCGCGTGCATACACGTATGTGCAACTTGTT
GTGTAGAGAGTGCTGGCTACCTGCAGCACGGTTCCACATGCGTTATTTTT
TTCGCTCGGTTTGTGTTGTGTGTTGTGCACATGTTGACAAGGGTTTCCTC
GTCAAATGATGGTTGCTCGTGTCACGACCCACCGTAGAGCGTGCTCCTAC
CAATGATCAATTTTTTGTGTACCACTCTGGTTCGTGAGACAAGCTATTTT
TGACATTTTGTGGCATGTATTTTCTGATTCATAACCGTTTTTGAAATGAA
ACATTTGTTTTCATGGAAGCACTTGGAATACGACGATTGTACCCCAACAT
CGAGGGTCACGAAATTTCGAAGTGTTGGTGTTTTTACCTGACGGAATCCG
CGTTACCCCCTGCCCCAACCGTATGTGCAGTTTGGTGGTTGTGTGATATC
CACAGCTATGTGTGTACCATACTGGTGCGACGGGAACCATGAAGTTATTC
GTGTACAATATCTCCTTGCCGTGGATACCCGGGGATGATACATTGTTTTC
CGGGCATCATCCCGCCCGCCACCCCCCGGGATTGTTCTTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTGTTGGGAAGATAAAGGCGCTGTGTGATTGCAGT
GTGGTGCTTGTAAAGCAGCCACAGCTCCTCCTAGAGCTTTACGTGGTAGT
GTATGTTGCTCATGTTGGAGACGTTGTCGAGTGTAGGTTGTACCATGGAA
CAGGGTGAGGCTTGTTGTTTCATATATATATTTTCTATATCGTACTTGCT
GTCAGACTCTATTTCAGACGAGGGAAACACGTGCCACGAATGCAGGTGTG
GTTTGCTCCTGCAAAAAAGATTCCTTGCGGATTTTGGCCAAGTTTACTAA
TCTGCTGTTGAGGTGTTTTTATGTCTTGATCGCCCATTCCCCTATCCTGC
CCGGCCTCGGTGGTTGTTTTCCAGGCGGTAGCGGTGGCGACGGAGAACGA
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2278:17824..19126+

>mRNA_H-paniculata_contig2278.6070.1 ID=mRNA_H-paniculata_contig2278.6070.1|Name=mRNA_H-paniculata_contig2278.6070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig2278:17824..19126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGCGCAGCACCATCAGCATCGACGACCGCGGGAGCGATGTCGAGGAA
GCGGACTCAGCGAACTGAGGAAGCGGAACCGCAGCGCAAGCGTCACCGGG
CCGGAGGCGAGGGAGAAGCCGAGGCATCTCGCACCGTGCCGGACAGGGGG
AAAGCTACCGGACGGCGTACGACCCGCGCAGCACCATCAGCATCGACGAC
CGCGGGAGCGATGTCGAGGAAGCGGACTCAGCGAACTGAGGAAGCGGAAC
CGCAGCGCAAGCGTCACCGGGCCGGAGGCGAGGGAGAAGCCGAGGCATCT
CGCACCGTGCCGGACAGGGGGAAAGCTACCGGACGGCGTACGGCGGTAGC
GGTGGCGACGGAGAACGATGCGGTAGCGGTGGCGACGGAGAACGAT
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