mRNA_H-paniculata_contig2273.6055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 123 bits (309), Expect = 4.440e-31 Identity = 66/178 (37.08%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
+Q I SL+ L Q R D+++ V Q R NP +HM + K +LRYL+G P+L I Y + F L+ F D+S+G + RST+G ++FL G ++ + + Q + AQ+T EAEL +S A++ +Y+S + E+G++ F V I + GAL +A + R+KH +RF LR+
Sbjct: 79 FQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGANP-DNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 254
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: Q9SHR5_ARATH (F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SHR5_ARATH) HSP 1 Score: 126 bits (317), Expect = 2.460e-30 Identity = 62/180 (34.44%), Postives = 115/180 (63.89%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRDWI 546
Y + V S++ R D+A+ + +R++ P S+H E+VK ++RYLKGA +L + ++++ +F +T +CD++Y D ++ RS SG ++ + G V + +SLQ ++A STTEAE I ++ AK+ M++ G+L+++G + V+I+C ++ A+ L+ Y R+KH +RF +RD +
Sbjct: 1137 YSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAA-DLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDK-VKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVV 1314
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 125 bits (313), Expect = 7.410e-30 Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
+QAI SL+ L Q R D+++ V Q R NP +HM + K +LRYL+G P+L I Y + F L+ F D+S+G + RST+G ++FL G ++ + + Q + AQ+T EAEL +S A++ +Y+S + E+G++ F V I + GAL +A + R+KH +RF LR+
Sbjct: 516 FQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGANP-DNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 691
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: UPI001AD9288A (secreted RxLR effector protein 161-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD9288A) HSP 1 Score: 119 bits (297), Expect = 9.990e-30 Identity = 69/179 (38.55%), Postives = 108/179 (60.34%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNF-ELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
Y+ ++ SL+ LT + R D+ FVV +R+++ PT +HM++VKRILRYL+G +L + Y + EL F D Y GD++ +STSG ++ LS + +SS Q +++ STTEAE I ++CA Q +++ +L+ LGW I+C N A+ L+ RSKH +RF LR+
Sbjct: 31 YKQVIGSLMYLTVT-RPDLMFVVSLVSRYMEKPTELHMQAVKRILRYLRGTTDLGVCYKKGGKAGELVAFSDNDYA-GDTDDRKSTSGYVFLLSSGAMAWSSKKQPVVSLSTTEAEFISAASCACQAVWMQRVLKSLGWIQSKSTVIYCDNCSAIKLSKNPVMHGRSKHIDVRFHFLRE 207
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.090e-29 Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
+QAI SL+ L Q R D+++ V Q R NP +HM + K +LRYL+G P+L I Y + F L+ F D+S+G + RST+G ++FL G ++ + + Q + AQ+T EAEL +S A++ +Y+S + E+G++ F V I + GAL +A + R+KH +RF LR+
Sbjct: 675 FQAITGSLLYLAQCTRYDMSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGANP-DNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRE 850
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.160e-29 Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
+QAI SL+ L Q R D+++ V Q R NP +HM + K +LRYL+G P+L I Y + F L+ F D+S+G + RST+G ++FL G ++ + + Q + AQ+T EAEL +S A++ +Y+S + E+G++ F V I + GAL +A + R+KH +RF LR+
Sbjct: 1295 FQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGANP-DNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: UPI00201B2CFE (secreted RxLR effector protein 161-like n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201B2CFE) HSP 1 Score: 117 bits (293), Expect = 1.730e-29 Identity = 72/179 (40.22%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 19 VRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRDWINQE 555
V SL+ LT + R D+ +VV ARF++ PT +H ++VKR+LRYLKG L I Y R L + D+ Y GD + +STSG ++ LS VV +SS Q +++ STTEAE I + CA Q +++ +L +LG++ IFC N + L+ RSKH +RF LR+ +N E
Sbjct: 2 VGSLMYLT-ATRPDLMYVVSLIARFMEAPTVLHQQAVKRVLRYLKGTAKLGILYKRGDEESLLAYSDSDYA-GDLDGRKSTSGYVFKLSSGVVAWSSKKQPVVSLSTTEAEYITAAACAGQCIWMQRVLEKLGFKQCKCT-IFCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRELVNNE 177
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 123 bits (308), Expect = 3.750e-29 Identity = 59/155 (38.06%), Postives = 97/155 (62.58%), Query Frame = 1
Query: 85 ARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRDWIN 549
AR + +P H+ ++K I RYL+ PNL + Y +DS FEL + DASY + ++ +S +GSM FL+G++++FSS +Q I+AQS++E E +++ AK G+Y S ++ ELGW ++ + AL L T+ RS+H +R+ LR W++
Sbjct: 690 ARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFELPCYSDASYAS--TKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVS 842
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A822XKI1_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XKI1_NELNU) HSP 1 Score: 122 bits (307), Expect = 5.350e-29 Identity = 71/178 (39.89%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASYGTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRD 540
Y+ +V S + +T + R D+A+VV +RF++ PT +H ++VKR+LRYLKG L I Y R +L + D+ Y GD E +STSG ++ LS V +SS Q ++ STT+AE I +++CA Q +++ IL +LG + +FC N A+ L+ RSKH IRF LRD
Sbjct: 1018 YKQMVGSFMYMT-ATRPDLAYVVSLISRFMERPTELHQQAVKRVLRYLKGTTELGIFYKRGGEEKLVAYSDSDYA-GDVEDRKSTSGYVFLLSSGAVAWSSKKQPVVTLSTTKAEFIAVASCACQSVWMRRILEKLGHKQSKCTDVFCDNSSAIKLSKNPVMHGRSKHIDIRFHFLRD 1193
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.180e-28 Identity = 71/183 (38.80%), Postives = 115/183 (62.84%), Query Frame = 1
Query: 7 YQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLKGAPNLKITYSRDSNFELTDFCDASY-GTGDSEKARSTSGSMYFLSGEVVHFSSSLQNIMAQSTTEAELIVMSTCAKQGMYLSGILRELGWRNFHIVRIFCGNKGALLLAGQDTYRIRSKHTPIRFAGLRDWINQ 552
YQ IV SL+ LT + R +I + V+ R ++ PT+ HM KR+LRYL+G P++ + + R ++L +CDAS+ G+ + + RS++G ++ L+G VV +S+LQ + AQS+ AE+I M+T A++ +YL G+L ELG+ +I I + GA+ AG +R RSK R+ LR +N+
Sbjct: 485 YQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRR-GQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIP-IHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNK 665 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2273.6055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2273.6055.1 >prot_H-paniculata_contig2273.6055.1 ID=prot_H-paniculata_contig2273.6055.1|Name=mRNA_H-paniculata_contig2273.6055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp RDYQAIVRSLILLTQSARMDIAFVVLQTARFVDNPTSIHMESVKRILRYLback to top mRNA from alignment at H-paniculata_contig2273:12755..13312+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2273.6055.1 ID=mRNA_H-paniculata_contig2273.6055.1|Name=mRNA_H-paniculata_contig2273.6055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at H-paniculata_contig2273:12755..13312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2273:12755..13312+ >mRNA_H-paniculata_contig2273.6055.1 ID=mRNA_H-paniculata_contig2273.6055.1|Name=mRNA_H-paniculata_contig2273.6055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig2273:12755..13312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |