mRNA_H-paniculata_contig22670.6033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22670.6033.1
Unique NamemRNA_H-paniculata_contig22670.6033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A7S3MDI2_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDI2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.540e-22
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKK 177
            DTLWLMGM DEF +ARDWV   L+F+ A +VSVFETTIRELGGLL+AYDLS D +FL+K
Sbjct:   81 DTLWLMGMKDEFKEARDWVAHSLTFDKAGSVSVFETTIRELGGLLAAYDLSKDKIFLQK 139
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.710e-20
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKV 180
            DTLWLMGM +EF  ARDWV+D+L+F HA+ VSVFETTIRELGGLLSAYDLS D++F  K 
Sbjct:  486 DTLWLMGMKEEFYRARDWVKDKLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTKA 545
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A6U4HU98_9STRA (alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HU98_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.340e-20
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKV 180
            DTLWLM M DEF +ARDWV++ LSF+ A TVSVFETTIRELGGLLSAYDLS D VFL K 
Sbjct:  651 DTLWLMDMKDEFYEARDWVKNSLSFDRAGTVSVFETTIRELGGLLSAYDLSGDAVFLDKA 710
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A7R9VYD3_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYD3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.500e-20
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLMGM DEF + RDWVRD L  +    VSVFET IR LGGLLSAYDLS D  FL K  D
Sbjct:    7 DTLWLMGMRDEFYEGRDWVRDRLDHDKVGKVSVFETAIRSLGGLLSAYDLSGDSAFLLKADD 68
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A7S2UB93_9STRA (alpha-1,2-Mannosidase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB93_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.050e-19
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLMG+ +EF + RDWVRD L  +H N+VSVFETTIR LGGLLSAYD S D VFL+K  D
Sbjct:  296 DTLWLMGLKEEFWEGRDWVRDHLEHDHVNSVSVFETTIRSLGGLLSAYDWSGDKVFLEKAQD 357
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A7S2EYT1_TRICV (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYT1_TRICV)

HSP 1 Score: 89.4 bits (220), Expect = 3.810e-19
Identity = 44/62 (70.97%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLMGM DEF +ARDWVRD L   H   VSVFETTIR LGGLLSAYD S D  FL+K  D
Sbjct:  330 DTLWLMGMKDEFYEARDWVRDHLDHTHVGGVSVFETTIRSLGGLLSAYDWSGDSAFLEKADD 391
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A6H5L0M9_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.210e-19
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTDDRQDYLP 207
            DTLWLMG+T+EF + RDWVRD L+F     VSVFETTIR LGGLLSA++LS D+VFL++  D     LP
Sbjct:  351 DTLWLMGLTEEFYNGRDWVRDHLTFNEVGMVSVFETTIRVLGGLLSAFELSRDEVFLERAKDLADRLLP 419
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A7S2PJG9_9STRA (alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJG9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.220e-19
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLMGM DEF +ARDWVRD LS +    VS FETTIR LGGLLSAYDLS D VFL+K  D
Sbjct:  333 DTLWLMGMKDEFWEARDWVRDHLSHDKVGDVSGFETTIRSLGGLLSAYDLSGDKVFLEKADD 394
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: B8C1C1_THAPS (alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1C1_THAPS)

HSP 1 Score: 88.6 bits (218), Expect = 5.640e-19
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLM + DEF +ARDWVR+ LS  H   VS FETTIR LGGLLSAYDLS D VFL+K  D
Sbjct:   41 DTLWLMDLKDEFYEARDWVRESLSHSHVGDVSAFETTIRSLGGLLSAYDLSRDAVFLEKAED 102
[Close]
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Match: A0A835YU30_9STRA (alpha-1,2-Mannosidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU30_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.330e-19
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 DTLWLMGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDVFLKKVTD 186
            DTLWLMG+ +EF +A  WVRD L+F +A +VSVFETTIRELGGLLSAYDLS + VFL+K  D
Sbjct:   41 DTLWLMGLKNEFAEATAWVRDSLTFANAGSVSVFETTIRELGGLLSAYDLSGEKVFLEKAQD 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22670.6033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3MDI2_9STRA8.540e-2272.88alpha-1,2-Mannosidase (Fragment) n=1 Tax=Spumella ... [more]
D8LGK4_ECTSI1.710e-2073.33alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6U4HU98_9STRA2.340e-2076.67alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva Tax... [more]
A0A7R9VYD3_9STRA6.500e-2067.74alpha-1,2-Mannosidase (Fragment) n=1 Tax=Pseudicty... [more]
A0A7S2UB93_9STRA2.050e-1969.35alpha-1,2-Mannosidase n=1 Tax=Attheya septentriona... [more]
A0A7S2EYT1_TRICV3.810e-1970.97alpha-1,2-Mannosidase (Fragment) n=1 Tax=Trieres c... [more]
A0A6H5L0M9_9PHAE5.210e-1962.32alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S2PJG9_9STRA5.220e-1972.58alpha-1,2-Mannosidase n=2 Tax=Skeletonema marinoi ... [more]
B8C1C1_THAPS5.640e-1969.35alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudo... [more]
A0A835YU30_9STRA8.330e-1969.35alpha-1,2-Mannosidase n=1 Tax=Tribonema minus TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22670contigH-paniculata_contig22670:113..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons1
Model size216
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.811573-CDS-H-paniculata_contig22670:112..3131622929629.811573-CDS-H-paniculata_contig22670:112..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22670 113..313 -
1691480942.8140001-CDS-H-paniculata_contig22670:112..3131691480942.8140001-CDS-H-paniculata_contig22670:112..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22670 113..313 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.8242738-UTR-H-paniculata_contig22670:313..3281622929629.8242738-UTR-H-paniculata_contig22670:313..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22670 314..328 -
1691480942.825605-UTR-H-paniculata_contig22670:313..3281691480942.825605-UTR-H-paniculata_contig22670:313..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22670 314..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22670.6033.1prot_H-paniculata_contig22670.6033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22670 113..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22670.6033.1

>prot_H-paniculata_contig22670.6033.1 ID=prot_H-paniculata_contig22670.6033.1|Name=mRNA_H-paniculata_contig22670.6033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MGMTDEFNDARDWVRDELSFEHANTVSVFETTIRELGGLLSAYDLSHDDV
FLKKVTDDRQDYLPRTN
back to top

mRNA from alignment at H-paniculata_contig22670:113..328-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22670.6033.1 ID=mRNA_H-paniculata_contig22670.6033.1|Name=mRNA_H-paniculata_contig22670.6033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig22670:113..328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACGTTGTGGCTCATGGGGATGACAGATGAGTTTAATGACGCGAGAGA
CTGGGTTCGGGACGAGTTGAGCTTTGAGCATGCAAATACCGTGAGCGTGT
TCGAGACGACTATTCGAGAACTGGGGGGACTACTATCGGCGTACGACCTT
TCCCACGATGATGTGTTCTTGAAAAAGGTGACAGACGACAGACAAGACTA
CCTCCCCCGGACAAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22670:113..328-

>mRNA_H-paniculata_contig22670.6033.1 ID=mRNA_H-paniculata_contig22670.6033.1|Name=mRNA_H-paniculata_contig22670.6033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig22670:113..328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATGACAGATGAGTTTAATGACGCGAGAGACTGGGTTCGGGACGA
GTTGAGCTTTGAGCATGCAAATACCGTGAGCGTGTTCGAGACGACTATTC
GAGAACTGGGGGGACTACTATCGGCGTACGACCTTTCCCACGATGATGTG
TTCTTGAAAAAGGTGACAGACGACAGACAAGACTACCTCCCCCGGACAAA
TATGGGGATGACAGATGAGTTTAATGACGCGAGAGACTGGGTTCGGGACG
AGTTGAGCTTTGAGCATGCAAATACCGTGAGCGTGTTCGAGACGACTATT
CGAGAACTGGGGGGACTACTATCGGCGTACGACCTTTCCCACGATGATGT
GTTCTTGAAAAAGGTGACAGACGACAGACAAGACTACCTCCCCCGGACAA
AT
back to top