mRNA_H-paniculata_contig22391.5962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22391.5962.1
Unique NamemRNA_H-paniculata_contig22391.5962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22391.5962.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.220e-30
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   10 WRGPMGNFAGLTAIEAELRGAGQLLSEPRMSVIRSRDGATELEWIASGTWPLPWLPRFIVRGSSSVKTGSDGKV 231
            WRGP+GN AGL  +E ELRG G LLS PRMSV  S+DGA  LEWIASGTWPLPWLPRFIV+G+S ++TG DGKV
Sbjct:  191 WRGPLGNNAGLAKVEEELRGLGSLLSAPRMSVFASKDGAKRLEWIASGTWPLPWLPRFIVKGASKLQTGPDGKV 264
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BLAST of mRNA_H-paniculata_contig22391.5962.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.780e-30
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   10 WRGPMGNFAGLTAIEAELRGAGQLLSEPRMSVIRSRDGATELEWIASGTWPLPWLPRFIVRGSSSVKTGSDGKV 231
            WRGP+GN AGL  +E ELRG G LL+ PR+SV  S+DGA  LEW+ASGTWPLPWLPRFIV+G+S+++TG DGKV
Sbjct:   18 WRGPLGNNAGLAKVEEELRGLGSLLNAPRLSVFASKDGAKRLEWVASGTWPLPWLPRFIVKGASTLQTGPDGKV 91
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BLAST of mRNA_H-paniculata_contig22391.5962.1 vs. uniprot
Match: A0A8J5XYQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYQ7_DIALT)

HSP 1 Score: 50.1 bits (118), Expect = 3.180e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   70 AGQLLSEPRMSVIR-SRDGATE--LEWIASGTWPLPWLPRFIVRGSSSVK 210
            +G+ L +P + V+  S  GA+   +EW+ASGTWPLPW PR +  GSS+++
Sbjct:  105 SGKFLVDPMLEVLSVSVTGASSARVEWLASGTWPLPWRPRALALGSSALE 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22391.5962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2A9_9PHAE3.220e-3072.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR29_ECTSI3.780e-3068.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5XYQ7_DIALT3.180e-546.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22391contigH-paniculata_contig22391:2609..2842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D7FR29
Hectar predicted targeting categoryother localisation
EggNOG OGs2C5V8@1,2SB4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.5283852-CDS-H-paniculata_contig22391:2608..28211622929621.5283852-CDS-H-paniculata_contig22391:2608..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22391 2609..2821 -
1691480938.789316-CDS-H-paniculata_contig22391:2608..28211691480938.789316-CDS-H-paniculata_contig22391:2608..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22391 2609..2821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.5461674-UTR-H-paniculata_contig22391:2821..28421622929621.5461674-UTR-H-paniculata_contig22391:2821..2842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22391 2822..2842 -
1691480938.8017867-UTR-H-paniculata_contig22391:2821..28421691480938.8017867-UTR-H-paniculata_contig22391:2821..2842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22391 2822..2842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22391.5962.1prot_H-paniculata_contig22391.5962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22391 2609..2821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22391.5962.1

>prot_H-paniculata_contig22391.5962.1 ID=prot_H-paniculata_contig22391.5962.1|Name=mRNA_H-paniculata_contig22391.5962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MGNFAGLTAIEAELRGAGQLLSEPRMSVIRSRDGATELEWIASGTWPLPW
LPRFIVRGSSSVKTGSDGKVG
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mRNA from alignment at H-paniculata_contig22391:2609..2842-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22391.5962.1 ID=mRNA_H-paniculata_contig22391.5962.1|Name=mRNA_H-paniculata_contig22391.5962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig22391:2609..2842- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCTAGCTGGCGGGGGCCGATGGGAAATTTTGCGGGACTAACAGCCAT
CGAGGCGGAGTTGCGGGGCGCCGGACAGTTGCTTTCGGAACCCAGGATGA
GTGTTATCCGATCGCGGGACGGAGCGACCGAGCTAGAGTGGATCGCGAGT
GGGACATGGCCGTTGCCTTGGCTGCCCAGGTTTATCGTGCGGGGGTCTTC
ATCCGTGAAGACGGGATCGGACGGAAAGGTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig22391:2609..2842-

>mRNA_H-paniculata_contig22391.5962.1 ID=mRNA_H-paniculata_contig22391.5962.1|Name=mRNA_H-paniculata_contig22391.5962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig22391:2609..2842- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAATTTTGCGGGACTAACAGCCATCGAGGCGGAGTTGCGGGGCGC
CGGACAGTTGCTTTCGGAACCCAGGATGAGTGTTATCCGATCGCGGGACG
GAGCGACCGAGCTAGAGTGGATCGCGAGTGGGACATGGCCGTTGCCTTGG
CTGCCCAGGTTTATCGTGCGGGGGTCTTCATCCGTGAAGACGGGATCGGA
CGGAAAGGTGGGGATGGGAAATTTTGCGGGACTAACAGCCATCGAGGCGG
AGTTGCGGGGCGCCGGACAGTTGCTTTCGGAACCCAGGATGAGTGTTATC
CGATCGCGGGACGGAGCGACCGAGCTAGAGTGGATCGCGAGTGGGACATG
GCCGTTGCCTTGGCTGCCCAGGTTTATCGTGCGGGGGTCTTCATCCGTGA
AGACGGGATCGGACGGAAAGGTGGGG
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