mRNA_H-paniculata_contig22349.5948.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22349.5948.1
Unique NamemRNA_H-paniculata_contig22349.5948.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: D7G288_ECTSI (D-lactate dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G288_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.560e-20
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTMKDNV+S+TVVLADGQ VKTSSRAKKSSAGYDLTRLF+GSEGTLG
Sbjct:  115 RYGTMKDNVLSMTVVLADGQEVKTSSRAKKSSAGYDLTRLFVGSEGTLG 163
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: A0A1H4JRH8_9HYPH (D-lactate dehydrogenase (Cytochrome) n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1H4JRH8_9HYPH)

HSP 1 Score: 88.6 bits (218), Expect = 2.320e-19
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTMKDNV+SLTVV+ DG++VKT+SRAKKSSAGYDLTRLFIG+EGTLG
Sbjct:  167 RYGTMKDNVLSLTVVMPDGEIVKTASRAKKSSAGYDLTRLFIGAEGTLG 215
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: UPI00126122C6 (FAD-binding protein n=1 Tax=Aureimonas psammosilenae TaxID=2495496 RepID=UPI00126122C6)

HSP 1 Score: 88.2 bits (217), Expect = 3.140e-19
Identity = 42/49 (85.71%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM++NVV+LTVVLADG+VVKT+SRA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  161 RYGTMRENVVALTVVLADGRVVKTASRARKSSAGYDLTRLFVGSEGTLG 209
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: A0A1H0HV71_9HYPH (D-lactate dehydrogenase (Cytochrome) n=2 Tax=Aureimonas TaxID=414371 RepID=A0A1H0HV71_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 3.170e-19
Identity = 41/49 (83.67%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM++NVVSLTVV+ADG++VKT+SRA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  161 RYGTMRENVVSLTVVMADGRIVKTASRARKSSAGYDLTRLFVGSEGTLG 209
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: A0A2T1HW62_9HYPH (FAD-binding oxidoreductase n=1 Tax=Alsobacter soli TaxID=2109933 RepID=A0A2T1HW62_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 3.170e-19
Identity = 42/49 (85.71%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM++NV+SLTVVLADG+VVKT+SRA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  165 RYGTMRENVLSLTVVLADGRVVKTASRARKSSAGYDLTRLFVGSEGTLG 213
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: N2JJ92_9PSED (Glycolate oxidase, subunit GlcD n=9 Tax=Pseudomonas TaxID=286 RepID=N2JJ92_9PSED)

HSP 1 Score: 87.8 bits (216), Expect = 4.330e-19
Identity = 40/49 (81.63%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM++NV+SLTVVLADGQ++KT++RA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  161 RYGTMRENVLSLTVVLADGQIIKTANRARKSSAGYDLTRLFVGSEGTLG 209
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BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: UPI0019C44FB5 (Lactate dehydrogenase n=2 Tax=Alsobacter metallidurans TaxID=340221 RepID=UPI0019C44FB5)

HSP 1 Score: 87.8 bits (216), Expect = 4.480e-19
Identity = 41/49 (83.67%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM++NV++LTVVLADG+VVKT+SRA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  177 RYGTMRENVIALTVVLADGKVVKTASRARKSSAGYDLTRLFVGSEGTLG 225
[Close]
BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: UPI000FFCA301 (FAD-binding protein n=1 Tax=Larkinella soli TaxID=1770527 RepID=UPI000FFCA301)

HSP 1 Score: 87.4 bits (215), Expect = 5.760e-19
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTMKDNV+SLTVVL DG VVKT S+A+KSSAGYDLTRLFIGSEGTLG
Sbjct:  150 RYGTMKDNVLSLTVVLPDGSVVKTGSKARKSSAGYDLTRLFIGSEGTLG 198
[Close]
BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: A0A512BLJ9_9HYPH (Oxidoreductase n=1 Tax=Microvirga aerophila TaxID=670291 RepID=A0A512BLJ9_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 6.000e-19
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTMKD V+SLT VLADGQ+VKT+SRA+KSSAGYDLTRLF+GSEGTLG
Sbjct:  167 RYGTMKDAVLSLTAVLADGQIVKTASRARKSSAGYDLTRLFVGSEGTLG 215
[Close]
BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Match: A0A7V7TXR6_9HYPH (FAD-binding protein n=2 Tax=Aureimonas leprariae TaxID=2615207 RepID=A0A7V7TXR6_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 6.640e-19
Identity = 41/49 (83.67%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 RYGTMKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG 147
            RYGTM+DNVVSL VVLADG++V+T++RAKKSSAGYDLTRLF+GSEGTLG
Sbjct:  242 RYGTMRDNVVSLAVVLADGRIVRTATRAKKSSAGYDLTRLFVGSEGTLG 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22349.5948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G288_ECTSI1.560e-2091.84D-lactate dehydrogenase, putative n=1 Tax=Ectocarp... [more]
A0A1H4JRH8_9HYPH2.320e-1985.71D-lactate dehydrogenase (Cytochrome) n=2 Tax=Hypho... [more]
UPI00126122C63.140e-1985.71FAD-binding protein n=1 Tax=Aureimonas psammosilen... [more]
A0A1H0HV71_9HYPH3.170e-1983.67D-lactate dehydrogenase (Cytochrome) n=2 Tax=Aurei... [more]
A0A2T1HW62_9HYPH3.170e-1985.71FAD-binding oxidoreductase n=1 Tax=Alsobacter soli... [more]
N2JJ92_9PSED4.330e-1981.63Glycolate oxidase, subunit GlcD n=9 Tax=Pseudomona... [more]
UPI0019C44FB54.480e-1983.67Lactate dehydrogenase n=2 Tax=Alsobacter metallidu... [more]
UPI000FFCA3015.760e-1987.76FAD-binding protein n=1 Tax=Larkinella soli TaxID=... [more]
A0A512BLJ9_9HYPH6.000e-1985.71Oxidoreductase n=1 Tax=Microvirga aerophila TaxID=... [more]
A0A7V7TXR6_9HYPH6.640e-1983.67FAD-binding protein n=2 Tax=Aureimonas leprariae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22349contigH-paniculata_contig22349:196..342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D7G288
Preferred nameDLD1
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006081,GO:0006082,GO:0006089,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0019752,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1903457
EggNOG free text desc.cytokinin dehydrogenase activity
EggNOG OGsCOG0277@1,KOG1231@2759
EC1.1.2.4
COG Functional cat.C
BiGG ReactioniMM904.YDL174C,iND750.YDL174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size147
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.1004446-CDS-H-paniculata_contig22349:195..3301622929620.1004446-CDS-H-paniculata_contig22349:195..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22349 196..330 -
1691480938.275115-CDS-H-paniculata_contig22349:195..3301691480938.275115-CDS-H-paniculata_contig22349:195..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22349 196..330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.1171563-UTR-H-paniculata_contig22349:330..3421622929620.1171563-UTR-H-paniculata_contig22349:330..342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22349 331..342 -
1691480938.2863104-UTR-H-paniculata_contig22349:330..3421691480938.2863104-UTR-H-paniculata_contig22349:330..342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22349 331..342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22349.5948.1prot_H-paniculata_contig22349.5948.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22349 196..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22349.5948.1

>prot_H-paniculata_contig22349.5948.1 ID=prot_H-paniculata_contig22349.5948.1|Name=mRNA_H-paniculata_contig22349.5948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MKDNVVSLTVVLADGQVVKTSSRAKKSSAGYDLTRLFIGSEGTLG
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mRNA from alignment at H-paniculata_contig22349:196..342-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22349.5948.1 ID=mRNA_H-paniculata_contig22349.5948.1|Name=mRNA_H-paniculata_contig22349.5948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig22349:196..342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATATGGAACCATGAAGGACAACGTTGTGAGCCTCACCGTGGTCCTGGC
CGACGGCCAGGTAGTGAAGACCTCCAGCAGAGCTAAGAAAAGCTCGGCGG
GTTACGACCTGACGCGGCTCTTCATCGGCAGCGAGGGCACCCTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22349:196..342-

>mRNA_H-paniculata_contig22349.5948.1 ID=mRNA_H-paniculata_contig22349.5948.1|Name=mRNA_H-paniculata_contig22349.5948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig22349:196..342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGACAACGTTGTGAGCCTCACCGTGGTCCTGGCCGACGGCCAGGT
AGTGAAGACCTCCAGCAGAGCTAAGAAAAGCTCGGCGGGTTACGACCTGA
CGCGGCTCTTCATCGGCAGCGAGGGCACCCTCGGTATGAAGGACAACGTT
GTGAGCCTCACCGTGGTCCTGGCCGACGGCCAGGTAGTGAAGACCTCCAG
CAGAGCTAAGAAAAGCTCGGCGGGTTACGACCTGACGCGGCTCTTCATCG
GCAGCGAGGGCACCCTCGGT
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