mRNA_H-paniculata_contig22345.5947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: D7G6L3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L3_ECTSI) HSP 1 Score: 137 bits (344), Expect = 1.530e-39 Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1
Query: 1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
GGR M ALYDLFAVSNHMGGMGHGHYTAFVRDW+ SGMS+ W VCDD DCRPV EA VRTA AYVLFYRRRPL
Sbjct: 102 GGRPMSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 174
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE) HSP 1 Score: 137 bits (344), Expect = 7.150e-36 Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1
Query: 1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
GGR M ALYDLFAVSNHMGGMGHGHYTAFVRDW+ SGMS+ W VCDD DCRPV EA VRTA AYVLFYRRRPL
Sbjct: 1620 GGRPMSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 1692
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2P145_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P145_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.260e-21 Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
+PA+YDLF V+NH G MG GHYTA R WDDSGM W + DD + +DE NV T AAYVLFYRRR
Sbjct: 524 IPAVYDLFGVTNHYGRMGFGHYTACCRQWDDSGMGEDWSLFDDSNVTEMDETNVITPAAYVLFYRRR 590
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A2D4CH16_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH16_PYTIN) HSP 1 Score: 84.3 bits (207), Expect = 9.070e-20 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQ-WFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
GG + YDLFAVSNH GGMG GHYTAF R+W+D+G W+ DD PV V+++AAY+LFY+RR L
Sbjct: 12 GGPSERQQYDLFAVSNHYGGMGFGHYTAFARNWNDAGEKYPGWYSFDDSQVSPVMPGQVKSSAAYILFYKRRCL 85
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A448ZDP4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP4_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18 Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
+PA YDLFAV NH G +G GHYT+F WD++G+S++W DD PV+ + V+++AAY+LFYRRR
Sbjct: 1160 VPADYDLFAVVNHYGRLGFGHYTSFAMQWDETGISKEWNAFDDSSVHPVEPSEVQSSAAYILFYRRR 1226
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2A1U5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1U5_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.900e-18 Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
+PA+YDLFAV+NH G MG GHYTA+ R W++ GMS QW DD + + + V T AAYVLFYRRR
Sbjct: 814 VPAIYDLFAVTNHYGRMGFGHYTAYARKWNEDGMSDQWAAFDDSNVGGIKPSMVVTPAAYVLFYRRR 880
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A1Z5JW65_FISSO (Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW65_FISSO) HSP 1 Score: 85.9 bits (211), Expect = 6.660e-18 Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDD-SGMSRQWFVCDDQDCRPVDEAN--VRTAAAYVLFYRRR 213
+PA+YDLFAV+NH G +G GHYTAF R W++ +G+S W + DD RPV AN + T AAYVLFYRRR
Sbjct: 1121 VPAIYDLFAVTNHYGRLGAGHYTAFARSWNERTGISDDWCLFDDSSVRPVSNANDAIVTPAAYVLFYRRR 1190
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A1Z5KR46_FISSO (Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR46_FISSO) HSP 1 Score: 85.5 bits (210), Expect = 9.090e-18 Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDD-SGMSRQWFVCDDQDCRPVDEAN--VRTAAAYVLFYRRR 213
+PA+YDLFAV+NH G +G GHYTAF R W++ +G+S W + DD RPV AN + T AAYVLFYRRR
Sbjct: 1127 VPAIYDLFAVTNHYGRLGAGHYTAFARSWNERTGISDDWCLFDDSSVRPVPNANDAIVTPAAYVLFYRRR 1196
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2S141_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S141_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 6.070e-17 Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEAN-------VRTAAAYVLFYRRR 213
+P++YDLFAV+NH G MG GHYTAF R W+++GM W DD + + V + + + T+AAYVLFYRRR
Sbjct: 143 VPSIYDLFAVTNHYGRMGFGHYTAFARRWNENGMESDWANFDDSNVQSVGDGHGHVNGVKMATSAAYVLFYRRR 216
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A6S8PAR9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8PAR9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.500e-16 Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 16 PALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
PA+YDLF V NH G MG GHYTAF R+W++ G W + DD V NV + AAYVLFYRRRP+
Sbjct: 1072 PAIYDLFGVVNHYGRMGFGHYTAFCREWNELGEMSSWSLFDDSAVSSVVGNNVVSPAAYVLFYRRRPV 1139 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22345.5947.1 >prot_H-paniculata_contig22345.5947.1 ID=prot_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDback to top mRNA from alignment at H-paniculata_contig22345:2752..2970+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22345.5947.1 ID=mRNA_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig22345:2752..2970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22345:2752..2970+ >mRNA_H-paniculata_contig22345.5947.1 ID=mRNA_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig22345:2752..2970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |