mRNA_H-paniculata_contig22343.5946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22343.5946.1
Unique NamemRNA_H-paniculata_contig22343.5946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.770e-13
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 QFRHKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGCMDV 135
            +FRH CS EA C+NTDG YEC CAEGY+GDG+ TG GC+DV
Sbjct:  341 EFRHACSPEAECHNTDGGYECLCAEGYAGDGLTTGQGCVDV 381
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.320e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   34 LEATCNNTDGSYECSCAEGYSGDGMITGTGCMDV 135
            L+ATC NTDGSYEC C+ GY GDG+ TGTGC+DV
Sbjct:  747 LQATCVNTDGSYECHCSTGYKGDGLSTGTGCVDV 780
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: A0A251U5L7_HELAN (Putative EGF-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U5L7_HELAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 HKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGC 126
            H C  +A C++TDGSYEC+C +GYSGDG   GTGC
Sbjct:  288 HDCDHDAQCDDTDGSYECTCRKGYSGDGRKDGTGC 322
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: A0A251U5I6_HELAN (Putative EGF-like domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U5I6_HELAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.280e-7
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 HKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGC 126
            H C  +A C++TDGSY+C+C +GYSGDG   GTGC
Sbjct:  155 HDCDHDAQCDDTDGSYKCTCRKGYSGDGRKNGTGC 189
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: A0A251U5L3_HELAN (Putative serine/threonine-protein kinase, active site protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U5L3_HELAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-7
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   22 HKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGC 126
            H C  +A C++TDGSY+C+C +GYSGDG   GTGC
Sbjct:  318 HDCDHDAQCDDTDGSYKCTCRKGYSGDGRKNGTGC 352
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: C3ZN42_BRAFL (EGF-like domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZN42_BRAFL)

HSP 1 Score: 48.1 bits (113), Expect = 2.330e-6
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   19 RHKCSLEATCNNTDGSYECSCAEGYSGDGM 108
            RH CS +ATCNNT GS+ C+C  GYS DG+
Sbjct:    9 RHNCSSDATCNNTVGSFTCTCKSGYSWDGL 38
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: UPI001C34FA19 (Uncharacterized protein n=2 Tax=Juglandaceae TaxID=16714 RepID=UPI001C34FA19)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:   28 CSLEATCNNTDGSYECSCAEGYSGDGMITGTGC 126
            C+  A C NT+GS+ CSC +GY GDG I GTGC
Sbjct:  300 CNATAKCTNTEGSFTCSCPDGYGGDGNINGTGC 332
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: UPI0016012DC9 (mucin-22-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016012DC9)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   19 RHKCSLEATCNNTDGSYECSCAEGYSGDGM 108
            RH C + ATC NTDGS+ C+C  GYSGDG+
Sbjct:  502 RHNCDIHATCTNTDGSFNCTCDPGYSGDGL 531
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: UPI00193A6B08 (fibrillin-1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6B08)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   22 HKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGCMDV 135
            H CS+ + CNNTDG YECSC +G+ GDG      C+DV
Sbjct: 1615 HNCSINSVCNNTDGGYECSCNDGFIGDGY----NCIDV 1648
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BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Match: A0A7J9F5G2_9ROSI (EGF-like domain-containing protein n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9F5G2_9ROSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.960e-6
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:   28 CSLEATCNNTDGSYECSCAEGYSGDGMITGTGCMDV 135
            C   ATC+NT GSY CSC EG+ GDG   GTGC  +
Sbjct:  322 CYEFATCHNTPGSYNCSCPEGFEGDGRKNGTGCRPI 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22343.5946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY1_ECTSI2.770e-1370.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFQ6_9STRA9.320e-1073.53EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A251U5L7_HELAN1.390e-762.86Putative EGF-like domain-containing protein n=1 Ta... [more]
A0A251U5I6_HELAN3.280e-760.00Putative EGF-like domain-containing protein n=1 Ta... [more]
A0A251U5L3_HELAN3.560e-760.00Putative serine/threonine-protein kinase, active s... [more]
C3ZN42_BRAFL2.330e-663.33EGF-like domain-containing protein (Fragment) n=1 ... [more]
UPI001C34FA193.190e-660.61Uncharacterized protein n=2 Tax=Juglandaceae TaxID... [more]
UPI0016012DC93.200e-663.33mucin-22-like n=1 Tax=Branchiostoma floridae TaxID... [more]
UPI00193A6B083.200e-655.26fibrillin-1-like n=1 Tax=Styela clava TaxID=7725 R... [more]
A0A7J9F5G2_9ROSI5.960e-658.33EGF-like domain-containing protein n=1 Tax=Gossypi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22343contigH-paniculata_contig22343:2269..2403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D7FVY1
KEGG koko:K05120
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
EC2.7.10.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.989003-CDS-H-paniculata_contig22343:2268..24031622929619.989003-CDS-H-paniculata_contig22343:2268..2403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22343 2269..2403 -
1691480938.2390769-CDS-H-paniculata_contig22343:2268..24031691480938.2390769-CDS-H-paniculata_contig22343:2268..2403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22343 2269..2403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22343.5946.1prot_H-paniculata_contig22343.5946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22343 2269..2403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22343.5946.1

>prot_H-paniculata_contig22343.5946.1 ID=prot_H-paniculata_contig22343.5946.1|Name=mRNA_H-paniculata_contig22343.5946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MVGFQFRHKCSLEATCNNTDGSYECSCAEGYSGDGMITGTGCMDV
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mRNA from alignment at H-paniculata_contig22343:2269..2403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22343.5946.1 ID=mRNA_H-paniculata_contig22343.5946.1|Name=mRNA_H-paniculata_contig22343.5946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig22343:2269..2403- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGTTTTCAGTTCCGACACAAGTGCTCCTTGGAAGCAACGTGCAA
CAACACGGATGGGAGTTACGAATGCTCTTGCGCTGAGGGATATTCGGGAG
ACGGGATGATCACGGGCACCGGATGCATGGACGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig22343:2269..2403-

>mRNA_H-paniculata_contig22343.5946.1 ID=mRNA_H-paniculata_contig22343.5946.1|Name=mRNA_H-paniculata_contig22343.5946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig22343:2269..2403- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGTTTTCAGTTCCGACACAAGTGCTCCTTGGAAGCAACGTGCAA
CAACACGGATGGGAGTTACGAATGCTCTTGCGCTGAGGGATATTCGGGAG
ACGGGATGATCACGGGCACCGGATGCATGGACGTCATGGTTGGTTTTCAG
TTCCGACACAAGTGCTCCTTGGAAGCAACGTGCAACAACACGGATGGGAG
TTACGAATGCTCTTGCGCTGAGGGATATTCGGGAGACGGGATGATCACGG
GCACCGGATGCATGGACGTC
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