mRNA_H-paniculata_contig2212.5857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2212.5857.1 vs. uniprot
Match: D7FQQ9_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ9_ECTSI) HSP 1 Score: 1320 bits (3415), Expect = 0.000e+0 Identity = 714/1291 (55.31%), Postives = 894/1291 (69.25%), Query Frame = 1
Query: 133 RSVLPSTFGHFKLSVTREDISYNTSCIPYGASASTVSEALGNIDSMAGLGGALVVRQGNGSSA-YSYGYTYLVSAVNSTLNLGAYVGFEVAGSGLQHGCSRVSTLGLWDDEVNWDTGVVPGPTDEVTIPADSSYIALTQDTEVSTLSMSGGALVTHDTTCLPGWTSAPGGTATSFGASKCYKLFSEPLLWGEAQSACASAVSRQEASETSCKKAGLRGGALRGALVTIQGLEENQWVGRLCRGDPLNRDCWIGMSRS----PNVQGYEQMEWDDLEVLVGESRYRSWTRNEPNNLHDEEGGQNCVAMHASKNRALDQGEARWHDAECASDKPFVCQAFGVSIPYTLTVTTEFDMLGGYIMGAGTVQSSTFAQVTGDEGEVGILRGATLVNSASGSIEWSAPLTVGWGGTLRNKGILTFMDSLYLSAAEDAEGFGTSDVGVGEEVIWPLVLNEEGGEFIVGEGAEVDLEWLLWNQGGTVSVAGALDVSGAGYSSFGNITIEASGEARFSNSSFLMHQTEAVAITLAADREVTGQDVEDSSQKAGYYRLAFGGEETSCIGYHASE--INAALEELVSVQEVGGVDVRRDGNGKLKTWQYGYRHVVTFDGARDLL--SSTLTLSCAGSMTTCGCVDVTGAIAGPESSGVGCGTAIFEFQN--TSTSAQFKPSDCLVQATVTLEAIREGGETMVSGGGVAVFSNGGQYVLSSIVEAHVKVESAAEVICAEWSTELVGGVNVTSGGVLWIAGGDWDALDAVRLLHAPPDTFGRTGTAISSPPSFHSFISGDVTVEIDGEMRLASASPAASTITIAGSLALSGGNLSGKGRIVVQDSTVIASTLESNADGTVNEEDASSLRNGVTLYMSGGGEWSGGSVYARDGAQVVNMGLFNVTADGAAIFGAGGNFGAKARLDFDGVAWYPNPLCGDSCMLEPTWNNSIGGVVVGSAGSDARLAFILQNEGTVRVEDKGLLDWCGAGEGKGAGNIHLPDANSTLRISNGKFILAPTANVSGSGVMQFSGGRGHELAR---EIAPLVLVSGGARVVVVASELLLGKGLKVMEHAMINFSAINSSINISGDLTLRDFGTIIFPAPTVENNLLPPFG--VGVSPPWGDREGDLDGSNGWGGASRCSVLVQGTFTWMGGTFAGNARVVSAGDSEWHQSTTEAPSSVSTASTATKRLLDSFHLINDGDTVWSKGDVVVSTGAAFVNRGTLRLLETAAGATSDTETDDSSSSESSYNAPRIRGPRKGEH------FCTDSDDSFWG------AESAGGAGSVGGGAADWA 3921
R V+P+ GHFKLS+TR+ YNTSC+ YGASA+ V+ AL +D + LGG+ VVR+G+G+S Y+YG+ Y + A NS+ NL V +V GSG+QHGC+R+STLG W+DE+NWDTGVVP TDEVTIP D+ ++ LT DT + TL ++GGALVTHD+TCLPGWT APGGT++SFG+ KCY+ F W AQSACASAVS+ + RGG+LRGALVT+QGLEEN WV R+CRGD L RDCW+GM+RS ++ + +EW +LE + GESRYRSW EP++ ++E G++CVA S+ RA DQGEARW+D EC ++KPFVCQAFG+S P++L+V+TE +M GGYI+GAGTV SST AQV+GD GEVGIL GAT++NS GS++WSA GWGG+L N G LTF ++ L AAED EGF + G WP V+NEEGGE + G+EVDLEWLLWN+GG+V V G LD +G GYSS G T+E GEARFS+SS +MHQ+E V +TL ADREVTGQDVE + +AGYYRLAFGGEETSCIGYHASE + ALEE+ S+ E GGV VRRDG+GKL+ WQYGYR+VVTFDG R L S+TL LSCAGS CGCVD++G I G S VGCG AIF+ + STSA+F S C VQ TV LE ++EGGET+VSGGGV F+NGGQY L S V A V+V S AEV+C + ELVG VNV+SGGVLW AG W+ALDAV LLH+ PDT GR+G+A++SPP F++ I GDV V+ D E+RLA+A+PAA T+ + GSL L+GG LSG+GRI V+ ST++ ++ E+DASSLRNG+TL M GGGEWSGG + ARDG VVN GL +A G FG GG+FGA+A LDFDG WY NPLCGD C +EP+ N GG ++G GS+ L F+L NEGTVRVED G L+WCG G+G G G + LP NSTL S G F+ +++V+G GV++FS G GHEL + E++PLV VSG V + LLLG+G+ V + ++ FS++ SS ISG+ TL D G IIFP P+V +L+ G V PWG EGD DG GWG ASR SV V+GTF WMGG +GNARVV AG SEW SS A+T K +L+S HL++ GD VWS N+GTL LLE +TE DD S RIR +KGE F + + ++ A + GGAGS GGGAA+WA
Sbjct: 22 RYVIPADEGHFKLSITRDGAGYNTSCLFYGASATAVAAALDALDPIDDLGGSTVVREGDGASPEYNYGFVYHIVASNSSENLVNSVDIDVVGSGVQHGCARLSTLGYWEDELNWDTGVVPSSTDEVTIPTDAGFVVLTADTAIDTLRVNGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDHASSWAAAQSACASAVSQLQPGPA-------RGGSLRGALVTVQGLEENNWVARMCRGDSLERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGESRYRSWATREPSDFENDEAGEHCVATQGSRKRAADQGEARWYDDECEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAQVSGDNGEVGILNGATVLNS--GSMDWSAAEACGWGGSLHNTGTLTFSGTILLEAAEDGEGFLADNAGA-----WPAVVNEEGGEVVFEAGSEVDLEWLLWNEGGSVVVEGELDSTGGGYSSSGTWTVEVGGEARFSDSSLIMHQSEVVVVTLQADREVTGQDVETFAGRAGYYRLAFGGEETSCIGYHASEETVEEALEEMSSIDEEGGVTVRRDGDGKLERWQYGYRYVVTFDGTRALSGGSNTLALSCAGSADDCGCVDISGGIEGTGGSRVGCGAAIFDSSDDRASTSAEFDSSTCRVQGTVELETLKEGGETVVSGGGVLAFANGGQYFLPSAVTADVEVMSGAEVVCPHSAAELVGAVNVSSGGVLWFAGAGWEALDAVSLLHSDPDTPGRSGSAVASPPGFNATIDGDVNVQGDAEVRLAAATPAA-TVVVLGSLTLAGGGLSGRGRISVEGSTLVVASAGDE------EDDASSLRNGLTLDMYGGGEWSGGGLKARDGVTVVNRGLLEASAAGGIWFGKGGDFGARAPLDFDGEQWYENPLCGDGCTVEPSCENRDGGEILGVEGSNVVLGFVLHNEGTVRVEDHGRLEWCGEGQGGGNGTVDLPGMNSTLVFSAGGFVFGGSSSVAGEGVLEFSAGTGHELPKGGQEVSPLVKVSGHGVVTFAGTYLLLGRGVTVADKGVLVFSSVTSSTLISGEATLMDDGLIIFPLPSVLASLVDAGGGSVDAEAPWGSGEGDQDGGAGWGAASRSSVTVEGTFVWMGGAISGNARVVCAGGSEWTDGNGGGGSSAFQATT--KHILNSLHLVSRGDVVWSTXXXXXXXXXXXXNQGTLLLLE-------ETEDDDGDDLPS-----RIRASQKGERPGWRDGFSSGTLEAMLDGGGSADAVATGGAGSAGGGAANWA 1277
BLAST of mRNA_H-paniculata_contig2212.5857.1 vs. uniprot
Match: A0A6H5JX22_9PHAE (C-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX22_9PHAE) HSP 1 Score: 663 bits (1710), Expect = 1.310e-221 Identity = 353/632 (55.85%), Postives = 441/632 (69.78%), Query Frame = 1
Query: 487 PGPTDEVTIPADSSYIALTQDTEVSTLSMSGGALVTHDTTCLPGWTSAPGGTATSFGASKCYKLFSEPLLWGEAQSACASAVSRQEASETSCKKAGLRGGALRGALVTIQGLEENQWVGRLCRGDPLNRDCWIGMSRS----PNVQGYEQMEWDDLEVLVGESRYRSWTRNEPNNLHDEEGGQNCVAMHASKNRALDQGEARWHDAECASDKPFVCQAFGVSIPYTLTVTTEFDMLGGYIMGAGTVQSSTFAQVTGDEGEVGILRGATLVNSASGSIEWSAPLTVGWGGTLRNKGILTFMDSLYLSAAEDAEGFGTSDVGVGEEVIWPLVLNEEGGEFIVGEGAEVDLEWLLWNQGGTVSVAGALDVSGAGYSSFGNITIEASGEARFSNSSFLMHQTEAVAITLAADREVTGQDVEDSSQKAGYYRLAFGGEETSCIGY------HASEINAALEELVSVQEVGGVDVRRDGNGKLKTWQYGYRHVVTFDGARDLL--SSTLTLSCAGSMTTCGCVDVTGAIAGPESSGVGCGTAIFEFQN--TSTSAQFKPSDCLVQATVTLEAIREGGETMVSGGGVAVFSNGGQYVLSSIVEAHVKVESAAEVICAEWSTELVGGVNVTSGGVLWIAG 2340
P + +VTIP D+ ++ LT DT + TL ++GGALVTHD+TCLPGWT APGGT++SFG+ KCY+ F W AQSACA AVS+ +A + RGGALRGALVT+QGL EN WV R+CRGD RDCW+GM+RS ++ + +EW +LE + GE RYRSW EP++ ++E G+NCVA+ S+ RA DQGEARW+D C ++KPFVCQAFG+S P++L+V+TE +M GGYI+GAGTV SST A+V+GD GEVGIL GATL+NS GS++WSA GWGG+L N G LTF ++ L AAED EGF + + G WP V+N+EG E + G+EVDLEWLLWN+GG+V V G LD +G GYSS G T+E GEARFS+SS +MHQ+E V +TL ADRE G + ++ + S I + H E ALEE+ S+ E GGV VRRDGNGKLK WQYGYR+VVTFDG R L S+TL LSCAGS CGCVD++GAI G SS VGCG AIF+ + STSA+F S C VQ TV LE ++EGGET++SGGGV VF+NGGQY L S V A V+V S AEV+C + ELVG VNV+SGGVLW AG
Sbjct: 11 PNHSRQVTIPTDAGFVVLTADTAIDTLRINGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDRASSWPAAQSACARAVSQLQAGLS-------RGGALRGALVTVQGLGENNWVARMCRGDSQERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGELRYRSWATREPSDFENDEAGENCVAIQGSRKRAADQGEARWYDDGCEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAKVSGDNGEVGILNGATLLNS--GSMDWSAAEACGWGGSLHNTGTLTFSGAILLEAAEDGEGFLSDNAGA-----WPAVVNDEGAEVVFEAGSEVDLEWLLWNEGGSVLVEGELDSTGGGYSSSGTWTVEVGGEARFSDSSLIMHQSEVVVVTLQADRE-------------GLWGVST--SQPSAIPHATPPPPHVLE-QEALEEMSSIDEEGGVTVRRDGNGKLKRWQYGYRYVVTFDGTRALSGGSNTLALSCAGSADDCGCVDISGAIEGTGSSRVGCGAAIFDSSDDGASTSAEFDSSTCRVQGTVELETLKEGGETVISGGGVLVFANGGQYFLPSAVTADVEVMSGAEVVCPNSAAELVGAVNVSSGGVLWFAG 612
BLAST of mRNA_H-paniculata_contig2212.5857.1 vs. uniprot
Match: A0A7S3HNV4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNV4_9STRA) HSP 1 Score: 233 bits (593), Expect = 2.150e-58 Identity = 307/1195 (25.69%), Postives = 474/1195 (39.67%), Query Frame = 1
Query: 424 CSRVSTLGLWDDEVNWDTGVVPGPTDEVTIPADSSYIALTQDTEVSTLSMSGGALVTHDTTCLPGWTSAPGGTATSFGASKCYKLFSEPLLWGEAQSACASAVSRQEASETSCKKAGLRGGALRGALVTIQGLEENQWVGRLCRG----DPLNRDCWIGMSRSPNVQGYEQMEW---------DDLEVLVGESRYRSWTRNEPNNLHDEEG-----GQNCVAMHASKNRALDQGEARWHDAECASDKPFVCQAFGVSIPYTLTVTTEFDMLGGYIMGAGTVQSSTFAQVTGDEGEVGILRGATLVNSASGSIEWSAPLTVGWGGTLRNKGILTFMDSLYLSAAEDAE---GFGTSDVGVGEEVIWPLVLNEEGGEFIVGEGA---EVDLEWLLWNQGGTVSVAGALDV---SGAGYSSFGNITIEASGEARFSNSSFLMHQTEAVAITLAADREVTGQDVEDSSQK---------AGYYRLAFGGEETSCIGYHA--SEINAALEELVSVQEVGGVDVRRDGNGKLKTWQYGYRHVVTFDGARDLLSS----TLTLSCAGSMTTCGC-------VDVTGAIAGPESSGVGCGTAIFEFQNTSTSAQFKPSDCLVQATVTLEAIREGGETMVSGGGVAVFSNGGQYVLSSIVEAHVKVESAAEVICAE---WSTELVGGVNVTSGGVLWIAGGDWDALDAVRLLHAPPDTFGRTGTAISSPPSFHSFISGDVTVEIDGEMRLASASPAASTITIAGSLALSGGNLSGKGRIVVQDSTVIASTLESNADGTVNEEDASSLRNGVTLYMSGGG--EWSGGSVYARDGAQVVNMGLFNV-TADGAAIFGAG---------------------------GNFGAKARLDFDGVAWYPNPLCGDSCMLEPTWNNSIGGVVVGSAGSDARLAFILQ----NEGTVRVEDKGLLDWCGAGEGKGAGNIHLPDANS--TLRISNGKFILAPTANVSGSGVMQFSGGRGHELAREIAPLVLVSGGARVVVVA----SELLLGKGLKVMEHAMINFSAINSSINISGDLTLRDFGTIIFPAPTVENNLLPPFGVGVSPPWGDREGDLDGSNGWGGASRCSVLVQGTFTWMGGTFAGNARVVSAGDSEWHQSTTEAPSSVSTASTATKRLLDSF-HLINDGDTVWSKGDVVVSTGAAFVNRGTLRLL 3729
C+ T+G WDD WDT VP EVTIP D+ I L+QD V++L+M GG ++ +DT C GW+ PG ++ KCY+L +P+ + EA+ C +AV GL G+ LV I+ E V R+CRG ++ CWIG+ + G W D ++ VG + W R+EPNN EG G+ C A+ + L + W+D C KPFVCQ FG + YTLTV + G + G G + + A D V + R + S G+ + + G +L M YL ++ +G + + V G ++G G + + + G T+ V+ DV GA S AS + S + + +A + ++ EV G+ D ++ G YRL G + T CI Y+A SE+ L L SV + GV VRR G+ +++GY + + D R + ++ + C G CGC VD TG P SS TA T S P+ C+V T+ + I T SG G V G + I + V + V+ ++ WS G++VT GG L +AG W + D+ L+AP T R S S F+ + G + S+ P+++ +G+ GG + G+ + + + NA GT SLR G+TL+++ +W+ G++ DGA G + +DGA G G +G + + G WY NPLCGD C+ G VV D ++ F L E T+ + + G GN + D +S L +S G+ ++ T + G G + +GG H+L+ I + + GG V + + GL + + + +++I I D+ LRD I FP GV D + D A R + T W GGT G A + G+ K+ + S L+N G W GD++ S F+N GT++++
Sbjct: 210 CAPFRTIGQWDDPYRWDTQQVPTSLTEVTIPVDAGVIKLSQDVSVASLTMLGGHILGYDTYCPFGWSVEPGDSS----GIKCYQLHEKPVPFNEAERTC-NAVK------------GL--GSESRHLVHIRDRAELLVVQRMCRGLTGYAAHSKGCWIGLW---DQNGSGDFRWISPVAIGTPTDPDLDVG--MFLDWRRDEPNNHTISEGLETPGGERCAALVPWQEDPLLLEQGSWNDDSCNVAKPFVCQIFGNTARYTLTVHGHTTLTSGRLEG-GIIATGAGAT---DISHVTVFRSGRIHISTGGASCALGKVILQDGASLEVHSNAFTMGDAYLGEPVNSTLSAALQNHTLGPSFQTMQSNVYVAAGATLLLGAGTMYQNITINARAFVDG-TLFVSANTDVYLYQGADMSKSTVTVAAASSKVHLSGYNSRLSTYDAYELQVSHRGEVNGEFYRDFHREEANMHLGNTTGVYRLRVGADVTRCIPYNATASELTTILNALPSVTQRSGVTVRRYGSPTDPRFRFGYTYRIETDSVRTQFYAQGPLSMAIHCYGFDNGCGCAETKVVLVDATGMPQCPASS-----TA------TERSPLSDPNACVVAPTLGVSVISSLAHTSASGAGSIVVEEG-VHRFPPISTCTLAVTAGTGVVASDTITWS-----GISVTGGGRLVVAGTSWASWDSTYALYAPEWTTKRGELRSLSTAS--PFLMSVDKFYLSGLGSVLSSCPSSNMTWNSGTW--DGGIIGGRSTLNIMQAL--------NATGTTK-----SLRYGMTLFINEAATVKWTSGNISLADGADFTVEGQLVIDNSDGAEELFIGMAQLLEAPASDPTGAVLLSQDPGRDWHGYYGDELTAELRG-GWYQNPLCGDQCLATNHLTIRAAGAVV--CRDDTQVTFSLPLDLVGESTLTIRSNVDITMASGGI---CGNKVVVDISSGTKLELSGGRMLMEATCTIQGQGDLLVTGGS-HDLSFSIDARITIEGGTMVWPDSRGSGQTITFNGGLVMQKTGALIVFPFSTNIVIYDDVYLRDESLIQFPL----------IGVAAQASLFDEQDAPDP------APRGILTSNKTMRWEGGTLRGKADFKANGELFLDGG---------------KKYIKSLAKLVNQGHCEWGTGDLISSDSGDFLNLGTVQMM 1303
BLAST of mRNA_H-paniculata_contig2212.5857.1 vs. uniprot
Match: A0A7R9WLR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WLR6_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.660e-5 Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 130 SRSVLPSTFGHFKLSVTREDISYNTSCIPYGASASTVSEALGNIDSMAGLGGAL---------VVRQGNGSSAYSYGYTYLVSAVNSTLNLGA--YVG-----FEVAGSGLQHGCSRVS 438
S S + ++ G +KL++T + ++ TSC+PYGAS+STV A+ + L GA+ V R+G+GSS +++GY Y + ST ++GA +G E+AG G + GCS S
Sbjct: 379 SDSPVATSLGLYKLTLTFQGLAQTTSCLPYGASSSTVQAAIDGLFDF-NLDGAIDDEDWGHIEVSREGDGSSQWAFGYVYSFESNGSTSSIGASGVLGSGAPLIEIAGMGDEIGCSDAS 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2212.5857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2212.5857.1 >prot_H-paniculata_contig2212.5857.1 ID=prot_H-paniculata_contig2212.5857.1|Name=mRNA_H-paniculata_contig2212.5857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1308bp LLVAGWNVLPVSSSSVTWQSDSISISITGSAPELRNFTLDLQASRSVLPSback to top mRNA from alignment at H-paniculata_contig2212:4158..17278- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2212.5857.1 ID=mRNA_H-paniculata_contig2212.5857.1|Name=mRNA_H-paniculata_contig2212.5857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13121bp|location=Sequence derived from alignment at H-paniculata_contig2212:4158..17278- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2212:4158..17278- >mRNA_H-paniculata_contig2212.5857.1 ID=mRNA_H-paniculata_contig2212.5857.1|Name=mRNA_H-paniculata_contig2212.5857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7848bp|location=Sequence derived from alignment at H-paniculata_contig2212:4158..17278- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |