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Homology
BLAST of mRNA_H-paniculata_contig2196.5801.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI) HSP 1 Score: 245 bits (625), Expect = 2.680e-67 Identity = 255/643 (39.66%), Postives = 310/643 (48.21%), Query Frame = 1
Query: 271 VMTSELSELRAELWRTRDDLERMKSSSNSRTPTKARAPRSHPSPRIFDRRRHNAE--------SATDKSTADRRKGRYDHQYPLEDDKRQDRHLIAADSAAAAGGGDVKESPEREGKSRRSR-GSGVESGPTSPPTSRESVVGSESNGAGNTPAVARDGS-----GSGHRRIYDSSPGVGAE---TEATLCNLEFEGVAFKNWTEEASSIAVRLIEEVKALRWERETWRNEQATAARAFAELRT----RADALEGRLIEAEAEEKRSRDTLAHAQQAERQQSRATERAKADLRAAREQAGALHA--------------------------------HELGLGAGTAGGLREQLRREREGTDALQRRLDTARTKLAGYERERKEWRVWKARLEEMRRSWGNQLKKVAKKMRAKSEENAALKVRVAETERARDRADAEAFRLRDNLDRLTEQRDNLLLGATRAGH-----ASSPADALAEXXXXXXXXXXXXXXXXXXXXTANTNLGRDRGIDGINRGLRLGGAWGELFPGEGGHGGGNDXXXXGARRQGDREGXXXXXXXXXGALEVSAEELERARAEAKLAKVAVQQERLKRDGAMREKDEAVRQLHRLMGAARRAVGKRDNKLRSSRLETEVVWNALTEAVR 2025
+ SELSELRAELWRTRDDLER+KS P+ +PR H FDRRRH A +A + DR R+ H + D L A A GG ++ P GSG + +P + G+ S+G+ + + GS GS +++ G +E E TLCNLE EG AFKNWTEEASSIAVRLIEEVK LRWE+ +W + A +AD LE RL AEA+ +R+++ LA AQQ ER A L A L E LRRE+EG DALQRRLD AR A +E+ERKEWR ++ENAAL+ RV E ERARDRADA++ R+ L RLTEQRDNLLLGATR G ASSPA+ LAE XXXXXXX T++G GA GEL +LE+AR+EAKLA+VA QQERL+R+ A REK+EAVRQLHRLMGAARRAVG+RD++L+SSR+ETEVVWNALTEAVR
Sbjct: 1 MAASELSELRAELWRTRDDLERIKS--RGTPPSADCSPRRH-----FDRRRHRASPSPTLAATTACEVRNKDRDYRRHRHSEQHKGDG-----LEAGGGARGDSGGGIRSXPXXXXXXXXXXPGSGADYDDEAP----RGLGGTASSGSSHGGRQLKFGSSRGRVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEERLGLAEADGRRAQEALARAQQD-------VERXXXXXXXXXXXAEGLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASARHEKERKEWRSSXXXXXXXXXXXXXXXXXXXXXXXXMTKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGLVASSPAETLAELLAAXXXXXXXDA----------TDVGP--------------GADGELEA-----------------------------------------QLEQARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 555
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-00_003480.1 |
| Exons | 3 |
| Model size | 2842 |
| Cds size | 1761 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2196.5801.1 >prot_H-paniculata_contig2196.5801.1 ID=prot_H-paniculata_contig2196.5801.1|Name=mRNA_H-paniculata_contig2196.5801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=587bp
MTSELSELRAELWRTRDDLERMKSSSNSRTPTKARAPRSHPSPRIFDRRR
HNAESATDKSTADRRKGRYDHQYPLEDDKRQDRHLIAADSAAAAGGGDVK
ESPEREGKSRRSRGSGVESGPTSPPTSRESVVGSESNGAGNTPAVARDGS
GSGHRRIYDSSPGVGAETEATLCNLEFEGVAFKNWTEEASSIAVRLIEEV
KALRWERETWRNEQATAARAFAELRTRADALEGRLIEAEAEEKRSRDTLA
HAQQAERQQSRATERAKADLRAAREQAGALHAHELGLGAGTAGGLREQLR
REREGTDALQRRLDTARTKLAGYERERKEWRVWKARLEEMRRSWGNQLKK
VAKKMRAKSEENAALKVRVAETERARDRADAEAFRLRDNLDRLTEQRDNL
LLGATRAGHASSPADALAELLAAAAAGVATGAGTGTRASTANTNLGRDRG
IDGINRGLRLGGAWGELFPGEGGHGGGNDGNGGGARRQGDREGGGGESGS
AGGALEVSAEELERARAEAKLAKVAVQQERLKRDGAMREKDEAVRQLHRL
MGAARRAVGKRDNKLRSSRLETEVVWNALTEAVREE* back to topmRNA from alignment at H-paniculata_contig2196:15624..19430+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2196.5801.1 ID=mRNA_H-paniculata_contig2196.5801.1|Name=mRNA_H-paniculata_contig2196.5801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3807bp|location=Sequence derived from alignment at H-paniculata_contig2196:15624..19430+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATAGGGAGAGAGAGACAGCGACAGAGCGAAAGAGGGAGAACGAGAGA
GCGAGAACGAGAGAGAGTGAAAGATCTACAGAAAGAAAAAATTCGAAGGC
ATTGTATTCTGTGCTGTTGGGTTCCACAGCGTCTCTCGATGGGCGCCAGT
CAACCCAGAGGGTAAGGCATTGGAACGAAGCTCAACGGGGTCACTTTGGA
CTGGATAAGTCTCGCCGCCTCTCCATACTAGTCTCTTCAGTGCTACTTGT
AGATGGTGTCCTCTGGCAAGATATTTGAAGCTCGAGCAATAGGTTCTGTA
GGAGCTCGTGGGTTTCAAAATCACCTCGCACCCAATAGTCGAGGCCATAT
GCACGAGATGTTTGTGCTGTTGGCGGTTCACTTTCGCCTGCTTCGTCTGT
CGTATTATCTCGGGGCTCCGACGTCCCTCTTCGTCTCTGTAAAGAGGTAT
CGTATTTTTCAAAAAGCCTAGACTGTTGCTCGCGTGGTGCTGACTACTGA
TGTTGGGTACAGTAGTCAAGTGCTCATGCCTCCACCCAACATCATAGCTG
TCGACACCATGTTTTTTGGCATCGTAGCATATTGGTTACTTCCCTTTGCC
TGCATTCTCTTCACGATACAAAAGTACTGACTGTAAGCTGTAACAACTCG
ACGCACCCGCGCCGAAGTGAAGTGCCTAGTCAGCGCAGTGTAAATGATCA
ATTCTCCGAGAGCCGAACACGCTACACGTTCGCCCCCCCCATACTTGACC
ATCACCATATCAGGCGTTAGCTTACACAGGAAAAACTGCAGTCCTTCAGC
GCATCCAAACAAACAAGACAAGGCGGAGAGGGTGGTGCTGCCTGGAACGC
CCGCCCGACCAAACAAAACATCGTCATGACGTCCGAACTGTCTGAGCTTC
GTGCCGAGTTGTGGCGAACGCGAGACGATCTCGAGCGCATGAAGTCATCC
TCGAATTCCCGCACGCCGACGAAAGCCAGAGCCCCTCGCTCTCATCCCAG
TCCCCGCATTTTCGACCGCCGACGGCATAACGCCGAGAGCGCTACGGACA
AAAGCACGGCTGATCGAAGGAAAGGTCGCTATGACCATCAATACCCGTTG
GAGGATGACAAGCGACAGGATCGACATCTAATTGCTGCCGATTCCGCTGC
TGCTGCAGGAGGCGGGGACGTGAAGGAAAGCCCCGAACGCGAGGGCAAAA
GCAGGCGTAGCAGAGGAAGTGGAGTAGAAAGCGGACCAACGAGCCCCCCA
ACGAGCAGAGAGTCTGTTGTCGGGTCTGAAAGCAACGGCGCCGGTAATAC
ACCTGCTGTCGCCAGAGACGGCAGTGGGAGTGGTCACCGGCGAATCTATG
ACAGCAGCCCAGGGGTTGGTGCCGAGACCGAAGCTACCCTATGCAACTTA
GAGTTCGAGGGCGTCGCGTTTAAGAACTGGACGGAAGAAGCCTCGTCGAT
TGCCGTTCGTCTCATAGAAGAAGTCAAGGCCTTGCGCTGGGAACGGGAAA
CGTGGCGCAACGAACAGGCCACGGCCGCCCGCGCTTTCGCTGAATTGCGA
ACTCGCGCCGATGCCCTCGAGGGGCGTTTGATCGAGGCCGAGGCTGAGGA
GAAAAGGTCCCGCGATACCCTAGCGCACGCCCAACAAGCGGAGAGGCAGC
AATCCCGCGCGACCGAGAGAGCCAAGGCGGATTTGCGCGCGGCGCGCGAA
CAGGCGGGGGCGTTACACGCGCACGAGTTGGGATTGGGGGCGGGGACGGC
GGGAGGATTGAGGGAGCAGCTGCGGAGGGAGAGGGAAGGGACAGATGCGC
TGCAGAGGAGGCTGGATACTGCCAGGACCAAGCTGGCCGGGTACGAGCGC
GAGCGGAAGGAGTGGCGGGTGTGGAAGGCCCGGCTTGAAGAGATGCGACG
GTCGTGGGGAAATCAGCTCAAGAAGGTGTGTCCTGGCGGAGTGATGAAAT
ATCAATGGTCTTTGGGTTTTTAGTATGACTTAGTTACCAATCCAACCATT
AGCTTCCATAGGCGCGCTGAGGCTGGTACTGCCATGAAGGAAAGGTAAGG
TTAGCGTATGAAGGCAGTATTTCGCGCACATCACCCACTTGGCCCCACGT
CACTCTCGCTCTCCGCGAACGTATTGTCTTCAGCAAGCCAAGTTCCCTTC
TTCTGGTCTGGGTTCGACTCATTCTTTGAATTGAAACATTTTGGCACACA
AATATCTGTTTTCGTGACACATACTCGTCTTTGCAAAACCTACGACCCTC
CCCCGTCTCCGCCTCCCTCATTCCCCCCGTTCTTCCAGGTGGCGAAAAAG
ATGCGAGCGAAGTCAGAAGAAAACGCAGCCTTGAAGGTAAGGGTGGCCGA
AACGGAAAGGGCAAGAGACCGCGCCGACGCCGAGGCTTTCCGACTGCGCG
ACAATCTCGACCGGCTGACCGAACAGCGAGACAACCTTCTACTGGGCGCA
ACACGCGCCGGACACGCCTCTTCTCCTGCCGATGCCTTGGCGGAACTACT
CGCAGCCGCCGCCGCGGGTGTAGCCACTGGAGCAGGGACCGGCACACGAG
CCAGCACCGCAAACACCAACCTCGGCCGGGATAGAGGAATCGACGGTATA
AACCGAGGATTAAGACTAGGCGGGGCTTGGGGTGAGCTGTTCCCAGGAGA
GGGTGGCCATGGTGGTGGTAACGATGGTAACGGTGGCGGCGCCAGGCGCC
AGGGGGACCGGGAGGGTGGGGGCGGCGAGAGCGGGAGCGCAGGTGGGGCG
CTCGAGGTGTCGGCAGAGGAATTGGAGCGAGCACGGGCAGAGGCTAAGTT
AGCAAAGGTTGCTGTGCAGCAGGAGAGGTTGAAGAGAGATGGGGCGATGA
GGGAGAAGGATGAGGCTGTTCGACAATTACATCGGTTGATGGGAGCGGCG
CGGCGGGCGGTGGGCAAGAGAGATAACAAGTTGAGGTCCAGTCGGCTAGA
GACCGAGGTCGTCTGGAACGCGCTGACAGAGGCGGTGCGAGAAGAATGAT
ACCAATCTCGTTTGAATTATTTGTGTATGGACGGACACCGAACGACCTTG
CCGTTGGCCGTTATTTCTTTGGGTAGTTCCTTGTTTTTTTCGTGCTTTCC
GCGTTCTATGAGTTTCTGTGTTATTTTCTAGTTCCACTTTTGTTCTAGAG
ATTGTGTTTGTGTCGAGGTGTGTGATTTTATTTGAACGTTGAGTCATTTC
TTGTCAATTTGAAGAGCAATATCTCTCTCTACTCCTTGGGGTTGAGCAGG
TGATGGGCAACACCAATAGTTGTGTGCGTGTATACATAGATTTTACCAGG
CTGTGCCCTCTTGCCCATCAATATGTTTTGTGTTTTTTTGTCAAGTCTGG
GAGTCGTGCCGAGCGCCTAAAATAGAGCAAAAATTTCGATGGCCGTTTTT
TTGGCAATTTACGGTCGCGGACTTTTTTTGGGCGACGTTTAACGATTGCG
TGCATGGACGAAGAGAGGACATGGACGAGGTGTATAGATTCATTGTGCTT
GGTTTGTGAAGACTGGCATAGGCGAGTGGCTGATTCGAACTCCGGCATGA
GGTTCAGCATATCCCTAAATACAAAGGATATGTTGGCTACTGCACCAAAG
CTGGCTATTCTATCACCTCCAAGTTCCTGCGGGTTCATTCCGTTTCACGC
AAAAACAATATGACGCCTTCTTGTGCACCGACGCCTGTAATACGACCTTG
GATACCGTCTATGCAGGAGCTCATTTCGTAGAATTATCGAGATTAGCTGC
CACCCATCCATCTCCTCAATCTCCGCGAAACACCTAAGTATGTTCAAATA
AAACGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2196:15624..19430+ >mRNA_H-paniculata_contig2196.5801.1 ID=mRNA_H-paniculata_contig2196.5801.1|Name=mRNA_H-paniculata_contig2196.5801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3522bp|location=Sequence derived from alignment at H-paniculata_contig2196:15624..19430+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCCGAACTGTCTGAGCTTCGTGCCGAGTTGTGGCGAACGCGAGA
CGATCTCGAGCGCATGAAGTCATCCTCGAATTCCCGCACGCCGACGAAAG
CCAGAGCCCCTCGCTCTCATCCCAGTCCCCGCATTTTCGACCGCCGACGG
CATAACGCCGAGAGCGCTACGGACAAAAGCACGGCTGATCGAAGGAAAGG
TCGCTATGACCATCAATACCCGTTGGAGGATGACAAGCGACAGGATCGAC
ATCTAATTGCTGCCGATTCCGCTGCTGCTGCAGGAGGCGGGGACGTGAAG
GAAAGCCCCGAACGCGAGGGCAAAAGCAGGCGTAGCAGAGGAAGTGGAGT
AGAAAGCGGACCAACGAGCCCCCCAACGAGCAGAGAGTCTGTTGTCGGGT
CTGAAAGCAACGGCGCCGGTAATACACCTGCTGTCGCCAGAGACGGCAGT
GGGAGTGGTCACCGGCGAATCTATGACAGCAGCCCAGGGGTTGGTGCCGA
GACCGAAGCTACCCTATGCAACTTAGAGTTCGAGGGCGTCGCGTTTAAGA
ACTGGACGGAAGAAGCCTCGTCGATTGCCGTTCGTCTCATAGAAGAAGTC
AAGGCCTTGCGCTGGGAACGGGAAACGTGGCGCAACGAACAGGCCACGGC
CGCCCGCGCTTTCGCTGAATTGCGAACTCGCGCCGATGCCCTCGAGGGGC
GTTTGATCGAGGCCGAGGCTGAGGAGAAAAGGTCCCGCGATACCCTAGCG
CACGCCCAACAAGCGGAGAGGCAGCAATCCCGCGCGACCGAGAGAGCCAA
GGCGGATTTGCGCGCGGCGCGCGAACAGGCGGGGGCGTTACACGCGCACG
AGTTGGGATTGGGGGCGGGGACGGCGGGAGGATTGAGGGAGCAGCTGCGG
AGGGAGAGGGAAGGGACAGATGCGCTGCAGAGGAGGCTGGATACTGCCAG
GACCAAGCTGGCCGGGTACGAGCGCGAGCGGAAGGAGTGGCGGGTGTGGA
AGGCCCGGCTTGAAGAGATGCGACGGTCGTGGGGAAATCAGCTCAAGAAG
ATGACGTCCGAACTGTCTGAGCTTCGTGCCGAGTTGTGGCGAACGCGAGA
CGATCTCGAGCGCATGAAGTCATCCTCGAATTCCCGCACGCCGACGAAAG
CCAGAGCCCCTCGCTCTCATCCCAGTCCCCGCATTTTCGACCGCCGACGG
CATAACGCCGAGAGCGCTACGGACAAAAGCACGGCTGATCGAAGGAAAGG
TCGCTATGACCATCAATACCCGTTGGAGGATGACAAGCGACAGGATCGAC
ATCTAATTGCTGCCGATTCCGCTGCTGCTGCAGGAGGCGGGGACGTGAAG
GAAAGCCCCGAACGCGAGGGCAAAAGCAGGCGTAGCAGAGGAAGTGGAGT
AGAAAGCGGACCAACGAGCCCCCCAACGAGCAGAGAGTCTGTTGTCGGGT
CTGAAAGCAACGGCGCCGGTAATACACCTGCTGTCGCCAGAGACGGCAGT
GGGAGTGGTCACCGGCGAATCTATGACAGCAGCCCAGGGGTTGGTGCCGA
GACCGAAGCTACCCTATGCAACTTAGAGTTCGAGGGCGTCGCGTTTAAGA
ACTGGACGGAAGAAGCCTCGTCGATTGCCGTTCGTCTCATAGAAGAAGTC
AAGGCCTTGCGCTGGGAACGGGAAACGTGGCGCAACGAACAGGCCACGGC
CGCCCGCGCTTTCGCTGAATTGCGAACTCGCGCCGATGCCCTCGAGGGGC
GTTTGATCGAGGCCGAGGCTGAGGAGAAAAGGTCCCGCGATACCCTAGCG
CACGCCCAACAAGCGGAGAGGCAGCAATCCCGCGCGACCGAGAGAGCCAA
GGCGGATTTGCGCGCGGCGCGCGAACAGGCGGGGGCGTTACACGCGCACG
AGTTGGGATTGGGGGCGGGGACGGCGGGAGGATTGAGGGAGCAGCTGCGG
AGGGAGAGGGAAGGGACAGATGCGCTGCAGAGGAGGCTGGATACTGCCAG
GACCAAGCTGGCCGGGTACGAGCGCGAGCGGAAGGAGTGGCGGGTGTGGA
AGGCCCGGCTTGAAGAGATGCGACGGTCGTGGGGAAATCAGCTCAAGAAG
GTGGCGAAAAAGATGCGAGCGAAGTCAGAAGAAAACGCAGCCTTGAAGGT
AAGGGTGGCCGAAACGGAAAGGGCAAGAGACCGCGCCGACGCCGAGGCTT
TCCGACTGCGCGACAATCTCGACCGGCTGACCGAACAGCGAGACAACCTT
CTACTGGGCGCAACACGCGCCGGACACGCCTCTTCTCCTGCCGATGCCTT
GGCGGAACTACTCGCAGCCGCCGCCGCGGGTGTAGCCACTGGAGCAGGGA
CCGGCACACGAGCCAGCACCGCAAACACCAACCTCGGCCGGGATAGAGGA
ATCGACGGTATAAACCGAGGATTAAGACTAGGCGGGGCTTGGGGTGAGCT
GTTCCCAGGAGAGGGTGGCCATGGTGGTGGTAACGATGGTAACGGTGGCG
GCGCCAGGCGCCAGGGGGACCGGGAGGGTGGGGGCGGCGAGAGCGGGAGC
GCAGGTGGGGCGCTCGAGGTGTCGGCAGAGGAATTGGAGCGAGCACGGGC
AGAGGCTAAGTTAGCAAAGGTTGCTGTGCAGCAGGAGAGGTTGAAGAGAG
ATGGGGCGATGAGGGAGAAGGATGAGGCTGTTCGACAATTACATCGGTTG
ATGGGAGCGGCGCGGCGGGCGGTGGGCAAGAGAGATAACAAGTTGAGGTC
CAGTCGGCTAGAGACCGAGGTCGTCTGGAACGCGCTGACAGAGGCGGTGC
GAGAAGAATGAGTGGCGAAAAAGATGCGAGCGAAGTCAGAAGAAAACGCA
GCCTTGAAGGTAAGGGTGGCCGAAACGGAAAGGGCAAGAGACCGCGCCGA
CGCCGAGGCTTTCCGACTGCGCGACAATCTCGACCGGCTGACCGAACAGC
GAGACAACCTTCTACTGGGCGCAACACGCGCCGGACACGCCTCTTCTCCT
GCCGATGCCTTGGCGGAACTACTCGCAGCCGCCGCCGCGGGTGTAGCCAC
TGGAGCAGGGACCGGCACACGAGCCAGCACCGCAAACACCAACCTCGGCC
GGGATAGAGGAATCGACGGTATAAACCGAGGATTAAGACTAGGCGGGGCT
TGGGGTGAGCTGTTCCCAGGAGAGGGTGGCCATGGTGGTGGTAACGATGG
TAACGGTGGCGGCGCCAGGCGCCAGGGGGACCGGGAGGGTGGGGGCGGCG
AGAGCGGGAGCGCAGGTGGGGCGCTCGAGGTGTCGGCAGAGGAATTGGAG
CGAGCACGGGCAGAGGCTAAGTTAGCAAAGGTTGCTGTGCAGCAGGAGAG
GTTGAAGAGAGATGGGGCGATGAGGGAGAAGGATGAGGCTGTTCGACAAT
TACATCGGTTGATGGGAGCGGCGCGGCGGGCGGTGGGCAAGAGAGATAAC
AAGTTGAGGTCCAGTCGGCTAGAGACCGAGGTCGTCTGGAACGCGCTGAC
AGAGGCGGTGCGAGAAGAATGA back to top
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