mRNA_H-paniculata_contig21930.5794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: A0A6H5KNC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.540e-11 Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 2326 KLYRCCTLPKLSCVQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGWT 2541
+++ TL K+ V G++ V NGF+ +Y NGYRDVK+FV + EHICEIQLH+R F+ LKD QH++Y W+
Sbjct: 302 QVFEALTL-KVGQVPGGNVLRVSNGFIRNYGRNGYRDVKMFVIIAEHICEIQLHLRPFHCLKDGQHEIYEWS 372
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: A0A6H5JBC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC9_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.170e-10 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 2377 DIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGWTSPVHAQYTLTSA 2577
DIR V+NGF+ + +GYRDVKV + +H+CEIQLH++ FY LK QH VY W + +T++
Sbjct: 6 DIRRVKNGFISDWMPSGYRDVKVNPVVNDHLCEIQLHLQRFYNLKSGQHAVYEWARELKVTKEMTAS 72
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: D8LH34_ECTSI (Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH34_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 1.390e-10 Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1351 NITALLQTERVLDESPPGDERDAKVNLLKFCQVDVVPNCRRIADSLYLYLQRNGLSHLRRIHEVKGDL----MQPIETGSIKDYLLHAERAKLRLDKLMKEVAPAGA---EVVTTGVKTVDSTTR 1704
NI LLQ E L+ P ER AKVNLLKF QV+ V R++ +LY L+R+ H + K L QP+E GSI+DYL+ AE AK LD+L+ +A G E + +K+ +S +R
Sbjct: 7 NIRELLQLEEELNTLPCSIERSAKVNLLKFLQVNAVVEYERVSTALYFDLRRDAGFHELSLVPEKNHLGHTCSQPMEAGSIEDYLVQAEEAKACLDRLIYSIATPGDPRWEGIPAPIKSKESASR 131
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 8.190e-9 Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 2374 GDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
GD+ V NGF + +GYRDVKV + EHICEIQLH+R F+TLK DQH VY W
Sbjct: 1610 GDVLRVANGFNSDWMPSGYRDVKVNPVVNEHICEIQLHLREFFTLKSDQHAVYEW 1664
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.210e-8 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 2374 GDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
GD+ V NGF + +GYRDVKV ++EH+CEIQLH+R F+TLK QH VY W
Sbjct: 183 GDVLRVANGFNSDWMPSGYRDVKVNPVVDEHLCEIQLHLREFFTLKGGQHAVYEW 237
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: D7FGT0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 4.340e-8 Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 2374 GDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
GD+ V NGF + +GYRDVKV + EH+CEIQLH+ F+TLK DQH VY W
Sbjct: 183 GDVLRVANGFNSDWMPSGYRDVKVNPVVNEHLCEIQLHLHDFFTLKSDQHAVYEW 237
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 8.060e-8 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 2374 GDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
GD+ V NGF + +GYRDVKV +++H+CEIQLH+R F+TLK QH VY W
Sbjct: 183 GDVLRVANGFNSDWMPSGYRDVKVNPVVDDHLCEIQLHLREFFTLKSSQHAVYEW 237
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: D8LGD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD7_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 3.620e-7 Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 2377 DIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
DI V+NGF + +GYRDVK+ + +H+CEIQLH+R F+ LK QH VY W
Sbjct: 46 DILRVKNGFNSDWMPSGYRDVKLNPVVNDHVCEIQLHLREFFALKGGQHVVYEW 99
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 3.950e-7 Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 2377 DIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
D+R V NGF + + +GYRDVKV + EH+CEIQLH+ F LK DQH VY W
Sbjct: 183 DVRRVTNGFKNDWMPSGYRDVKVNPVVNEHLCEIQLHLGDFSVLKSDQHAVYEW 236
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 6.840e-7 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 2356 LSCVQVGDIRAVRNGFVDSYRWNGYRDVKVFVNLEEHICEIQLHVRSFYTLKDDQHKVYGW 2538
+ +Q D+ V+NGF + GYRDVKV + EH+CEIQL +R+F+TLK QH VY W
Sbjct: 146 MGLLQPQDVLRVKNGFDSDWTPGGYRDVKVNPVVNEHLCEIQLQLRNFFTLKSGQHAVYTW 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21930.5794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21930.5794.1 >prot_H-paniculata_contig21930.5794.1 ID=prot_H-paniculata_contig21930.5794.1|Name=mRNA_H-paniculata_contig21930.5794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp MNDEMFNITALLQTERVLDESPPGDERDAKVNLLKFCQVDVVPNCRRIADback to top mRNA from alignment at H-paniculata_contig21930:52..3545+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21930.5794.1 ID=mRNA_H-paniculata_contig21930.5794.1|Name=mRNA_H-paniculata_contig21930.5794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3494bp|location=Sequence derived from alignment at H-paniculata_contig21930:52..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21930:52..3545+ >mRNA_H-paniculata_contig21930.5794.1 ID=mRNA_H-paniculata_contig21930.5794.1|Name=mRNA_H-paniculata_contig21930.5794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig21930:52..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |