mRNA_H-paniculata_contig219.5783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig219.5783.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI) HSP 1 Score: 362 bits (930), Expect = 4.580e-102 Identity = 568/1191 (47.69%), Postives = 608/1191 (51.05%), Query Frame = 3
Query: 294 RHSNGGGHGGKASSDVAKYRGACPTSRSDAELLELVKQMGGDEAKIQSALDDWWQNDQGEWATATAKKKKQSTYRGSGYGNGSA--YPNGGGANDRRGGRGGM-DKMRGVRIDDRGGGDRGSYHNDGYRGGGRGRGR----SAPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPQ------------------AANSAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVHTSVGXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPXXXXXXXAPAPVAPPDQPPAQPXAPAEAVVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPAATAPS-----PLAASSPAA---------------LQXXXSPVARXXXXXXXXTQTTPDRAAAVAVAAXXVTAVARAPAVGAPGAQLHMQSAQQQKEVSKTEESEVLSRSAPGEGLKMGKWALNDAIANSEDFLSFGRLSXXXXXXXXXXXXSTSGQTEAPPSVGNSAGNGWGAAAAASTSMGWGTKDTATSPAESQGAAKPPGFSSAVTASPSSASLPVGAGPPPGLPPLGNVKQASAFALLPHEQVHELEAEMDGLNKAHAQYAP--KAQSKLPTAQQXXXXXXPXXXXXXXXXXXXXXXXRQPRTTSREVQQXXXXXXXXXXXXVPVPTQQXXXXXXXXXXXPLQPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSTPVXXXXXXXXXXXXXXXXXXXQXSSSASATASAVDTSGSSSHIQMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGYN-KPQYGSSTSLPQQVSNELAGNFYSSNTSSLSSAAKPAPGGVYSAPTAPTVHGGGAHXXXXXXXXXXXXXXXXXXXXXXKPLYGAQQASXXXXXXXXXXXXXXXMQQAASQXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYNPSGQGYGSIYYGQQGPVQTNPYQYGYP-HQYPPSASQYQ-GGGGQRFPNMQRGYPGTDYGSQG-MGMGYGQMDYSTTSQYGVPPNGNAYMSEVGKEHYADFGQDQFGMSQQMGGQG 3713
RH+NGGG G ++DVAKYR ACP SRSD+E++ELVK+MGGD+AKIQSAL+DWWQNDQGEWATAT Y NG G +DRRGGRGGM DKMRG+R+D GDRG GYRGG SAPP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A++ A XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + XXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKP P PV V XXXXXXXXXXXXXXX P + PS AA+SPA XXX XXXXXXXX VA A VTA PA APG+QLH+Q AQ Q+ + ++ + SAPGEGLKMGKW L+D IAN E FLSFG+LS S T SVG SAGNGWGA + ++MGWGTKDTATSP E+ G KPPGFSS VTASPS +PVGAGPPPGLPPLGNVKQ VHELEAEMD LNK H+Q++ KAQSKLP AQQ P QXXXXXXXXXX P + GRGGYN KPQY +S SLPQQ XXXXX XXXXXXXXX XXXXXXXXXXXXQGYAPTPPGMPAQVGYQY PSGQ YGSIYYGQQGPVQ+NPYQYGYP HQYPPSASQYQ GGGGQRFPNM RGYP T+YGSQG MGMGYGQMDYS +SQYGVPPNGN YMS+VGKE Y DFGQDQFGM QQM GQG
Sbjct: 6 RHANGGGKG---NADVAKYRDACPASRSDSEIVELVKKMGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANGRGMDDRRGGRGGMADKMRGLRLD----GDRG-----GYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASAKAPAAGSAWTGDGPAAVSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPK-------PVPVX-------------XXVAXXXXXXXXXXXXXXXXXXAAHPTLPVVASPGGEAVAATPPQTPRPQGSMPSVAETAAAAAASPAIGSXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPSPVTAAVVTPAT-APGSQLHLQKAQAQEASAVSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTST----SVGTSAGNGWGATSG--SAMGWGTKDTATSPVETPGT-KPPGFSSTVTASPS---VPVGAGPPPGLPPLGNVKQ-----------VHELEAEMDSLNKPHSQFSQVSKAQSKLPAAQQ--------------------------------------------------PQVQXXXXXXXXXXRPAR--------------------------------------------------------------------------------------------------------------------------QQGGRGGYNSKPQYSNSGSLPQQX-------------------------------------------------------------------XXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYTPSGQAYGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQG 903 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig219.5783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig219.5783.1 >prot_H-paniculata_contig219.5783.1 ID=prot_H-paniculata_contig219.5783.1|Name=mRNA_H-paniculata_contig219.5783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1326bp MSTASRSRHSNGGGHGGKASSDVAKYRGACPTSRSDAELLELVKQMGGDEback to top mRNA from alignment at H-paniculata_contig219:2146..28541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig219.5783.1 ID=mRNA_H-paniculata_contig219.5783.1|Name=mRNA_H-paniculata_contig219.5783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=26396bp|location=Sequence derived from alignment at H-paniculata_contig219:2146..28541- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig219:2146..28541- >mRNA_H-paniculata_contig219.5783.1 ID=mRNA_H-paniculata_contig219.5783.1|Name=mRNA_H-paniculata_contig219.5783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7956bp|location=Sequence derived from alignment at H-paniculata_contig219:2146..28541- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |