mRNA_H-paniculata_contig21888.5779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21888.5779.1
Unique NamemRNA_H-paniculata_contig21888.5779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21888.5779.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.820e-7
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = -2 
Query:   65 DAAPLTVGTVLDSGAGITTISESLVPQLEAQFPGQRIVFPFRGAKTSVG---VANGQSEHIAYQTRRLQVAVQMPWGAVVLF-LSFAIMPGGDNSLIIGTKTLRDKLDFDIMRTM---AENRARI 418
            D   +    +LD G+G+TT+S  +  +L+A FP  ++V    G   + G   VA+G+   +  +T  +Q+A+   WG V +  LSFA+MPG D  +I+G  TL+  L  D+  ++   A +RA +
Sbjct:  530 DMTAIDAVAILDPGSGLTTMSAGIASRLQAAFPDVQVV----GGMQNPGKLKVADGRVLAVTQKTCPVQIALHTSWGLVSVDPLSFAVMPGNDEVVILGNPTLK-ALGIDVYESLGACARSRASV 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21888.5779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE9.820e-732.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21888contigH-paniculata_contig21888:2235..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size899
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.0286608-UTR-H-paniculata_contig21888:2234..25931622929597.0286608-UTR-H-paniculata_contig21888:2234..2593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21888 2235..2593 +
1691480929.3272834-UTR-H-paniculata_contig21888:2234..25931691480929.3272834-UTR-H-paniculata_contig21888:2234..2593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21888 2235..2593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929597.0430162-CDS-H-paniculata_contig21888:2593..31331622929597.0430162-CDS-H-paniculata_contig21888:2593..3133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21888 2594..3133 +
1691480929.34753-CDS-H-paniculata_contig21888:2593..31331691480929.34753-CDS-H-paniculata_contig21888:2593..3133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21888 2594..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21888.5779.1prot_H-paniculata_contig21888.5779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21888 2594..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21888.5779.1

>prot_H-paniculata_contig21888.5779.1 ID=prot_H-paniculata_contig21888.5779.1|Name=mRNA_H-paniculata_contig21888.5779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MVVMPAPESSTVPTVSGAASSPPPGSKTSAVVWNLSASTSTVPTTSSSST
VPTSASATSPASFPSVPVHTRLLWACGPAPGATSPEPLADIAPSALSLIS
TIFSTYSVSSAGTCMYFPFVLLFVCGVAPLSTATARLAVPCCPACDRVPV
YGPCHLAVAGAGVRGPTVTVGLEPCCPAPE
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mRNA from alignment at H-paniculata_contig21888:2235..3133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21888.5779.1 ID=mRNA_H-paniculata_contig21888.5779.1|Name=mRNA_H-paniculata_contig21888.5779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=899bp|location=Sequence derived from alignment at H-paniculata_contig21888:2235..3133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGCGCGACTCCCCGCTGGGAGCTCCCGGCCCCCGCACGGACGAATTT
CCCAAGCCGCTCTCGATACGCGCCCGGTTCTCCGCCATCGTGCGCATAAT
GTCGAAGTCCAGCTTGTCGCGGAGGGTCTTCGTACCGATGATCAAGCTGT
TGTCTCCGCCCGGCATGATGGCGAAGGAAAGGAACAATACAACCGCCCCC
CACGGCATCTGCACCGCAACCTGCAGTCGCCGCGTCTGGTACGCGATGTG
CTCGGACTGTCCATTCGCCACCCCGACCGAGGTCTTCGCGCCCCTGAAAG
GGAACACAATCCGTTGTCCGGGAAACTGAGCTTCCAGTTGCGGGACCAGG
CTCTCCGAGATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTAC
GGTCAGCGGTGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGG
TGGTGTGGAACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCG
TCGTCGACCGTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCCC
GTCAGTGCCTGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAG
GCGCCACCTCGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGC
TTGATTTCCACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATG
CATGTATTTCCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCT
CAACAGCAACGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGG
GTCCCGGTGTACGGGCCCTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCG
TGGCCCGACCGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21888:2235..3133+

>mRNA_H-paniculata_contig21888.5779.1 ID=mRNA_H-paniculata_contig21888.5779.1|Name=mRNA_H-paniculata_contig21888.5779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig21888:2235..3133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGG
TGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGA
ACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACC
GTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCCCGTCAGTGCC
TGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCACCT
CGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCC
ACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTT
CCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAA
CGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTG
TACGGGCCCTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGAC
CGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAAATGGTTGTGA
TGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGGTGCAGCATCG
TCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGAACTTGAGCGC
CTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACCGTCCCAACCT
CAGCATCCGCCACTTCACCCGCATCCTTCCCGTCAGTGCCTGTCCACACT
CGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCACCTCGCCTGAGCC
GCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCCACCATCTTCT
CCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTTCCCCTTCGTC
TTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAACGGCGCGACT
CGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTGTACGGGCCCT
GCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGACCGTCACAGTC
GGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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