mRNA_H-paniculata_contig2187.5775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2187.5775.1
Unique NamemRNA_H-paniculata_contig2187.5775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 774 bits (1999), Expect = 2.440e-273
Identity = 384/570 (67.37%), Postives = 452/570 (79.30%), Query Frame = 2
Query:  353 FIDDSVDQLKPRTGEVLCNVQSKLILMLLFALHKDGVSENQSV---ASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEVDDELGEQLEQDDDEWNVGDGNDEIGP 2032
            ++D SV ++KP+ GEV  ++QS+++LMLLF L K+G SEN++V   A TFKIGH KVR +N HWW+H    ETT  G GK+ K DDGRRRLT+ Q DQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+VGGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAEDAGLAV+VYMD+SFVHQAHGS YSYFP+DENGVV+DG+GRTTGKGLRMIM HAI  W PL      + FPIEEGWFK   +G +K       M DE+TAEFLWQAKLA+GDYHA MTD+MFMEWLEHRL+PA+NA P+F GKKMILVLDNASYHHGFD+EVK PETN K +N       GA ++ VKR       VEH FEVP+EPGSSFP   R GGVSR EVA ATRE+ RL+YPE LEERV TFM++KGW LIW PPYMPSFQPIELFWQ+GKQYVS NF+LKRKM EVW QI +G YGD  W GQEGGW AA+CSKL+ HAIGEMNKW++D D  L G IGNL+ P+GYD+DDVS V +V++ +GEQ++Q+  EW  GDG+DE+ P
Sbjct:  117 YMDTSVHEVKPKKGEVWTHLQSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNME-QPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--FCDGFPIEEGWFKETGSGKKK-------MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGYDKDDVSPVGDVEEGVGEQIQQESAEW--GDGSDEVEP 674          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 743 bits (1918), Expect = 1.410e-261
Identity = 371/550 (67.45%), Postives = 432/550 (78.55%), Query Frame = 2
Query:  413 QSKLILMLLFALHKDGVSENQSV---ASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEVDDELGEQLEQDDDEWNVGDGNDEIGP 2032
            +S+++LMLLF L K G SE ++V   A TFKIGH KVR +N HWW+H    E T  G GK  K DDGRRRLT+ QEDQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEM +AKRAEDAGLAV+VYMD+SFVHQAHGS YSYFP+DE+GVV+DG+GRTTGKGLRMIM HAI  W PL      +  PIEEGWFK   +G ++       M DE+TAEFLWQAKLA+GDYHA MTD+MFMEWLEHRL+PA+NA P+F+GK+MILVLDNASYHHGFD+EVK PETN K +N       GA ++ V+R      VVE+ FEVPTEPGSSFP   R GGVSR EVA ATRE+  L++PE LEERV TFMR+KGW LIW PPYMPSFQPIELFWQ+GKQYVS NF+LKRKM EVW QI KG YGD  WPGQEGGW AADCSKL+ HAIGEMNKW+KD D  L GTIG+LE P+GYD DDV  V +V++ +GEQ++Q+  EW  GDG+DE+ P
Sbjct:  103 ESRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFKETGSGKKE-------MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVPPVGDVEEGVGEQIQQESAEW--GDGSDEVEP 640          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 724 bits (1869), Expect = 5.390e-254
Identity = 362/528 (68.56%), Postives = 417/528 (78.98%), Query Frame = 2
Query:  470 NQSVASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEVDDELGEQLEQDDDEWNVGDGNDEIGP 2032
            N  VA TFKIGH KVR +N HWW+H    ETT  G GK  K DDGRRRLT+ QEDQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLV M++AKRAEDAGLAV+VYMD+SFVHQAHGS YSYFP+DE+GVV+DG+GRTTGKGLRMIM HAI  W PL      +  PIEEGWFK   +G ++       M DE+TAEFLWQAKLA+GDYHA MTD+MFMEWLEHRL+PA+NA P+F+GK+MILVLDNASYHHGF SEVK PETN K +N       GA ++ V+R      VVE+ FEVPTEPGSSFP   R GGVSR EVA ATRE+  L++PE LEERV TFMR+KGW LIW PPYMPSFQPIELFWQ+GKQYVS NF+LKRKM EVW QI KG YGD  WPGQEGGW AADCSKL+ HAIGEMNKW+KD D  L GTIG+LE P+GYD DDVS V +V++ +GEQ++Q+  EW  GDG+DE+ P
Sbjct:  136 NVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLV-MNMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFKETGSGKKE-------MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW--GDGSDEVEP 650          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 679 bits (1751), Expect = 9.810e-239
Identity = 332/476 (69.75%), Postives = 378/476 (79.41%), Query Frame = 2
Query:  470 NQSVASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDE 1876
            N  VA TFKIGH KVR +N HWW+H    ETT  G GK  K DDGRRRLT+ QEDQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAEDAGLAV+VYMD+SFVHQAHGS YSYFP+DE+GVV+DG+GRTTGKGLRMIM HAI  W PL      +  PIEEGWFK   +G ++       M DE+TAEFLWQAKLA+GDYHA MTD+MFMEWLEHRL+PA+NA P+F+GK+MILVLDNASYHHGFD+EVK PE+N K +N       GA ++ V+R      VVE+  EVPTEPGSSFP   R GGVSR EVA ATRE+  L++PE LEERV TFMR+KGW LIW PPYMPSFQPIELFWQ+GKQYVS  F+LKRKM EVW QI KG YGD  WPGQEGGW AA+CSKL+ HAIGEMNKW+KD DE
Sbjct:    8 NVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFKETGSGKKE-------MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDE 473          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 631 bits (1627), Expect = 3.920e-220
Identity = 318/468 (67.95%), Postives = 363/468 (77.56%), Query Frame = 2
Query:  422 LILMLLFALHKDGVSENQSV---ASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEG 1795
            ++LMLLF L K+G +EN++V   A TFKIGH KVR +N HWW+H    ETT  G GK  K DDGRRRLT+ QEDQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+  GLL RLGY+ RRGRIKTPPL+A+RLARIR FLVEMD+AKRAEDAGLAV+VY+D SFVHQAHGS YSYFP DE+ VV+DG+GRTTGKGLR+IM HAI  W PL         PIEEGWFK   +G R+       M DE+TAEFLWQAKLA+GDYHA MTD+MFMEWLEHRL+PA+NA P+F+GK+MILVLDNASYHHGFD+EVK PETN K +N       GA ++ VKR      VVE  FEVPTEPGSSFP   R GGVSR EVA ATRE+  L++PE LEERV TFMR+KG  LIW PPYMPSFQPIELFWQ+GKQYVS NF+LKRK+ EVW QI KG YGD  WPGQEG
Sbjct:    1 MVLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAEGLLSRLGYKGRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYIDGSFVHQAHGSPYSYFPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLCVG--LPIEEGWFKETGSGKRE-------MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKEWPGQEG 458          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 614 bits (1584), Expect = 5.560e-211
Identity = 332/597 (55.61%), Postives = 417/597 (69.85%), Query Frame = 2
Query:  284 EQELVEAASHAAQQQKLSQAAHTFIDDSVDQLKPRTGEVLCNVQSKLILMLLFALHKDGVSEN---QSVASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRK--QGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQY--VSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEV--DDELGEQLEQDDDEWNVGDGNDEI 2026
            EQ+ V  A+ AA   KL   A  F++DSV  L+P+TGE+    QS++ILML F L K G SEN   + VA T +IG  KV  V   W++     ET G+G GK T  DDGRR +T++QED L + I  EH+AGRQVFRRTV +++   C+   E+SNRAVGGLLQRLG++RRRGRIK PPL+ +R  RIRLFLV+MD+AKRAEDAG+AV+VYMD+SFVHQAHGSAYSYFP+D+ G+V+DG+GRTTGKGLRMIM HAI +  PL        FPI EGWFK KEN  +K   G  DF M+DE+TAEFLWQAKLA GDYH  MTD MFM+WL+HRLTPAF+A  +F+ KKM LVLDNASYHH FD EVK PETN+K YN       G  +  V R +  G   E+ FEVP +   S P+A R  GVS+EE+A  TR +F+ ++P+ LEE+ +T+MR+KGW LIW PPYMP+FQPIELFWQ+GK Y  VS +F+  R + +VW++I  G YGDP W GQE GW AA+C KL+ HAIG+M++WI  +   L GTIG+LE P       V+   E   +DE+ + +E+  DEW   D  D I
Sbjct:   61 EQDRVSKAAEAATS-KLPPLALKFVEDSVQSLRPKTGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYL--ECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVHQAHGSAYSYFPSDDKGIVQDGIGRTTGKGLRMIMVHAITEHGPLAE--LQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDA--QFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRES-EGKAAEYNFEVPAQ--GSLPNANR-NGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYHYVSIHFEKGRNVLDVWKKIRLGWYGDPEWDGQERGWKAANCGKLVQHAIGKMDEWIGLYGGNLSGTIGSLEYP-------VAEYQEATAEDEIEDGVEEQTDEWLGEDAEDAI 639          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 593 bits (1528), Expect = 4.840e-204
Identity = 312/542 (57.56%), Postives = 363/542 (66.97%), Query Frame = 2
Query:  470 NQSVASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTN--------------NDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEVDDELGEQLEQDDDEWNVGDGNDEIGP 2032
            N  VA TFKIGH KVR +N HWW+H    ETT  G GK  K DDGRRRLT+ QEDQL + INDEHKAGRQVFRRTVAEW+   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEM +AK AEDAGL V   +                                                                      +  PIEEGWFK   +G ++       M DE+TAEFL   K A+GD+HA MTD+MFMEWLEHRL+PA+NA P+F+GK+MILVLDNASYHHGFD+EVK PETN K +N       GA ++ V+R      VVE+  EVPTEPGSSFP   R GGVSR EVA ATRE+  L++PE LEERV TFMR+KGW LIW PPYMPSFQPIELFWQ+GKQYVS NF+LKRKM EVW QI KG YGD  WPGQEGGW AADCSKL+ HAIGEMNKW+KD D  L GTIG+LE P+GYD DDVS V +V++ +GEQ++Q+  EW  GDG+DE+ P
Sbjct:    8 NVQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKGAEDAGLMVPPILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDGLPIEEGWFKETGSGKKE-------MEDEETAEFLCHFKFAKGDHHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAEW--GDGSDEVEP 539          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 582 bits (1501), Expect = 2.920e-200
Identity = 302/527 (57.31%), Postives = 376/527 (71.35%), Query Frame = 2
Query:  479 VASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRK--QGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQDDVSRVNEV--DDELGEQLEQDDDEWNVGDGNDEI 2026
            VA+T +IG   V  V   W++     ET G+G GK T  DDGRR +T++QED L + I  EH+AGRQVFRRTV +++   C+   E+SNRAVGGLLQRLG++RRRGRIK PPL+ +R  RIRLFLV+MD+AKRAEDAG+AV+VY+D+SFVHQAHGSAYSYFP+D+ GVV+DG+GRTTGKGLRMIM HAI    PL        FPI EGWFK KEN  +K   G  DF M+DE+TAEFLWQAKLA GDYH  MTD MFM+WL+HRLTPAF+A  +F+ KKM LVLDNASYHH FD EVK PETN+K YN       G  +  V R +  G   E+ FEVP +   S P+A R  GVS+EE+A  TR +F+ ++P+ LEE+ +T+MR+KGW LIW PPYMP+FQPIELFWQ+GK YVS +F+  R + +VW+QI  G YGDP W GQEGGW AA+C KL+ HAIG+M++WI  +   L GTIG+LE P       V+   E   +DE+ + +E+  DEW   D  D I
Sbjct:    7 VATTLRIGTDNVLAVRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYL--ECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYIDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAE--LQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDA--QFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRES-EGKAAEYNFEVPAQ--GSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMDEWIGLYGGNLSGTIGSLEYP-------VAEYQEATAEDEIEDGVEEQTDEWLGEDAEDAI 517          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 572 bits (1475), Expect = 2.410e-194
Identity = 318/560 (56.79%), Postives = 380/560 (67.86%), Query Frame = 2
Query:  299 EAASHAAQQQKLSQAAHTFIDDSVDQLKPRTGEVLCNVQSKLILMLLFALHKDGVSENQSV---ASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYNGA-------GAVTVKRAAANGTVV---EHRFEVPTEPGSSFPDAR-RAG-GVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLE-VPEGYDQD 1930
            EA + A QQ+   Q A    DD    L PRTG +L   QS+ IL+  F L + GV  N++V   AST ++G  KV  V  HWW     L ++ EG G V+   DGR+ L   Q   L   I+D+H+ G+QVFRRTV EWI E CN  K++SNRAVGGLL R+GYRRRRGRIK PPL+  R ARIR FLVEM  A   E+   AV+VYMD+SF HQ HGSAYSYF TD++GVV+DGMGRT+GKGLRMIM HAI     L A   NN FPI EGWFKPK+ G  +QG    +M  E+TAE LWQAK A GDYH  MTD MFMEWLE RL PAF A  K+  KKMILVLDNASYHHG+D+EV  PE+N+K YN A         +TV+R   +   V   ++ F+VP     +FP A  + G GVS  EVALATR FF+L +P  L E+V+TFM  +GW+LIW PPYMPSFQPIELFWQ+GKQYVSFNF+ KR M EVW Q+ KG YGDPTW GQ+GGW  ADCSKL+AHA+ EMNKW+   D  LRG +G LE +PE Y+ D
Sbjct:   69 EADTGAPQQEAREQQAAQQRDD----LAPRTGSLLDTSQSRSILLTYFELVQSGVEPNKAVQRTASTLRVGKDKVFKVRAHWWEKTELLTSSAEGRG-VSSGKDGRKLLDDVQCANLRAFISDKHENGQQVFRRTVREWIKETCN--KDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENN-FPIPEGWFKPKDKGKGRQGA--GSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKA--KYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYTFQVPAT--GTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKWVAS-DPVLRGQMGALEEIPESYEDD 613          
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 554 bits (1428), Expect = 2.180e-189
Identity = 280/460 (60.87%), Postives = 340/460 (73.91%), Query Frame = 2
Query:  500 GHSKVRDVNKHWWNHNTPLETTGEGSGKVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMIMAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRK--QGGKDFNMTDEKTAEFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLDNASYHHGFDSEVKAPETNNKVYN-------GAGAVTVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELIWAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTWPGQEGGWNAADCSKLMAHAIGEMN 1852
            G  KV  V   W++     ET G+G GK T  DDGRR +TQ+QED L + I  EH+AGRQVFRRTV +++   C+   E+SNRAVGGLLQRLG++RRRGRIK PPL+ +R  RIRLFLV+MD+AK AEDAG+AV+VYMD+SFVHQAHGSAYSYFP+D+ GVV+DG+GRTTGKGLRMIM HAI    PL        FPI EGWFK KEN  +K   G  DF M+DE+TAEFLWQAKLA GDYH  MTD MFM+WL+HRLTPAF+A  +F+ KKM LVLDNASYHH FD EVK PETN+K YN       G  +  V R +  G   E+ FEVP +   S P+A R  GVS+EE+A  TR +F+ ++P+ LEE+ +T+MR+KGW LIW PPYMP+FQPIELFWQ+GK YVS +F+  R M +VW+QI  G YGDP W GQEGGW AA+C KL+ HAIG+M+
Sbjct:   58 GTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITQEQEDGLREFIKGEHEAGRQVFRRTVKDYL--ECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKGAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAE--LQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDA--QFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRES-EGKAAEYNFEVPAQ--GSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMD 508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2187.5775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM6_ECTSI2.440e-27367.37DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE1.410e-26167.45DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE5.390e-25468.56DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE9.810e-23969.75DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE3.920e-22067.95DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX2_9PHAE5.560e-21155.61Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K024_9PHAE4.840e-20457.56DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KCN2_9PHAE2.920e-20057.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ25_ECTSI2.410e-19456.79Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KP14_9PHAE2.180e-18960.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2187contigH-paniculata_contig2187:2315..4929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2035
Cds size1605
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2187.5775.1prot_H-paniculata_contig2187.5775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2187 2745..4929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.529318-UTR-H-paniculata_contig2187:2314..27441622929596.529318-UTR-H-paniculata_contig2187:2314..2744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2187 2315..2744 +
1691480929.0138626-UTR-H-paniculata_contig2187:2314..27441691480929.0138626-UTR-H-paniculata_contig2187:2314..2744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2187 2315..2744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.5459647-CDS-H-paniculata_contig2187:2744..27921622929596.5459647-CDS-H-paniculata_contig2187:2744..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 2745..2792 +
1691480929.0219646-CDS-H-paniculata_contig2187:2744..27921691480929.0219646-CDS-H-paniculata_contig2187:2744..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 2745..2792 +
1622929596.5602512-CDS-H-paniculata_contig2187:3351..42721622929596.5602512-CDS-H-paniculata_contig2187:3351..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 3352..4272 +
1691480929.0298836-CDS-H-paniculata_contig2187:3351..42721691480929.0298836-CDS-H-paniculata_contig2187:3351..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 3352..4272 +
1622929596.5725455-CDS-H-paniculata_contig2187:4293..49291622929596.5725455-CDS-H-paniculata_contig2187:4293..4929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 4294..4929 +
1691480929.0384467-CDS-H-paniculata_contig2187:4293..49291691480929.0384467-CDS-H-paniculata_contig2187:4293..4929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2187 4294..4929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2187.5775.1

>prot_H-paniculata_contig2187.5775.1 ID=prot_H-paniculata_contig2187.5775.1|Name=mRNA_H-paniculata_contig2187.5775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=535bp
MLLFALHKDGVSENQSVASTFKIGHSKVRDVNKHWWNHNTPLETTGEGSG
KVTKNDDGRRRLTQDQEDQLHKLINDEHKAGRQVFRRTVAEWIMEHCNPD
KEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRA
EDAGLAVLVYMDKSFVHQAHGSAYSYFPTDENGVVEDGMGRTTGKGLRMI
MAHAIKDWDPLVARGTNNDFPIEEGWFKPKENGTRKQGGKDFNMTDEKTA
EFLWQAKLAEGDYHATMTDTMFMEWLEHRLTPAFNANPKFRGKKMILVLD
NASYHHGFDSEVKAPETNNKVYNGAGAVTVKRAAANGTVVEHRFEVPTEP
GSSFPDARRAGGVSREEVALATREFFRLHYPENLEERVDTFMRQKGWELI
WAPPYMPSFQPIELFWQNGKQYVSFNFQLKRKMHEVWEQILKGCYGDPTW
PGQEGGWNAADCSKLMAHAIGEMNKWIKDHDEQLRGTIGNLEVPEGYDQD
DVSRVNEVDDELGEQLEQDDDEWNVGDGNDEIGP*
back to top

mRNA from alignment at H-paniculata_contig2187:2315..4929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2187.5775.1 ID=mRNA_H-paniculata_contig2187.5775.1|Name=mRNA_H-paniculata_contig2187.5775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2615bp|location=Sequence derived from alignment at H-paniculata_contig2187:2315..4929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAGACGAAGGGCAGGCGCCAACCCACCGGTGGCGCCACTGGCCG CCCGAGCAACGTGGCGAAAAGGGCCAAAACTGTGCGGCGAGAGATGGTCA GGCTCTCGACATACTCAGGGCTCAGCTTGAGGAGCAGCAGGCGGCGATAG CGGCGCTCAAGGCGGAGGTCGAGTCGAGGGAGAAGCTGTCAAGGCGAAAG AGGCAGCGATTGCCGAGAAGGAGGCAAACAAAGAGCGCGTCGCTGCGAAG CAGCAAGCGAAACAGCAAGCCCACGAACAACGAGAGCAGGAGCTCGTCGA AGCGGCTTCTCACGCCGCACAGCAACAGAAGCTTTCACAGGCAGCCCACA CCTTCATCGACGACTCTGTGGACCAGCTGAAGCCTCGAACTGGCGAGGTC TTGTGCAATGTCCAGTCGAAGTTGATTCTCATGCTGTTGTTTGCTCTTCA CAAGGACGGCGTTTCTGAGAATCAATCGGTGCTTTAGGTCAGTACGAGTA GTCAGCAAGTTTATTTAATATTGAATTACACGTGTCTGTTTTGTATTGCT TAAAGTATGCTGTACAGCAGCAGTTTTTGTGGCATGTTAATTTGAATCAT ACGTCTTTTCGCGCCCTTTTCGGTGTCGCTGTTCATACACCTCTGAGTGT ACAAGGTACTGCTGTCTGTACGAACACGGTTGCACTGCTGTCTGCTGTAC TGTGCGCATCGCTGTTCGTACGGTTCGTAACCACTGCTGTCTGTACGGTG CACACTGCTGTCCGCACAGGGCACACAGCTGCCTGTACGGTTGTGCACTG CTGTGTGTACCGTACAACAGTGAGTTCGCTGTCTCCCAAACCCTCACCAA TGTACCCACGGCGATAACGCTGTTACGCATGGCGCCGCAGGTGCATTTTC TTCCAAGACTGTACGCTGTAAAACTTCTGCTCTCTGTTTGCACGGCTTGA GGTGCGCTGTCTTGGCAATTGCACTGACCCGACTCCCGTATGCCGATGCA ATATGCGCTGCGCTCTGGACAACTGAACGTCTGCCAGGTGGCGAGCACCT TCAAGATCGGCCATTCGAAAGTCAGAGACGTCAACAAGCACTGGTGGAAC CACAACACCCCGTTGGAAACCACCGGCGAAGGAAGCGGCAAGGTCACCAA GAACGACGACGGCCGACGGCGTCTCACCCAAGATCAGGAGGACCAGCTTC ACAAGCTTATCAACGACGAGCACAAAGCTGGGCGCCAAGTCTTTCGCCGT ACGGTGGCGGAGTGGATAATGGAGCACTGCAACCCAGACAAGGAGGTGTC AAACCGCGCGGTAGGAGGGTTGCTGCAGAGGCTCGGTTATAGGCGCCGTA GGGGCAGGATCAAAACACCCCCGTTGGATGCCAAGAGGCTCGCGCGTATT CGTCTGTTTCTCGTTGAAATGGACATTGCGAAAAGGGCAGAGGATGCGGG GCTGGCAGTTCTTGTGTACATGGATAAGAGTTTTGTCCACCAGGCGCACG GCTCCGCGTATTCATACTTTCCTACTGATGAGAATGGGGTTGTAGAGGAT GGGATGGGTCGCACGACGGGGAAGGGCTTACGCATGATTATGGCGCATGC AATCAAGGATTGGGACCCGTTGGTTGCGCGTGGTACCAATAATGACTTTC CAATTGAAGAGGGTTGGTTTAAGCCTAAGGAAAACGGTACGAGAAAGCAA GGGGGTAAGGACTTCAACATGACAGATGAGAAAACAGCAGAGTTTCTGTG GCAGGCCAAGTTGGCTGAGGGCGATTATCACGCGACTATGACCGATACGA TGTTCATGGAGTGGCTTGAACACCGCCTTACCCCAGCTTTCAACGCTAAC CCTAAGTTCAGGGGCAAGAAGATGATTCTTGTTCTTGACAACGCCTCGTA TCATCATGGTTTCGACTCGGAAGTCAAGGCGCCGGAAACCAATAACAAGG TGTATAATGTCTGACTGTTGCGTAAGTAGGGAGCGGGGGCAGTCACGGTG AAGCGTGCCGCTGCCAACGGCACAGTTGTGGAGCACCGCTTCGAGGTACC AACAGAACCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGGGCGGTGTCA GCAGAGAGGAGGTAGCGTTGGCCACTCGAGAGTTTTTCCGCCTTCACTAC CCTGAAAATCTTGAGGAGCGGGTGGATACGTTCATGCGGCAGAAGGGGTG GGAGTTGATTTGGGCACCGCCTTACATGCCGTCTTTTCAGCCGATAGAGT TGTTTTGGCAGAATGGTAAGCAGTACGTGAGCTTCAACTTTCAGCTGAAG CGAAAAATGCACGAGGTGTGGGAGCAGATTCTCAAAGGTTGCTACGGGGA CCCGACGTGGCCAGGGCAGGAGGGGGGGTGGAACGCAGCCGATTGTTCCA AGTTGATGGCGCACGCCATTGGCGAGATGAACAAATGGATCAAGGATCAT GATGAACAGCTGCGTGGTACGATAGGTAACCTTGAAGTTCCAGAAGGGTA TGATCAGGACGATGTATCACGTGTGAATGAGGTCGATGATGAGTTGGGGG AGCAGCTTGAACAGGATGACGATGAGTGGAATGTGGGGGACGGCAACGAT GAGATTGGGCCATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2187:2315..4929+

>mRNA_H-paniculata_contig2187.5775.1 ID=mRNA_H-paniculata_contig2187.5775.1|Name=mRNA_H-paniculata_contig2187.5775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3210bp|location=Sequence derived from alignment at H-paniculata_contig2187:2315..4929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTGTTTGCTCTTCACAAGGACGGCGTTTCTGAGAATCAATCGAT
GCTGTTGTTTGCTCTTCACAAGGACGGCGTTTCTGAGAATCAATCGGTGG
CGAGCACCTTCAAGATCGGCCATTCGAAAGTCAGAGACGTCAACAAGCAC
TGGTGGAACCACAACACCCCGTTGGAAACCACCGGCGAAGGAAGCGGCAA
GGTCACCAAGAACGACGACGGCCGACGGCGTCTCACCCAAGATCAGGAGG
ACCAGCTTCACAAGCTTATCAACGACGAGCACAAAGCTGGGCGCCAAGTC
TTTCGCCGTACGGTGGCGGAGTGGATAATGGAGCACTGCAACCCAGACAA
GGAGGTGTCAAACCGCGCGGTAGGAGGGTTGCTGCAGAGGCTCGGTTATA
GGCGCCGTAGGGGCAGGATCAAAACACCCCCGTTGGATGCCAAGAGGCTC
GCGCGTATTCGTCTGTTTCTCGTTGAAATGGACATTGCGAAAAGGGCAGA
GGATGCGGGGCTGGCAGTTCTTGTGTACATGGATAAGAGTTTTGTCCACC
AGGCGCACGGCTCCGCGTATTCATACTTTCCTACTGATGAGAATGGGGTT
GTAGAGGATGGGATGGGTCGCACGACGGGGAAGGGCTTACGCATGATTAT
GGCGCATGCAATCAAGGATTGGGACCCGTTGGTTGCGCGTGGTACCAATA
ATGACTTTCCAATTGAAGAGGGTTGGTTTAAGCCTAAGGAAAACGGTACG
AGAAAGCAAGGGGGTAAGGACTTCAACATGACAGATGAGAAAACAGCAGA
GTTTCTGTGGCAGGCCAAGTTGGCTGAGGGCGATTATCACGCGACTATGA
CCGATACGATGTTCATGGAGTGGCTTGAACACCGCCTTACCCCAGCTTTC
AACGCTAACCCTAAGTTCAGGGGCAAGAAGATGATTCTTGTTCTTGACAA
CGCCTCGTATCATCATGGTTTCGACTCGGAAGTCAAGGCGCCGGAAACCA
ATAACAAGGTGTATAATGTGGCGAGCACCTTCAAGATCGGCCATTCGAAA
GTCAGAGACGTCAACAAGCACTGGTGGAACCACAACACCCCGTTGGAAAC
CACCGGCGAAGGAAGCGGCAAGGTCACCAAGAACGACGACGGCCGACGGC
GTCTCACCCAAGATCAGGAGGACCAGCTTCACAAGCTTATCAACGACGAG
CACAAAGCTGGGCGCCAAGTCTTTCGCCGTACGGTGGCGGAGTGGATAAT
GGAGCACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGGAGGGT
TGCTGCAGAGGCTCGGTTATAGGCGCCGTAGGGGCAGGATCAAAACACCC
CCGTTGGATGCCAAGAGGCTCGCGCGTATTCGTCTGTTTCTCGTTGAAAT
GGACATTGCGAAAAGGGCAGAGGATGCGGGGCTGGCAGTTCTTGTGTACA
TGGATAAGAGTTTTGTCCACCAGGCGCACGGCTCCGCGTATTCATACTTT
CCTACTGATGAGAATGGGGTTGTAGAGGATGGGATGGGTCGCACGACGGG
GAAGGGCTTACGCATGATTATGGCGCATGCAATCAAGGATTGGGACCCGT
TGGTTGCGCGTGGTACCAATAATGACTTTCCAATTGAAGAGGGTTGGTTT
AAGCCTAAGGAAAACGGTACGAGAAAGCAAGGGGGTAAGGACTTCAACAT
GACAGATGAGAAAACAGCAGAGTTTCTGTGGCAGGCCAAGTTGGCTGAGG
GCGATTATCACGCGACTATGACCGATACGATGTTCATGGAGTGGCTTGAA
CACCGCCTTACCCCAGCTTTCAACGCTAACCCTAAGTTCAGGGGCAAGAA
GATGATTCTTGTTCTTGACAACGCCTCGTATCATCATGGTTTCGACTCGG
AAGTCAAGGCGCCGGAAACCAATAACAAGGTGTATAATGGAGCGGGGGCA
GTCACGGTGAAGCGTGCCGCTGCCAACGGCACAGTTGTGGAGCACCGCTT
CGAGGTACCAACAGAACCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGG
GCGGTGTCAGCAGAGAGGAGGTAGCGTTGGCCACTCGAGAGTTTTTCCGC
CTTCACTACCCTGAAAATCTTGAGGAGCGGGTGGATACGTTCATGCGGCA
GAAGGGGTGGGAGTTGATTTGGGCACCGCCTTACATGCCGTCTTTTCAGC
CGATAGAGTTGTTTTGGCAGAATGGTAAGCAGTACGTGAGCTTCAACTTT
CAGCTGAAGCGAAAAATGCACGAGGTGTGGGAGCAGATTCTCAAAGGTTG
CTACGGGGACCCGACGTGGCCAGGGCAGGAGGGGGGGTGGAACGCAGCCG
ATTGTTCCAAGTTGATGGCGCACGCCATTGGCGAGATGAACAAATGGATC
AAGGATCATGATGAACAGCTGCGTGGTACGATAGGTAACCTTGAAGTTCC
AGAAGGGTATGATCAGGACGATGTATCACGTGTGAATGAGGTCGATGATG
AGTTGGGGGAGCAGCTTGAACAGGATGACGATGAGTGGAATGTGGGGGAC
GGCAACGATGAGATTGGGCCATGAGGAGCGGGGGCAGTCACGGTGAAGCG
TGCCGCTGCCAACGGCACAGTTGTGGAGCACCGCTTCGAGGTACCAACAG
AACCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGGGCGGTGTCAGCAGA
GAGGAGGTAGCGTTGGCCACTCGAGAGTTTTTCCGCCTTCACTACCCTGA
AAATCTTGAGGAGCGGGTGGATACGTTCATGCGGCAGAAGGGGTGGGAGT
TGATTTGGGCACCGCCTTACATGCCGTCTTTTCAGCCGATAGAGTTGTTT
TGGCAGAATGGTAAGCAGTACGTGAGCTTCAACTTTCAGCTGAAGCGAAA
AATGCACGAGGTGTGGGAGCAGATTCTCAAAGGTTGCTACGGGGACCCGA
CGTGGCCAGGGCAGGAGGGGGGGTGGAACGCAGCCGATTGTTCCAAGTTG
ATGGCGCACGCCATTGGCGAGATGAACAAATGGATCAAGGATCATGATGA
ACAGCTGCGTGGTACGATAGGTAACCTTGAAGTTCCAGAAGGGTATGATC
AGGACGATGTATCACGTGTGAATGAGGTCGATGATGAGTTGGGGGAGCAG
CTTGAACAGGATGACGATGAGTGGAATGTGGGGGACGGCAACGATGAGAT
TGGGCCATGA
back to top