mRNA_H-paniculata_contig21836.5768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21836.5768.1
Unique NamemRNA_H-paniculata_contig21836.5768.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21836.5768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21836contigH-paniculata_contig21836:1149..1772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size626
Cds size624
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.4859967-CDS-H-paniculata_contig21836:1148..17721622929595.4859967-CDS-H-paniculata_contig21836:1148..1772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21836 1149..1772 +
1691480928.5292888-CDS-H-paniculata_contig21836:1148..17721691480928.5292888-CDS-H-paniculata_contig21836:1148..1772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21836 1149..1772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21836.5768.1prot_H-paniculata_contig21836.5768.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21836 1149..1772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21836.5768.1

>prot_H-paniculata_contig21836.5768.1 ID=prot_H-paniculata_contig21836.5768.1|Name=mRNA_H-paniculata_contig21836.5768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MKRGGQQSSDSGAGQQGSRPTVTVGPRTPAPATARWQGPYTGTRSQAGQH
GTASRAVAVESGATPQTNNKTKGKYMHVPAELTEYVEKMVEIKLSAEGAM
SASGSGEAAPGAGPQAHSNRVWTGTDEKDAGEVADAEVGTVDDDDVVGTV
DVEALKFHTTADVLLPGGGDDAAPLTVGTVLDSGAGITTISESLVPQLEA
QFPGQRIV
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mRNA from alignment at H-paniculata_contig21836:1149..1772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21836.5768.1 ID=mRNA_H-paniculata_contig21836.5768.1|Name=mRNA_H-paniculata_contig21836.5768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig21836:1149..1772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAGGAGGACAGCAGAGTTCGGATTCTGGGGCAGGGCAGCAGGG
TTCGAGACCGACTGTGACGGTCGGGCCACGGACGCCAGCACCGGCAACGG
CCAGGTGGCAAGGCCCGTACACCGGGACCCGATCGCAGGCGGGACAGCAC
GGGACGGCGAGTCGCGCCGTTGCTGTTGAGAGCGGCGCGACGCCGCAGAC
GAACAATAAGACGAAGGGGAAATACATGCATGTTCCAGCTGAGCTAACGG
AATATGTGGAGAAGATGGTGGAAATCAAGCTGAGCGCCGAAGGGGCAATG
TCGGCGAGCGGCTCAGGCGAGGCGGCGCCTGGTGCAGGCCCGCAAGCCCA
TAGTAACCGAGTGTGGACAGGCACTGACGAGAAGGATGCGGGTGAAGTGG
CGGATGCTGAGGTTGGGACGGTCGACGACGACGACGTGGTGGGCACAGTG
GATGTCGAGGCGCTCAAGTTCCACACCACCGCCGATGTCTTACTGCCTGG
TGGCGGCGACGATGCTGCACCGCTGACCGTAGGGACCGTGCTGGACTCTG
GCGCCGGCATCACAACCATCTCGGAGAGCCTGGTCCCGCAACTGGAAGCT
CAGTTTCCCGGACAACGGATCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig21836:1149..1772+

>mRNA_H-paniculata_contig21836.5768.1 ID=mRNA_H-paniculata_contig21836.5768.1|Name=mRNA_H-paniculata_contig21836.5768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig21836:1149..1772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAGGAGGACAGCAGAGTTCGGATTCTGGGGCAGGGCAGCAGGG
TTCGAGACCGACTGTGACGGTCGGGCCACGGACGCCAGCACCGGCAACGG
CCAGGTGGCAAGGCCCGTACACCGGGACCCGATCGCAGGCGGGACAGCAC
GGGACGGCGAGTCGCGCCGTTGCTGTTGAGAGCGGCGCGACGCCGCAGAC
GAACAATAAGACGAAGGGGAAATACATGCATGTTCCAGCTGAGCTAACGG
AATATGTGGAGAAGATGGTGGAAATCAAGCTGAGCGCCGAAGGGGCAATG
TCGGCGAGCGGCTCAGGCGAGGCGGCGCCTGGTGCAGGCCCGCAAGCCCA
TAGTAACCGAGTGTGGACAGGCACTGACGAGAAGGATGCGGGTGAAGTGG
CGGATGCTGAGGTTGGGACGGTCGACGACGACGACGTGGTGGGCACAGTG
GATGTCGAGGCGCTCAAGTTCCACACCACCGCCGATGTCTTACTGCCTGG
TGGCGGCGACGATGCTGCACCGCTGACCGTAGGGACCGTGCTGGACTCTG
GCGCCGGCATCACAACCATCTCGGAGAGCCTGGTCCCGCAACTGGAAGCT
CAGTTTCCCGGACAACGGATCGTGATGAAAAGAGGAGGACAGCAGAGTTC
GGATTCTGGGGCAGGGCAGCAGGGTTCGAGACCGACTGTGACGGTCGGGC
CACGGACGCCAGCACCGGCAACGGCCAGGTGGCAAGGCCCGTACACCGGG
ACCCGATCGCAGGCGGGACAGCACGGGACGGCGAGTCGCGCCGTTGCTGT
TGAGAGCGGCGCGACGCCGCAGACGAACAATAAGACGAAGGGGAAATACA
TGCATGTTCCAGCTGAGCTAACGGAATATGTGGAGAAGATGGTGGAAATC
AAGCTGAGCGCCGAAGGGGCAATGTCGGCGAGCGGCTCAGGCGAGGCGGC
GCCTGGTGCAGGCCCGCAAGCCCATAGTAACCGAGTGTGGACAGGCACTG
ACGAGAAGGATGCGGGTGAAGTGGCGGATGCTGAGGTTGGGACGGTCGAC
GACGACGACGTGGTGGGCACAGTGGATGTCGAGGCGCTCAAGTTCCACAC
CACCGCCGATGTCTTACTGCCTGGTGGCGGCGACGATGCTGCACCGCTGA
CCGTAGGGACCGTGCTGGACTCTGGCGCCGGCATCACAACCATCTCGGAG
AGCCTGGTCCCGCAACTGGAAGCTCAGTTTCCCGGACAACGGATCGTG
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