mRNA_H-paniculata_contig2183.5767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2183.5767.1
Unique NamemRNA_H-paniculata_contig2183.5767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2183.5767.1 vs. uniprot
Match: D7FTC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.450e-20
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   19 SAIGEAKSLSSTPVFGLREEFRTDPDKRMDVTSTVMIRVDTIDRIFKEHRAVGYALIAIFMD 204
            SAI E  S S+ PVFGLR+E+RT P+ RMD+TSTVMIRVDT+DR   EHRAVGYAL+AIFMD
Sbjct: 1290 SAISEGDSPSNNPVFGLRQEYRTGPESRMDMTSTVMIRVDTLDRFSSEHRAVGYALLAIFMD 1351
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BLAST of mRNA_H-paniculata_contig2183.5767.1 vs. uniprot
Match: A0A6H5K786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K786_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   91 PDKRMDVTSTVMIRVDTIDRIFKEHRAVGYALIAIFMD 204
            P +RMD+TSTVMIRV+T+DR   EHRAVGYAL+AIFMD
Sbjct: 1071 PLQRMDMTSTVMIRVETLDRFSSEHRAVGYALLAIFMD 1108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2183.5767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTC7_ECTSI1.450e-2072.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K786_9PHAE1.360e-976.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2183contigH-paniculata_contig2183:541..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D7FTC7
Hectar predicted targeting categoryother localisation
EggNOG OGs2CP3B@1,2QZQR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.3943076-CDS-H-paniculata_contig2183:540..6391622929595.3943076-CDS-H-paniculata_contig2183:540..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2183 541..639 +
1691480928.5123112-CDS-H-paniculata_contig2183:540..6391691480928.5123112-CDS-H-paniculata_contig2183:540..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2183 541..639 +
1622929595.4051385-CDS-H-paniculata_contig2183:1088..11931622929595.4051385-CDS-H-paniculata_contig2183:1088..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2183 1089..1193 +
1691480928.5213313-CDS-H-paniculata_contig2183:1088..11931691480928.5213313-CDS-H-paniculata_contig2183:1088..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2183 1089..1193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2183.5767.1prot_H-paniculata_contig2183.5767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2183 541..1193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2183.5767.1

>prot_H-paniculata_contig2183.5767.1 ID=prot_H-paniculata_contig2183.5767.1|Name=mRNA_H-paniculata_contig2183.5767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
QGSEEASAIGEAKSLSSTPVFGLREEFRTDPDKRMDVTSTVMIRVDTIDR
IFKEHRAVGYALIAIFMD
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mRNA from alignment at H-paniculata_contig2183:541..1193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2183.5767.1 ID=mRNA_H-paniculata_contig2183.5767.1|Name=mRNA_H-paniculata_contig2183.5767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at H-paniculata_contig2183:541..1193+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATCCGAGGAGGCGTCAGCGATCGGGGAGGCGAAGAGTTTGAGTTC
CACCCCAGTGTTCGGCCTTCGCGAGGAGTTCCGCACTGATCCAGACAAAG
TAAGTCTTTGGAGAAATGGGCAACAGTAAGTAGCGACTGTAAACGAAGCG
GGTTGTTTTTGGCCCCAAGAGACGAGAGTGATGATCGCCAACGTGTTTTG
TACGAACGAGGCTGCTAAATTGCTGTATGGCTTCGTGTTGTCGTTGTTCT
GCATGTTGTTGCGGCAGTTGCGTATGTGGGGTATGCGACAGACAGTACAG
CATATGCGCGGTTAGTGCGTCCAGGTATTTTGGAAATGAATAACGCGAAT
TCGGAAAATAGTAGATGTGAATATCTCCAGTTTTTTCGTTCGTCCACTCT
GTCTGTTTTGGTTTTTCTGTTTGTTAGTGCTGTCTCAATAGTAACGCGTT
CGGACACTTGCACCGATTCCTATGGCAAGGAAATACATGTTTGCCTCATG
ATGTTTTTGGTTGCATGTTTCACCCGCGAAATATATTTCAACAAACAGCG
CATGGACGTGACAAGCACGGTGATGATTCGGGTGGACACTATCGATAGAA
TCTTCAAGGAGCATCGGGCCGTGGGATACGCGCTCATAGCAATATTCATG
GAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2183:541..1193+

>mRNA_H-paniculata_contig2183.5767.1 ID=mRNA_H-paniculata_contig2183.5767.1|Name=mRNA_H-paniculata_contig2183.5767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig2183:541..1193+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATCCGAGGAGGCGTCAGCGATCGGGGAGGCGAAGAGTTTGAGTTC
CACCCCAGTGTTCGGCCTTCGCGAGGAGTTCCGCACTGATCCAGACAAAC
AGGGATCCGAGGAGGCGTCAGCGATCGGGGAGGCGAAGAGTTTGAGTTCC
ACCCCAGTGTTCGGCCTTCGCGAGGAGTTCCGCACTGATCCAGACAAACG
CATGGACGTGACAAGCACGGTGATGATTCGGGTGGACACTATCGATAGAA
TCTTCAAGGAGCATCGGGCCGTGGGATACGCGCTCATAGCAATATTCATG
GACCGCATGGACGTGACAAGCACGGTGATGATTCGGGTGGACACTATCGA
TAGAATCTTCAAGGAGCATCGGGCCGTGGGATACGCGCTCATAGCAATAT
TCATGGAC
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